Array 1 114672-115540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPY010000004.1 Pseudomonas cichorii strain LCDW06 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 114672 28 100.0 32 ............................ ATCAGGTATACCATGACCTAATCAGCAGCGGC 114732 28 100.0 32 ............................ GTCAAGTCTGCTTTCAAGGACGTCGATGGGCG 114792 28 100.0 32 ............................ GAACTGAACACGGCTTCTCAATTGAGTGAAGG 114852 28 100.0 32 ............................ GGGCTGAAGGCATTCAATCAACATACCTTTAA 114912 28 100.0 32 ............................ GTTACGCTCTTCAACTGCGGTGGCATCGGTGA 114972 28 100.0 32 ............................ GACATCGCAGTCAAGAACGCTGCCTTCAAGCC 115032 28 100.0 33 ............................ ATACCCGGCTTGAATCAGTGTGGGGCTGATCAG 115093 28 100.0 32 ............................ CGAGCGCCTGGCTCAGCGCCAAGGCTTCACCG 115153 28 100.0 32 ............................ GGAACCCGAAACGAGAACAGCGGTAGCCTTAC 115213 28 100.0 32 ............................ GACGTGATCGAGGCAGCGTCTGCACTCTCGGC 115273 28 100.0 32 ............................ CGGTTGCGGCACCAGTCATCAGCCCACCAGCT 115333 28 100.0 32 ............................ CGATGTTGCAGCACGTAGCCCGGAAAATCGTA 115393 28 96.4 32 C........................... GCAAAAGCGCCGCCGCCTGATGAACAACGTCA 115453 28 92.9 32 C.................C......... ATCTTCAAAGTCCATGCCGTAGGCGCAGTTGG 115513 28 89.3 0 C....................C..A... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.6 32 TTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TGTAGAACCCGAAGGCATAAGGGTCTTTCATTATTATTCTTGTCCCCATCAGTCAAGTTGGTCAGAGCATCAACCGCTTAAATGATGGGTTTGAGGGTAGTTGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCGGGGAGAGGAGCGGATTTATCCGCGAGACGTCATTGAGGCAAATGCATTTTGTACGACGAAAGGCTCATCCCGCACAACCTTGTGGGAGGGGCCTTGGCCGCGACAGCTTTACACGGGATATGTCAGGAAATGGAGCTTTTCCGGGCTGTCATGTCGCTGGGGACAACATCAGAAAGCATGTCGATGCCCCACAGCTTGCGAACATCCATCCAATGGCCAGAAATGACCCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCACGATAAAAAAAGGGGTAAAACGGCTGCTGAGGCATATTTTTCTTTGAAAACGGAGAGTTATCGAGCAGAGTGTCTA # Right flank : AAACCAAAGCCCTTGTAGTCCCACCTCACCTACAAGGGCTTCAGTCCATCGCCAACAGAACATCAGAACCAGGGAACAGTAGCCGTAGCACTCAACCCGTAGCTGTTGAATGTCCCTTCCTGGGCGCTGCTCTGTATCGGTCCATGCCGGATGAACAGCAGGAAGGTCTGGCCACTGGTACGGCTGCGCATCTGGACAAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATGCGTTCGCGGGCCTGTTCTTCCGTGAGGCCGTGCCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACTTGCACGCGGTTGACGCGCCGATGTTGCGCATCAGTAGGCACCGGGCTCAGTTCGCCTACTCGCACATGATCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGAGCATCCAGCGCTTGTGCACTGCCATGCAGGCGCAGGCGGTCGCCCAGGCCGATAACCTTGCCGCCAATCGCGGGAAAGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 124849-124219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPY010000004.1 Pseudomonas cichorii strain LCDW06 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 124848 28 100.0 32 ............................ ACGAGCGCGGCAAGAGCTGCAAGAAGCATTGC 124788 28 100.0 32 ............................ TCTTACTGGATGCAGAGACAGCGGAGCAAAAC 124728 28 100.0 32 ............................ GGACTGAAACGGCAAACGCCGGACAACACTGA 124668 28 100.0 32 ............................ AACAGCCCCGGCAACAGCAGCACGCCCGGTTG 124608 28 100.0 33 ............................ GGCCGCAACGCCAACAGCCTCGCCCGCAATCAG 124547 28 100.0 32 ............................ AGACCTGCTCGTGCGGGCTGCGCAGCGACTTG 124487 28 100.0 33 ............................ CCGGCCCGCGCCCGTACTACCTGATTGTTCCGA 124426 28 100.0 32 ............................ GTGACAGTTCTGAGGGCGTATCAAGCGAAGGG 124366 28 100.0 32 ............................ ACATGTACAGCCCGCTGGCCGGTATCGACGAG 124306 28 92.9 32 ...........C...A............ TACGACCCGGTCATTAATGGTCATCTGCTCTG 124246 28 82.1 0 ..CA.......A.C..........T... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TACCAACGGCGGTCGGCAGGTTGAGGATGTTTTTCTGAGCTGCCTACACGGCAGTTAAGTAGACACTCTGCTAGATAACCTTCCGTTTTCAAAGAAAAATCCGCACCAGTAGCTGTTTTACCCCTTTTTTTACCGAGTTTTATAAGTCATTGATTTTTAAAGAATGAATCTGAGGTGAAAAAAAGAGGGTCAAGAAAGGGTTCATTCCTGGCCCACTTCTGTATGAGCAATGTCGCGGCCAAGGCCCCTCCCACAAGATGAACTGCCTTCGATACCGAGTCGGACTACTCCCGTAGGAGGGGGCTTGCCCGCGACAAGACACACAGCAGGTAATACTGATTCTCACAGTGCAGCCCATTGCTGATCCTGACCCTCTTTTTTTCGCCCACCATGCACCCTTTTAAAATCAACCACTTACAGAACCGACGAAAAAAAGGGATAGAACGACCGCAAACGCATATTTTTCTTTGAAAACGAAAGGTTATCCAGCAAAGTGTCTA # Right flank : ATAATCAATCCAACCGCCCAACAACCCCACAAGCAATTGATTCAAATAGACTTTAACCCCCCCCTGCAGGAGCGCGCTTGCCCGCGACAACCATTCTGTAATCCCCTCCTTACAAGAACCGCAGACCGATCTTTCTGACTAGCCACCACCCACACCCTCAAAAAACATAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCTTTCTCCGGCCAAGTGCCATCACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCCAAGCGCGCGAATATTTATTACCTGCAGCATTGCCGGGTATTGGTAAATGGTGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACCGGTACTTCAGTGACTCAGGCGGCGATGCGGGAGCTGGCCAAGGCAGGCGTGCTGGTCGGTTTTTGCGGCGGTGGCGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 125290-125715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPY010000004.1 Pseudomonas cichorii strain LCDW06 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================== ================== 125290 28 100.0 32 ............................ AACATCCTCAACCTGCCGACCGCCGTTGGTAA 125350 28 100.0 32 ............................ ATCTTGCGACATTGAGAAGATGGAGCGGTTGA 125410 28 100.0 32 ............................ CACAGAATAGCCCTGGAGGCATTTCATGAACG 125470 28 100.0 70 ............................ TGTACGACCGGCGCGGTGTCACGATCAACCGCCTTAAATGCGGGAGTCGATGGCAATCACGGTGCTCTCC 125568 28 92.9 32 ...C.T...................... AAGTACTCGACGCATAAGGCGAACAAGGTTGC 125628 28 92.9 32 ...C........A............... ATCAGCTCGCCGTGAGACATTTCCTGGCTGAA 125688 28 89.3 0 ...C........A........C...... | ========== ====== ====== ====== ============================ ====================================================================== ================== 7 28 96.4 38 CTTAACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CAATGCTTCTTGCAGCTCTTGCCGCGCTCGTTTTCTGAGCTGCCTATACGGCAGTGAAGTAGACACTTTGCTGGATAACCTTTCGTTTTCAAAGAAAAATATGCGTTTGCGGTCGTTCTATCCCTTTTTTTCGTCGGTTCTGTAAGTGGTTGATTTTAAAAGGGTGCATGGTGGGCGAAAAAAAGAGGGTCAGGATCAGCAATGGGCTGCACTGTGAGAATCAGTATTACCTGCTGTGTGTCTTGTCGCGGGCAAGCCCCCTCCTACGGGAGTAGTCCGACTCGGTATCGAAGGCAGTTCATCTTGTGGGAGGGGCCTTGGCCGCGACATTGCTCATACAGAAGTGGGCCAGGAATGAACCCTTTCTTGACCCTCTTTTTTTCACCTCAGATTCATTCTTTAAAAATCAATGACTTATAAAACTCGGTAAAAAAAGGGGTAAAACAGCTACTGGTGCGGATTTTTCTTTGAAAACGGAAGGTTATCTAGCAGAGTGTCTA # Right flank : AAGCTGATACCGCACTGGATTGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCGATGGATATCTATCGCTTGAAGCACGTCTTCGCGACTGAAGTTGCTCCTACACAAGCCAACTCATTCGCAAAGGCATTCAAACCCAACCCTGCACAAACCTTCTAGACTTCCCATCCCCCATGGGCGATAACACTCGTCCATATCCCCTTGTTTGCCCATAAGCCCGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCCCATGTCTATGATCCCCACTGGCATGACAGTTATCTGGTGGGTGTCACGGAGCAGGGGGTTCAGCAGTTTCATTGCCGGCAGCAACGTTATGCCAGCACGCCGGGTCAGGTGTTCATGCTGGAGCCGGGGGAGATTCATGATGGGGATGCGCCCAGCGCCGATGGTTTCACGTATCGGATGCTGTACCTCGA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.43, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 136860-136412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPY010000004.1 Pseudomonas cichorii strain LCDW06 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 136859 28 100.0 32 ............................ TCAAAAAGGCACGCGACTGGATCCGCCAGCAA 136799 28 100.0 32 ............................ TCAGGCTCTGTACATCAGAACTGCCGGACTTC 136739 28 100.0 32 ............................ GGCCGCAGTAGATGCCCACGGGGCCGATATGT 136679 28 100.0 32 ............................ ATCGCTTTGCGCAACTGCACTTGATTGTAGTC 136619 28 100.0 32 ............................ ATGGAGAACGGCATTGAGGCGCAACTGCTGCA 136559 28 100.0 32 ............................ TTGCGATCCAAGAAATAGGCTTCAATTATCTG 136499 28 100.0 32 ............................ TGCGAGGCATCAGGAGCGCGTTGCGGTAAAGC 136439 28 89.3 0 ...........CA...........A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTCTGGTCAGTGAGTCCGGCGTGTTTGCAATGCTGGTTCATCATTACATCCCCGAGAATCGCGCCCTGCGTCACTGGCTGACCCATGACGTATTGCCGATTCTGCATCAGCAGCACGCTGTCACGGGCGATCAGCCTTGCCTGAATCAGATGCAATGGTTCGGCAACGCCCTGAGCGTATTGCAATGGCGCAGTGAGTCGTGGATTCGGTTTCGGGACATGCCCCATGTGGTGATGGAAGTGCCTCCCCAGCCCAGACGAGGAATATGGCGCAAACTGCTGGAAGCCTTGAGCGGCAAGCGGCTGGTGATGTGAAAGGCGATTGACCTTCGTGCCCGGCAGGCTTTTGGCAAAGGCCTGCCGGGTTCTGACCCTCTTTTTTCAGCCCCCTCCAGTCCCTTTTAAAATCAATGACTTATAAAAGCCTCGAAAAAAAGGGCAAAACAGCGCTCTGGCCATGTTTTTGCTTTTAAAACGAGGGGTTATTGGGCAGAGTGTCTA # Right flank : CCGAATTGCTCCAGGACCTGAAATTCCCAACCCCACTCTTTTCCCCCTCCCTATATAACCCTCCGGAACCGAACAGGTAAGATAACGCTCATATGGTTCACTGATGTGGCCGAGTGTTGAGGGTGGGTGTGTGAGCGATAGTAAAGTCCGGGTGAATAATCTGGTAACGGGTGATATCTCTCATCCACAAAAAGACATCTTTTTCGCAGCCGTCGAAACCACCCGGATGCCGATGATCTTCACGGACCCCAACCGTGAAGATAATCCGATCATCTTCGCCAACCATGCCTTTCTCGAGATGACGGGGTATGAAAGCCATGAAATTGTGGGCCGCAATTGCCGCTTTCTGCAGGGCCCCGATACGGATCGCGAAGTGGTCGCCGCCTTGCGCAAGGCCATCGAAAACCGGGAAGACATCGCCACCGAAATCCTGAACTACAAGAAGGACGGCTCGTCGTTCTGGAACGCGCTGTTCATGTCGCCGGTGTTCAATGACAACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //