Array 1 165899-163732 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLL01000003.1 Salmonella enterica strain CFSAN060806 CFSAN060806_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165898 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 165837 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 165776 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 165715 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 165654 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 165593 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 165532 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 165471 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 165409 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 165348 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 165287 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 165226 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 165165 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 165104 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 165043 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 164982 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 164921 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 164860 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 164798 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 164737 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 164676 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 164615 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 164554 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 164493 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 164432 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 164371 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 164310 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 164249 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 164188 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 164127 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 164066 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 164005 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 163944 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 163883 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 163822 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 163761 29 93.1 0 .............C.A............. | A [163734] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 176397-176125 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLL01000003.1 Salmonella enterica strain CFSAN060806 CFSAN060806_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 176396 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 176335 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 176274 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 176213 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 176152 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTACAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //