Array 1 219976-221468 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGN01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E68C3 NODE_2_length_400268_cov_12.4531, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219976 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 220037 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 220098 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 220159 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 220220 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 220281 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 220342 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 220403 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 220464 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 220525 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 220586 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 220647 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 220708 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 220769 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 220830 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 220891 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 220953 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 221014 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 221075 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 221136 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 221197 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 221258 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 221319 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 221380 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 221441 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237600-239564 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGN01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E68C3 NODE_2_length_400268_cov_12.4531, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237600 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 237661 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 237722 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 237783 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 237844 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 237905 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 237966 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 238028 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 238089 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 238150 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 238211 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 238272 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 238333 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 238394 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 238455 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 238516 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 238577 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 238638 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 238699 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 238760 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 238821 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 238883 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 238944 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [238986] 238986 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 239047 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 239108 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 239169 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 239230 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 239291 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 239352 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 239413 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 239474 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 239535 29 96.6 0 A............................ | A [239561] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //