Array 1 58918-58156 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNWL01000002.1 Escherichia coli strain MOD1-EC6413 MOD1-EC6413_2_length_614387_cov_32.3532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58917 29 100.0 32 ............................. GCACAAGTGACTACATCAAGGATGGGGAATGG 58856 29 100.0 32 ............................. ATTAAGCGATTTTTCCAGAAAGTGCAATAGCG 58795 29 100.0 33 ............................. TCGACGCGGAGCCGGGCGAGTTCCAGATATTGC 58733 29 100.0 32 ............................. GCTGTCCAGCCTGCGCGCTGGCAAAGGCGCGC 58672 29 100.0 32 ............................. AGGTAATCCTCCGCAATGCGCGTCGCATGTGG 58611 29 100.0 32 ............................. AAAACGCAATGAATGGTGACTATGGGGAAATA 58550 29 100.0 32 ............................. GCTAAAGAATTTAAGACGCTAGCCCAGGTACA 58489 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 58428 29 100.0 32 ............................. GCTGAGGAAATCGCAAAACCCTCGCAAGATCC 58367 29 100.0 32 ............................. ATGTTGACGCTCGAGCGCGACGGTAAAACAAT 58306 29 100.0 32 ............................. CGTATTGCAGTGACTATCCCTAAAAACCTGCA 58245 29 100.0 32 ............................. TCAGCAACAATTATTTTCGTCGCATCGTCATA 58184 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGTGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74270-73873 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNWL01000002.1 Escherichia coli strain MOD1-EC6413 MOD1-EC6413_2_length_614387_cov_32.3532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74269 29 100.0 32 ............................. CAGTGTTTCCCGATGCCGGAGACATTTCACGA 74208 29 100.0 32 ............................. CAGTGTGTACAGCGGCTGGCAACGGCTGACGC 74147 29 100.0 32 ............................. GCAGGTTACGCGCCAGTTTGCTACCGGATTTT 74086 29 100.0 33 ............................. TCAATCTATAGCGTCAGTAAATGGAATTAAGGC 74024 29 100.0 32 ............................. GCCCTTTTGCGTGGCACGCCCCAGGAACGCGC 73963 29 96.6 32 ..................A.......... TTATCGGTCATCAACTATAGCGCGTATTTACT 73902 29 75.9 0 ...........T...A.ACAA....G... | C [73893] ========== ====== ====== ====== ============================= ================================= ================== 7 29 96.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTTAATATTTATAAGCGTTATAAATGGGTGGAACCTATAAAGAATTCCACTCATTTGTATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCCGGACTAATCATTGTCATACTCTACAAATTCCGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTAGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGT # Right flank : ATAATATCGGCTATACCAACCTAATATTATCAAATGTTAAAGGTTCTAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATCTCTCCTGAATGGCGTGAGTCAAAATATTGCATTTTTATCAAATGTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAGCATGAAATATATGAGTTGGTGAGTTATAAAGATTATCTATACTCAACAGCCCATGAACTTGTTGATTTTCAAGATGGTGTATTACGATTTCAACAAATTAGAACAAAATACAGGCAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAAGAAATATTGTCTTTATGGTAGGAAAACGCAATTTTTCATATTATAAATATGAGATTAAAACAATAATTTAATATCATGCTTTTATTTTAATCTCGAAAATGCCTAATTTCATTAAATACGCTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 152921-153126 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNWL01000003.1 Escherichia coli strain MOD1-EC6413 MOD1-EC6413_3_length_455708_cov_32.1952, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 152921 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 152981 28 100.0 32 ............................ GCTGTATTCGGCAAATGAAGTGGATGTTGATG 153041 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 153101 26 85.7 0 ................A...-A..-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTGATGATGATGGTTAGTTGTTGATAATTAGTCCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATGCGAAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTTGCCTGACCTCATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAATACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //