Array 1 160569-159623 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCEU01000002.1 Escherichia coli strain SE228 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 160568 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 160507 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 160446 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 160385 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 160324 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 160263 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 160202 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 160141 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 160080 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 160018 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 159957 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 159896 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 159834 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 159773 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 159712 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 159651 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAATCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 187701-186269 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCEU01000002.1 Escherichia coli strain SE228 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 187700 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 187639 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 187578 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 187517 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 187456 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 187395 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 187334 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 187273 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 187212 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 187151 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 187090 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 187029 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 186968 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 186907 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 186846 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 186785 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 186724 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 186663 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 186602 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 186541 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 186480 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 186419 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 186358 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 186297 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //