Array 1 47-1173 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUJ01000130.1 Methylomonas koyamae strain R-45378 contig_86_(59..5026), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47 29 100.0 32 ............................. TGGACGAGCGTGCAGTGGCTCGTATCGGACGG 108 29 100.0 32 ............................. CGCACGCAAAATTTGGCATTTAGAACCTCCAC 169 29 96.6 32 ............................A GAGGCAATCATTCCGCCGCTCGGCGTGTCGTA 230 29 100.0 32 ............................. CACCAGGCGCCGGTATTGCTGGTCGAGGGCGA 291 29 100.0 32 ............................. ACCGGGCCCAGAGCGTGGCAAAGCGAAATCAA 352 29 100.0 32 ............................. TAATAAGTTGCCATGTCTGCTCTCCAGTTTTC 413 29 100.0 32 ............................. TCGCCAGGCATGTCGTACAACGCCTGGCCGCC 474 29 100.0 32 ............................. TCGCCAGGCATGTCGTACAACGCCTGGCCGAA 535 29 100.0 32 ............................. GCCGCAAAAAAGGAAGCGTGAACAAAACAACC 596 29 100.0 32 ............................. GGGCGCTGTGAGGATGGTCTAGACGGACTACG 657 29 100.0 32 ............................. GCCGGTAATCGTGGTCGATCCTGCCGTAACAT 718 29 100.0 32 ............................. TGTCTATTGATGATTTCAACTCCCTTAGGAAT 779 29 100.0 32 ............................. CGCCAACGATGTTGTTAGCCACGCCCGGCAGG 840 29 100.0 32 ............................. ACCATTGCCGCCGCATCAACCGGGCGATTTTC 901 29 100.0 32 ............................. CCATGATCGGCGGCGCCCCGTTTTTCATGGCT 962 29 100.0 32 ............................. TCCAGTTAATTGGGAATTTAACCCGCGATCCA 1023 29 100.0 32 ............................. GCGACGACGGCGGTTGCTTCTCCGCTGCGCTT 1084 29 100.0 32 ............................. AACACAGACATTATCTGGACGAAACCGGCCGG 1145 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GCGGGGATGAACCGACAATATGCAATTTGCTGGCGAAGTCAAATGCG # Right flank : GTCCGTCACCACGGGAGTCTCGGGAAAAACCCAAACCCCGGCGGCGCCTGGATTTCGTAACGCTAACAGGCGTAGACGTGCCACAGCTATTCGAGGGACAACACCAGGCGCTTGCCGAGTGCCCGCGCGGCTTTGTCCAGTTGTTTGAGCGTTGGCCAGTGGTGCGGGTTTTCGAGCCGCTGAACTGCCGGCCAGCTGGTTTGCATGGCGTTAGCCAGGTCGGACAAGGAGCGACCTGCCCTCGCCTGGCGCAGCAGTAGAGCGGACTGTACTTCTACACCTGGCGTTGCAAGGCGTTCGCCCGGCTGTGCAGCCGACGGCGCCGGTATTTCCTGATTATGGTCGAGCCGATAGGTAAGAATGCCGGTCAGGACTTCCGCGGCGTTGAACGCCGCCTCTTCGAGGCTTGCGCCTTGGGTAAAGGCTTCTTCCAGATCCCGAAAATGGACAAAATACACGCCATCCTCTTCGAGGCATACGGCATATGGGTAAGCGATGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11707-12392 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUJ01000131.1 Methylomonas koyamae strain R-45378 contig_87_(1..12447), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 11707 35 72.2 38 ...C...-.C.T.T.T..T.T.....G....G.... CGCGGTTGACCACGTGCAGGTCTTTTTCCGGAATCAGC 11780 36 100.0 36 .................................... AAACTTGGGAAGAAGGCTGGTGTCACGGGGCATTCG 11852 36 100.0 38 .................................... GCTGAGCTTGTTCCCGCAGTAATCGACGGAATTTTCAC 11926 36 100.0 37 .................................... GAAGCAGAAATCGAGTTAAGAGGAGGAAGATAAAATG 11999 36 100.0 36 .................................... GCGTTGACTTTCACCACTCAATACAACGTCAACGTT 12071 36 100.0 35 .................................... CTCAGAAATGGGCCGACGAACTCAGACGCTACGAT 12142 36 100.0 35 .................................... GAGCTGATCCCGCTGCATCCGGATCGCATGACGCC 12213 36 100.0 37 .................................... AAACAAAAAAGTAAAAAACAAAGATGGCAAGCTCAGT 12286 36 100.0 35 .................................... ATTGCCCATTAGATTCTTCCGCAGGAGAGATTATA 12357 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 10 36 97.2 36 GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Left flank : GCCTGGTCGACGCCGGCGAACTGAAGGCGGCCGAAGAACGTTGCCACGCCCTGAAAGGGGTTAGCGGCAACTTGGCGGCCGTGGCGCTGTTCGAAGCCGCCGCCGAAGTGGACAGCCTGCTGAAACAGAACCGATGCCCCGACCCCGGCCAATTGCAGCGAATGGACACGTTGTTGGCCGAATTGTTGGCCGAAATCGCCAATCTGCCCGCCGCCGGCCATTCCGCCGCGTCAGCGGCGAGCGTAACGGCCAAACCGCAGGCGGAAATGACCGCATTGCTGGAAAAATTGGCTGACGCCTTGGAACACGACCTGGGCGCGGCGGAGGATTTGATGGAACAAGTACGCGCGAGTCTGGCCGACAGCCGTTATCAGGCTATCGTTGCCGAAATCGGCAACAAACTGGACCGCTTCGCAATCGACGAAGCCCAATCCCAACTGACCGAACTGCGCCGGCTGATCGCGCAAAGTTAGCCGATTATTTCATTGCTTTTCGTTATC # Right flank : CTCCCGCCCTGCGTCGGCGGCGAACACCGAAACGAAGCTTCAATGAGGCCCCGGC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.80,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 4666-6525 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUJ01000135.1 Methylomonas koyamae strain R-45378 contig_90_(1..6525), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4666 29 100.0 32 ............................. TAACACGTATCGGCTGAGCGATGATGCGTTCC 4727 29 100.0 32 ............................. CATCGGTACCGGGGTTGCATTGGCACATTGAA 4788 29 100.0 32 ............................. TCTGCCCTGGAGCGCGACGCAGTTATCCGGAA 4849 29 100.0 32 ............................. CGTTTGCAACTCGCGGTTGAGTGTAGCCGGCA 4910 29 100.0 32 ............................. CCGGTAACGTTACCGCGCGACTCAGACAGGCC 4971 29 100.0 32 ............................. TTTTGAATCATGGTGTAATGCTCCGCGATTAA 5032 29 100.0 32 ............................. TCATATCGTAAACAGTCCGATCCGGATCCAAC 5093 29 96.6 32 ............................A CATTAAGCATAAAGTTTGTATTTGCATTTTTC 5154 29 100.0 32 ............................. CCTTGCAACCTATTAACCTTCTCACCCGTGAT 5215 29 100.0 32 ............................. ACGAGCACGACGCCGACGCCGTGTTTATCGAC 5276 29 100.0 32 ............................. ACAGATTGGAGCCGGCGCACAACAGCGCAATG 5337 29 100.0 32 ............................. GCATCGGCGAATGGCTGGAATATGCCGATCCG 5398 29 100.0 32 ............................. TCGATGGGTAAGAAGGCGCCTTCATTTAGCCC 5459 29 100.0 32 ............................. GCCATCGTCAAAGGCAACAATCTGCCGTTGGC 5520 29 100.0 32 ............................. CCGGATACGTGGATATTTAACCAGTTCCAGTG 5581 29 100.0 32 ............................. CAGAAAAGCTTCAGGCGCACCGGGCGAAGCCG 5642 29 100.0 32 ............................. TCGGCACCGCGTGTTTCACCCGATGAACAGGC 5703 29 100.0 32 ............................. GCATCCAGGCCGAACGCCATCAGGAATAAACC 5764 29 100.0 32 ............................. CGGGTTTTTCATGGCTTATTCCCTCCCGGAAA 5825 29 100.0 33 ............................. TACAACCTCACCAGTGGTGACGTGGCCGCGGCT 5887 29 100.0 32 ............................. TCGAATGGCAGAAACTGCCGAACGGCACTAAC 5948 29 100.0 32 ............................. AATTACTACCGTCGATTCCGTCACCGCATTGT 6009 29 100.0 32 ............................. CCGACGAGTTGGAAGCCCGGCGCTACGATCGG 6070 29 100.0 32 ............................. TTTAAGGGACAAGTACGGCTAGCATTGGTGGG 6131 29 100.0 32 ............................. TCGAACCATTCGCTATATTGCGTGGCGTCGAA 6192 29 100.0 32 ............................. TCATTGGCGGCAATTTGCAGGATTTGCGCGAA 6253 29 100.0 32 ............................. GGTTGACGCGGATCCGCTGCCGCGGGTGTTTC 6314 29 100.0 32 ............................. GGCCCAGTTGAAGCGCCGGGCAGCATGTCTCC 6375 29 100.0 32 ............................. TAGGGTACCCCATCTATATCTATGATTAGGCC 6436 29 100.0 32 ............................. TTGGGGGACCTGATAGAAGTCCCGGCCGTGCT 6497 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GGCCATCCCCAACCCGGAGAGCATAGGCGATGTTGGTCATCGTAGTTGAAAACGTCCCGCCAAGGCTGCGCGGACGTCTGGCGGTGTGGCTGATCGAAATTCGCGCCGGGGTTTACGTCGGCGATTTGTCGGCCAAGGTACGGGAGATGATCTGGTCGCAAATCGAAGAGGGTTTGGAGGAAGGTAATGCCGTGATGGTCTGGAGCACCAACACCGAATCGGGCTTCGATTTTCTAACCCTGGGCAAGAACCGCCGCCTGCCGGTGGAACTGGACGGCTTGAAACTGGTGTCGTTTTTTCCGCCGGACGATGCCGATTCGACTCCCTCGCCCTCCGGGAGAGGGCCGGGGTGAGGGGAGAAATGCGCACTAAATTCCTGTTAGGTTCTAGTGCGCTGCAAGGGGTTTCACCCGCTTTTTAACAACTTGGAAAATACCGAAAAAATCGGTGGAAAATTAGACGGGCTGTTTCCGTTTAACTAACAATAAGTTAGGATTAGT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2070-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUJ01000020.1 Methylomonas koyamae strain R-45378 contig_118_(1..2117), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2069 28 100.0 32 ............................ GTCAAAATCCAGTAGCTGAATTTTTGGCAGGG 2009 28 100.0 32 ............................ AGAATCACCCGCATAGATGTCGCGCCGGTTGT 1949 28 100.0 32 ............................ ATTATGCATACGGCTATGAAATCGACGTGAAT 1889 28 100.0 32 ............................ TTTTGCATACAACGATTCAAACGTGACTTCCA 1829 28 100.0 32 ............................ ACAAATCGGCCGGGCTAGCCGTAACGCCTAAA 1769 28 100.0 32 ............................ ATTGATAAAACCGCGCCATGATTTTTGAATTT 1709 28 100.0 32 ............................ TAACGAAACTGAAGGCGCGGTGATTGAAATTA 1649 28 100.0 32 ............................ TAATCGCCTTGTCTAAATCGCCGCCCTCTTGT 1589 28 100.0 32 ............................ TAAGCGGCAAAAAAGCAATGGAGGCTTATTAT 1529 28 100.0 32 ............................ GCCACGCGACACGCCGGCCACCCGCATGTAAA 1469 28 100.0 32 ............................ GTAAAAGCGAACGGTGCCAACACGCTGAAAAA 1409 28 100.0 32 ............................ TTGACGCGCCGGTAGAAAACCCGGAGCCGGTT 1349 28 100.0 32 ............................ GTCGAAATAATTGAGGGCTATATTTTTGATGA 1289 28 100.0 33 ............................ TAATTATTTTTGCGATATTTTGACGCCCATTTT 1228 28 100.0 32 ............................ AATAACCCAAAAACCGTTTACAGTACGTAGAG 1168 28 100.0 32 ............................ GTTGATGCGTTCCCATAGGGCTCTATAGCCGC 1108 28 100.0 32 ............................ GACGACGGCGAAACCTGCCCACAATGCAAGCT 1048 28 100.0 32 ............................ GTCGGCACGCCGGTTGCTGTCGATGTGCCGGT 988 28 100.0 32 ............................ AAGCCAGGATTGCCGCCATAGTCCAACTGGGC 928 28 100.0 32 ............................ TCGATATTGTCCGCGCTCCGAACCTGCATCCA 868 28 100.0 32 ............................ AGTCGCCGCAAATATCGATTTCAATTTGGAAT 808 28 100.0 32 ............................ TTAACTGCGCTATATCTGTATAACCTGGCTAT 748 28 100.0 32 ............................ TAACGTCATAGTCAGAGATTCGAACGAAGGCC 688 28 100.0 32 ............................ AGCGTGATGCTTGTTGTTTCAATCACGCGGCC 628 28 100.0 32 ............................ GCTGGTAGTTATTAACGATTTGACTAATAAAC 568 28 100.0 32 ............................ TTCACGGAAGGTATCGAGTGGGCTTACCCGAT 508 28 100.0 32 ............................ AAAGCAAATAGCAATAGAGCGATCAGAAGGCA 448 28 100.0 32 ............................ CGCAGCAGCACCCTGGCGCCGCGTTCGCGGGC 388 28 100.0 32 ............................ ACCGGAGCACGTTGGAGCGAAGCCGAATCGTT 328 28 100.0 32 ............................ TGCCCAGCATCGACATTGGGAAATGCGACAAA 268 28 100.0 32 ............................ ATGGTAACGGCGTCGATAAAACACACCACCGC 208 28 100.0 32 ............................ TGCATCGTAAAACCGCTAACCAGCGCGATAAT 148 28 100.0 32 ............................ ACGTCGAGCCGTTCGAATCGATCGACGATCCA 88 28 100.0 32 ............................ GGCACGGAATAACCGCGCACGTACAGCGCTTT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : ACAGGCGGCTTAGAAAATTAAAAAGGGCAGCCAAAAAGACGTGTTGG # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-1037 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUJ01000042.1 Methylomonas koyamae strain R-45378 contig_137_(1..1037), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50 28 100.0 32 ............................ ATTGATGCGGTACCGGCAGCATGCGGCAGTCG 110 28 100.0 32 ............................ AGGTGTGGGTCATGGCTATTTATCCAGCGAGT 170 28 100.0 32 ............................ TGCATCATTTCCTGCATCGTCGACGGCGCCAA 230 28 100.0 32 ............................ CGGGACGCCAATCCCAGGCACTGGATTTTGCC 290 28 100.0 32 ............................ TGGACCAAGCGGTGCAGGACGCCAAACTCACG 350 28 100.0 32 ............................ AAGCCAACATCGGAATTTTGCAGCTTGTACCG 410 28 100.0 32 ............................ GGCAGCCTGGCGTAGTATTTGGCAAGGCGGAT 470 28 100.0 32 ............................ TCATGGCGATACTCCCAACAGCGCCCCGCGCT 530 28 100.0 32 ............................ GTTACCCACCGGCCGGAAGGCGGTTACGCCGG 590 28 100.0 32 ............................ GTCATGAGTAATCAGGCGCTTATATCGGCTAA 650 28 100.0 32 ............................ AGAACGAGATAACCGATAAATGTAGTCATCGA 710 28 100.0 32 ............................ TATAAACCCTACCCTGACCCTAACACCAACCC 770 28 100.0 32 ............................ TATATTGAATGTTGCCGGCCTCGCGTATGCTG 830 28 100.0 32 ............................ TGCCCGCCGGCGCCGCTGCCGATGCTCGTATC 890 28 100.0 32 ............................ AAACCGCCAGACGAGAAAGCCGACTAGGAAAA 950 28 100.0 32 ............................ ATCAAATCATAGTTTTTGCTGATAGCCGAAAC 1010 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : CACAGGCGGCTTAGAAATCGTTAACTGCCACTTCGACGGCGTCTGATGTG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2324-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUJ01000037.1 Methylomonas koyamae strain R-45378 contig_132_(1..2377), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2323 36 100.0 38 .................................... TCGGCGAGAAACAAAAAGAACTGGCCGATGAAATTCTG 2249 36 100.0 36 .................................... ACTGCGGAAACCACCGAAACTGCGCCGGCAACCGAG 2177 36 100.0 37 .................................... ACAATAGAATCGCGCTGCCCCTTCGAAGGATCAGGCT 2104 36 100.0 35 .................................... TGTTCCACAATACGCTTGAAGAACTGCGGCTGCTC 2033 36 100.0 35 .................................... AGGCCATCAGGTACTTCCCCTGGGTACTTCTGCAT 1962 36 100.0 37 .................................... ACTGAATACCTCAGGCAGTGCGCTTGATATGCTCAAT 1889 36 100.0 37 .................................... TGCTGATCAACGTCTTCATGCCGTCTTTGAGTTCCAT 1816 36 100.0 35 .................................... ATCAAAACGGGCGTTCTAGTCGTGCTGATTCCATT 1745 36 100.0 35 .................................... CGGAGCGAGATAAATATCACCGGTCGAACCGTCTG 1674 36 100.0 36 .................................... TCGGGATTGGGCTGCGGTTGCAAGTCGGGCACCTTG 1602 36 100.0 36 .................................... AGGGTGCTTGTCTTGCCTGATGCTGAAGAGGAAACC 1530 36 100.0 35 .................................... TGATCAGATCGAATAAATTTACTTTTCGGCCCCTG 1459 36 100.0 35 .................................... GCGACAAAATCGAAATTCCTACAGGTTACACTGTC 1388 36 100.0 36 .................................... GTGGTTGATCGGCAAATTCGGCGCCGACGAAGCCGA 1316 36 100.0 36 .................................... CCCTCTGACCCACCACCCGAGGGGGATGCAATGGAT 1244 36 100.0 36 .................................... GTGGAAAACGGCAACAACCTGGTCGAGGTCAATTTT 1172 36 100.0 35 .................................... GTCATGGTGGAAAGATATACAAGCCAAATACAATG 1101 36 100.0 36 .................................... GCCGGCCGGCGTCAAACCGACCAAAGAAATGACGAT 1029 36 100.0 36 .................................... TCCGGCGCCGGTAAAAGCACGCTGCGGGAAGACCTT 957 36 100.0 36 .................................... GTTCTTCTTTGCCCGCCTCGTCGCATGGTTTTCGAC 885 36 97.2 36 ...................................T CGCCAATCTCGGCAGTTTGCAGCCCCATATAGTTTC 813 36 100.0 36 .................................... AATCAGGATAATAAGCTCATGGTTTCGGGAAGCCTT 741 36 100.0 37 .................................... CCCGACAGCTCAGCGAATTTTGCAATCGTTATCAAAC 668 36 100.0 37 .................................... AGTTTTGACCAAGGCAGAACATAAGGCGCTGCACATT 595 36 100.0 36 .................................... GTGCTGAAAGATGCCGAAGACGCACTAAAGCAAGCC 523 36 100.0 38 .................................... GCCGTGACTGTGCGCTTTCTAGGTTTTCTCGACAAAAT 449 36 100.0 35 .................................... AAACCGAAGCCGAAAAACCGCGCAAAGGCATTCTC 378 36 100.0 35 .................................... CACTCTATCGATTGCTTTCAGTTCCAGCTCGACCC 307 36 100.0 35 .................................... AACTGATTGCAGCGGACTATCATAGTCAATGACAG 236 36 100.0 36 .................................... GGGGTATTTTGCGCTAAGAGCGTCAAGAAGCGTTTT 164 36 100.0 37 .................................... GCCCGCGGCCAGCGAACAGGACTTGCAACAGCGCATT 91 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 32 36 99.9 36 GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Left flank : CGGGAGGCCGGGGAATGCTCTGAGCTACTCCGCCATCAAAATTTGCAGACGAT # Right flank : CATGCGAACAGATCGATCATCGACACTCTTTACACTGAGCTTCAATGAGGCCCCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.90,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 35474-33585 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUJ01000058.1 Methylomonas koyamae strain R-45378 contig_25_(1..35473), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35473 28 100.0 32 ............................ AAAATATACGCCGACGTTTTGCCGCCGTCCGA 35413 28 100.0 32 ............................ ATACAAAAAACAGCGCCCCTATCCGTAAAACT 35353 28 100.0 32 ............................ ATGCAAAAAACAGCGCCCCTATCCGTAAAACT 35293 28 100.0 32 ............................ TATACGCGCGTTAGATATTTCTAGCGAGTCTG 35233 28 100.0 32 ............................ TCAAATAAACATAGCGGCCAGCATCGGCAGCA 35173 28 100.0 32 ............................ TTAGACTTGTTGCCGCTAGAAACTCTAATTTT 35113 28 100.0 33 ............................ TCAGCAGATTACCTGCCGCCGCGCTCAACCTAA 35052 28 100.0 32 ............................ TATCTGGAAATTCATCACTGACAATCCGCTAA 34992 28 100.0 32 ............................ TATCCGTAAAACCCATTGCCGGCATATTATTA 34932 28 100.0 32 ............................ ATAACGCGGTCTAGTATGACCGATATTTTGTT 34872 28 100.0 32 ............................ ATAAATCGCTTTTTTATCCGTTGCCTCGTAAG 34812 28 100.0 32 ............................ AAATGGAACGCGCTGGTATTGATTCGCGCCGA 34752 28 100.0 32 ............................ ATTGCTCCAGTCTGCGCTGGCAGTGGGAGCGT 34692 28 100.0 32 ............................ TGGATACCTTCCAGCAGCAACGGCGCGGCTAT 34632 28 100.0 32 ............................ GGCGCCCGTGTTGTCGGTTGGCGGTTCATCGG 34572 28 100.0 32 ............................ GCCTACCGGCAAATCGCAGCCGAGTACCTGAC 34512 28 100.0 32 ............................ ATACAGGGCCGTGCTAACGGGCTGGTCTGAAT 34452 28 100.0 32 ............................ TTGCCGGGAGACGAGTCGGCCAGAAAATTCAA 34392 28 100.0 32 ............................ ATCGGCAAAAAACCGCATTACTTCGGAATCGT 34332 28 100.0 32 ............................ AAGAGAATGTTCCAATTGAACATGATAAAACC 34272 28 100.0 32 ............................ ACCATCGGGCCACAAAATACGACCTTGATAAT 34212 28 100.0 32 ............................ ACGATAAAGCGGACGGTGGCGAATATAGAGGA 34152 28 100.0 32 ............................ TGCCTATCACGATGTTCGCGCGTTTACTTAAC 34092 28 100.0 32 ............................ CAGAAACGGAGCCTAGCGAATTGGAAGGGTAT 34032 28 100.0 32 ............................ GATGGGCGCTATTGCCAATATTTTCAGGCATT 33972 28 100.0 32 ............................ ATAATTAACCGGCTCGGCTCGGTTTCGTCGCG 33912 28 100.0 32 ............................ AGCAAGTTTTCAGCGCCTTTGGCGCCGGTCGT 33852 28 100.0 32 ............................ TACTATCGTATCAGAACCGAAAGCACTTTAGC 33792 28 100.0 32 ............................ AGCACAGAACAAACCTAACTAGCCGCACCACA 33732 28 100.0 32 ............................ GCCAACTGTAGTCAACGATCAGGCATCGCCTA 33672 28 100.0 32 ............................ ATGCAAACCAATCAAACTAACCGAAACATAGC 33612 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.9 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : | # Right flank : TGAAATCGAAGGATGCCGGGGGTAAGTTGGCAGCGGAGTTTGACTACATCAAGAAAGGCAATCCGGCCGCCAATATGATCGTTTCCGGCTTTAGGCAGGCTACCAGAACCATTGAGGAAAAGATTCGAGGGGGATTTATCAGGTGGTGGAATGAGAGCGGGAGGCCGGCCGTCCCTCCATCCGTCTACTCTTACGAGCCACGCCACGTGGAAGCCGAATTTCCACGCCTCGCTCTCATCTAGCGATCATAGGTCGAGTCATGATTGAAGACAACAAAAATAGGAAGCTCTATGTGGTGCCTTATCGGAATGTCCGCCGCCGCGAAAGGCTGAGACGGCATGCTGTTACCGGAAGCGATCGCCGAAACTTATTGGCAATCGCATTGCCAGCATTCCCGCGCCTGGAGCCACGAGATCGACCGGCGCCCGTTCAAGGGGACTTTCCGAACGGCGCCGGCGGCCTGGCTATTCCTGGTCCCACAACACCGGAAATGCCTTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 24027-26094 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUJ01000090.1 Methylomonas koyamae strain R-45378 contig_53_(1..26094), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24027 28 100.0 32 ............................ GCTCAATGCTCGGGTTAAGTGTAAATCGCTGC 24087 28 100.0 32 ............................ TTCAACTCACACGCAGTTGCCCTTAACTCTGA 24147 28 100.0 32 ............................ TCACGCAATTGATCGAGCTTAGAAAGCAGAAT 24207 28 100.0 32 ............................ ATGCGAGCAAGTAAATTACTCGTTCTCTCATG 24267 28 100.0 32 ............................ ATCGTGGTTTGGATACTGTCCGGCAGTTGTAT 24327 28 100.0 32 ............................ AGATATTGGAGCAAAACCGCGTACCCATTGAA 24387 28 100.0 32 ............................ GCTTGGGTTGACGCATTCACGGTTGAATTTTC 24447 28 100.0 32 ............................ AACGGACGGAATCGAGACATTGACCGAAACCA 24507 28 100.0 32 ............................ ACATTGAGAACCGGGAACGTCGGGCATCGTGT 24567 28 100.0 32 ............................ CGCAACTGGCAAGACAAAAGCCGAAAGGCCGT 24627 28 100.0 32 ............................ AAAATTTAGGTGCGCGACTATTGCGAGCGATA 24687 28 100.0 32 ............................ TGGTTGCTGCAGTCGCGTAAAGATCACTGGGA 24747 28 100.0 32 ............................ AACCCGGCATTATGTCACCGACTTAGATTTGA 24807 28 100.0 32 ............................ CGATATAGGGAATCTTGCGGCGATCAGTTCGA 24867 28 100.0 32 ............................ AAAAAGCCGAAGTTGCCGGCTCTCATCTGAAA 24927 28 100.0 32 ............................ GACGGGAAAGCGTGGGCATGGATAAGCTGGGC 24987 28 100.0 32 ............................ CTATCGATATAGATGGACCGGAAGAGCCAATA 25047 28 100.0 32 ............................ GATAGTGATAGTTTCCGCATCACCGGAGCCAT 25107 28 100.0 32 ............................ TGCGGTGTTTATTCTGTTCTTCCTCCCGCCTA 25167 28 100.0 32 ............................ ACAATAAAGCGGACAGTGGCGAATATTGAGAA 25227 28 100.0 32 ............................ TGCTGGATCGGATACGGGCGGAACAGGTGGCA 25287 28 100.0 32 ............................ AGCCCGGCGCTCTGGGCCCGTAGTGCGGGCCC 25347 28 100.0 32 ............................ ATTGCTTCCGCGTTCGATGCTACTGGCGCTTA 25407 28 100.0 32 ............................ AACGATAAGCCATGTTTTTGTTGGTTTATCCG 25467 28 100.0 32 ............................ ACCAGCAGCCGGAGCCGGGACAGTTTCCTTAG 25527 28 100.0 32 ............................ ATCAATAATGATCTGATCAGGGACGAGCTTCG 25587 28 100.0 32 ............................ AATTTAACCGGCGTTAATAAATGGACACTTTT 25647 28 100.0 32 ............................ ACTAGACCGAGGACGCCACTATGCAAACAACC 25707 28 100.0 32 ............................ TATCGAAATAAGTGCCGATAACTGCACTAAAT 25767 28 100.0 32 ............................ TGCCATCGTATTCAATGCCAGCGCCGGGTTGT 25827 28 100.0 32 ............................ TGGTAGGCACCGCGGGCAATGTCGCGACTAGC 25887 28 100.0 32 ............................ CACAGATTAGGCGAGGTGCTTAATCATTATTC 25947 28 100.0 32 ............................ CATTTTTGATACCTCGGTTTTGAAAAATTAAA 26007 28 100.0 32 ............................ AAAAGCTGGATTTTTGGCATGGCGGCGAAAAT 26067 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 35 28 100.0 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : CATTGCACCGGCATCCGGCCGGTGCCGGACAAGCTGTTGGGCTACGCGGTTTACCGGCGAGTGCAGCCCAAGACCAACCCGGAACGCCTGGCTAGGCGCTACGCCAGACGCCACGGCGTGGACCTAGCGACCGCGCTGAACATGACGGTTGAATTGCGGGCGGCGGGCGAGAATCCGGCGTACCCGTTGTCGTTTCGCTATTGCGACATGCTCAAGCCTTCCGTGGCCTTGCCGTTCATCCGCTTGCAAAGCTTGAGCGGCGGCCAAACCTTTTGTTTGTGGATCAGTAAAACCGAAGCGGTCGCTCCGGTATCCGGCAGCTTCAGCGCCTACGGCCTGAGCAGCGTCGCCACCGTACCCGAATTTTGACCCAAATTTTTTCGCTCTTTAACAATGTTAATTAAATCAACCGGTTACGGTTAAGGCTGTTGCGGATGGTAAAAATGGGTCAAACCGTCCGCAACCCTTGTCGCAACCGGTTTCCCGTTTATTTATAATCA # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10751-11769 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUJ01000008.1 Methylomonas koyamae strain R-45378 contig_107_(1..17341), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 10751 37 100.0 33 ..................................... TTGCGGTCTCTGACAAATTTAGCCACCTTGACG 10821 37 100.0 30 ..................................... CCAAAAAACACGCATTCATCTGCGGTTGCT 10888 37 100.0 34 ..................................... GGCCTTGATGATGTGAACAATGTTTTCATGATCT 10959 37 100.0 34 ..................................... GCCGGTACTACGACAGACACTACCGACGCAATGG 11030 37 100.0 34 ..................................... ACCGACGCCTGCAACTGCTTTACCAGCTCAGCCA 11101 37 100.0 35 ..................................... CCATAAAACAATACCATCTTCTTCAAATCTCATTT 11173 37 100.0 31 ..................................... AGCGTCCAAAAGCGTATGCCGCGCCCTCGCG 11241 37 100.0 32 ..................................... CGGCCGCGTATTCAATCTCGGCGACTCGTTTG 11310 37 100.0 35 ..................................... CCCTGGCCGCGCTTCCCCTTCCCGCTTTAAATCGC 11382 37 100.0 34 ..................................... TGTGTTCCTTCGGGCTCGCCCTTCACTTTGTCCG 11453 37 100.0 31 ..................................... TTGCCCGGGATTCAGGCTTTCGTACCGTTTC 11521 37 100.0 34 ..................................... CCCCTTCCCGCTTTAAATTTCCGCCATTCCGAGA 11592 37 100.0 33 ..................................... GCAACAGCTTGTCCCATTTCAAGACATTGACGC 11662 37 100.0 33 ..................................... GCCGCCATTCCGAGTATTTCGCGGATTCGGTTA 11732 37 83.8 0 ...........................AT...TT.TA | C [11746] ========== ====== ====== ====== ===================================== =================================== ================== 15 37 98.9 33 ATTTGAATAACAGACCTTATAAAGAAGGGATTAAGAC # Left flank : CGATGCCGATGCCCGGTTCATGACCAACGGCGGCTGGCTGGAACTACATACCTACGCCCTCTGTTTGAACTTGAAAAAAATGTTGAATATTCAGGACATCGCCTGCAATGTGACCATTCAACGCCAGCCCGGCGGGAACACGCCGGTCAAAAATGAAATTGACGTAGGCCTGATCAAGGCCAATCGCTTGCACATGATCGAATGTAAAACCAAGCAATTTGAAAAGGACGCCGATGTTTTGTATAAACTCGATAGCTTGCGCGACTTGATCGGTGGCCTGCAAGCCAAAGCCATGTTGGTCAGTTTTAACGACCCCGGTAAAGCCACGCGCGCCCGTGCCAGAGATCTGAAAATCGCGCTGTGCTGCAAGACCGACCTGAGGAATTTACAACACCATTTGCAAACCTGGCTCACAGCCGAAAGATAACTTTTTCAAAATGAAAAAACCTGGCAACCCCATTTCCAACCTATTGAAACATAGAGGAGAACGCCGTCAAGCG # Right flank : AGGCTCGGCGCCAGTCGCGATTACAAGCATCTCGAGTCGCGACGAAGCGCCGCGCCACATTGCAGATTTGAAATCTGCGACAAGGTGTTGCGCCCGCCGTACTCTTGACAAGCTTGCCAACGCTGACCGGCTAACTGATTTCCCGTAGATTTGCGGCCATGACTCATAGGCAACTCTATCTGGCAGCTTACGATATTTCCTGCAACCGGCGCCTGCGCAAGGCGTTGTATGTGTTGCGCGGCTATGCGTCGGGCGGGCAAAAATCGGTATTCGAGTGTTTTCTTACCGCTGCCGAAAAACGCCAATTGCTGGAGGAGATTAGCCAGGTCATAGACCCGGCGGAGGACCGGTTTATCGTGTTGCGTTTGGCAGGCGCCAAACAGATACGCACGCTTGGTAAGGCAGTTCTTCCGCAGGACGGTTCGTTTTTTTACGTGGGGTAACTGTGAGCAGTCTGTATCTGGATCGAAAAAACCTGGGCATCAAGTTGGACGGCCAAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAATAACAGACCTTATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //