Array 1 221561-224642 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKIR01000001.1 Rothia dentocariosa strain UMB0083 .16933_8_61.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 221561 29 86.2 32 A.G...........C.............C CTGCGCGCCCCAGTAGCAGACTGCTGCACCTG 221622 29 89.7 31 A.G...........C.............. TGCAGCGTCTTTATCATTTCCCTTCTCGCAA C [221648] 221683 29 86.2 32 A.G...........C.............C GCTTACCATGCATACCCGGAATATTCGACGCG 221744 29 86.2 32 A.G...........C.............C GCTCGATACGAACAGCCGCATCATCCGATGCA 221805 29 86.2 32 A.G...........C.............C GGGCGACCGCTTATCGGTGATGATGTGCGGTG 221866 29 86.2 32 A.G...........C.............C AGGTTGTGTGATATGTCCATGTCTTCACCCTT 221927 29 86.2 32 A.G...........C.............C AGCCATCGAATGCGCCACCTCTTTCAGTTCCT 221988 29 86.2 32 A.G...........C.............C TAACGGAATAGAACTGTACCGCACGAACTCGA 222049 29 86.2 33 A.G...........C.............A CCGTTCTGTTATCACTCTTGACCTAGACGGTGC 222111 29 86.2 32 A.G...........C.............C TTGACGACTATATACGCGAGATTTACAGCCGG 222172 29 86.2 32 A.G...........C.............C ATGTTGCCCTAATTTAATTCGCGATGTTGCCC 222233 29 86.2 32 A.G...........C.............C TAGCCGGGTGGTTGGATGATGCGAGCGCGCTA 222294 29 86.2 32 A.G...........C.............C TTACCCTAACCCGGCTAAGCGTGAAAATGAGC 222355 29 86.2 32 A.G...........C.............C AAGAGTTCCTGTACGGTCTCACTGACCTACGA 222416 29 86.2 32 A.G...........C.............C CGGGTGTATGCTCAAAGGGTGGACGACGGTGT 222477 29 86.2 32 A.G...........C.............C TATCGCAAATTAGCGCTGGTTTCATTTACCCA 222538 29 86.2 32 A.G...........C.............C ACCGGCGCGCGTTTCGGTGTGTATGTCGAACC 222599 29 86.2 32 A.G...........C.............C TCAATACCGTAGGCGTTATAGAACGCCTCTAC 222660 29 86.2 32 A.G...........C.............C CCACGCTCTTTGACGGTGTGAACGTCCGACCC 222721 29 93.1 32 A.G.......................... TATCGAAACCGCGTGCAGACCTACGGCGGTAA 222782 29 100.0 32 ............................. TAAGTAATGCGTGCAGCACAGTTTAGGAAGAC 222843 29 100.0 32 ............................. CGGGGGAGTGTAGCGTGTCTAACTCTGTGAAG 222904 29 100.0 32 ............................. TTCCGGGGCATTCCGTTGCGAACCATTCCCGA 222965 29 100.0 32 ............................. CCGTCTTCAAAGCCACACGATCTAACGGCGGC 223026 29 100.0 32 ............................. CTGTTGCCTTTGACTGTATGGTAATTCATTCC 223087 29 100.0 32 ............................. CGGGGCAGACAGTCAGCTATAGCTTGAATTCA 223148 29 100.0 32 ............................. CCCTAGACCCTCTGCTAGAGGTTTTGACCTCT 223209 29 100.0 32 ............................. CATGATAGACGAAAAATCGTAATCATCTAATT 223270 29 100.0 32 ............................. TATTCCGCCACGCTCATTATCCCTAAGAGCGA 223331 29 100.0 32 ............................. GAGGCGAGGGCGCGGAGATAGAAAGCTGGGTT 223392 29 96.6 33 ............................T TATTACTCACCAATATCCTATTGGTGGGCCGAC 223454 29 100.0 32 ............................. ACGGCGACCGTCCGAGATACAGCAATTATCTC 223515 29 100.0 32 ............................. GAGGCGAGGGCGCGGAGATAGAAAGCTGGGTT 223576 29 96.6 33 ............................T TATTACTCACCAATATCCTATTGGTGGGCCGAC 223638 29 100.0 32 ............................. CAGACCCAGAGGATTCGCCATACGGGCTTCTT 223699 29 100.0 32 ............................. CAGACCCAGAGGATTCGCCATACGGGCTTCTT 223760 29 100.0 32 ............................. GGAACAGTTAGGTACTCTACCCGGCGATGAAG 223821 29 96.6 32 ............................A GAACCTGACTTCTTGGTGTGGTGCCCGGCGTG 223882 29 96.6 32 ............................C GCCATTGACCGCGTGGCGGAAGAGAACGAACG 223943 29 100.0 32 ............................. TCATGCTTTCGTTCCTGTACTAAATCGCGCAA 224004 29 100.0 32 ............................. TTGAGGTAAATCCGGTTTGCTTCAGACATGGT 224065 29 100.0 32 ............................. GTCTACCTACCGGCGGGTATATATAAGGTCTC 224126 29 96.6 32 ............................T GCGCTCGCTACACCCCGCAGAGAAAGAAAAAG 224187 29 100.0 32 ............................. TCGATAGCCTCTTCATCGGTCTTAGCCGAATC 224248 29 100.0 32 ............................. AAGGTAAAGCATGGCAGGAGGAATAGAGCTTG 224309 29 100.0 32 ............................. CATTTGGAGTTTGGGATTCATGTCGCGCGCCT 224370 29 100.0 32 ............................. CCCTAGAGAAACCTCATGCTCTTTCGCCCATT 224431 29 100.0 32 ............................. CAGATGTTCGTACCGTTCTGACGAACGTGTTC 224492 29 96.6 32 ............................C CCGCTTTGGAAGCACTAGGGCCGCGCCGCGCG 224553 29 93.1 32 A.G.......................... TATTTTCGCCTCCACAGGCGGACTCTATGTTG 224614 29 79.3 0 A......................A.CTTT | ========== ====== ====== ====== ============================= ================================= ================== 51 29 93.9 32 GTTTTCCCCGCACCTGCGGGGATGAGCCG # Left flank : GGGCTCTGGAACGGTCGGGGAGAGGAGCAAGAAAGCGGGTACAACTATGGAGCTGATGAGTGATGATTGTTGTCGTATTATCCGCATGCCCGGTTGGTTTACGAGGTGATCTTACGAGGTGGCTATTAGAAATTAGTGCTGGCGTTTTTGTAGGAAAAGTGAGTGCGCGTGTGCGGGAGCATCTATGGAATCGTATTACGGTTACTTGTAGTGATGGACGTGCTCTTATGGTGTACTCGGCAGATAATGAACAGCGTCTTGATTTTAAGATTCATAATTATCCATGGGAGCCTGTAGATTTTGAGGGGGTTAAACTTATGATGCGTCCGTCTACTCCAAAAAAGGGGTTGGTACCTCGAAAAGGATGGAGCAAAGCAAGTCGATATAGGCGTGCTTCACGACGCAGGTAAGAGCATATCGTGTATTCTTGGAAGTAGGTTATGGGCTTTAAACTAATACTAAAACTTGAGGTATGGGGGTAAAACCCCATGTCAGAAAGT # Right flank : TTCAACCCTATGAGGAATACTCCATTAAGTCTAGTGACGCATATCATGCTTACTGGAGTTGGTGGGGTATTCCCTTAACTGTATAGTTATATATGTTGTTCGGGCGGGTCCCGAAAAACAGTCCGGCCCCATCGTATAGCGGCCTAGTACTCCGCCCTCTCACGGCGGCAACACCGGTTCAAATCCGGTTGGGGTCACACTAGGAAAAGAGAATTCCCCGGTTCAGGCGAACCGGGGAATTCTCTTTATCTTTATAAATGCCAAGGGGGTCAGGATTTTCTAAAAGGCACGTATATAACCTTTTCAGCAAAACCTAACATGCTCGCGTCGTAATGTGAATAACCAGAAACGGGGGAGCAGCCTACTTATTCTCTCCGCTCGCACTCGCAGACCCTTGCGCACTGGCAGAAGCACCCGCTGCGGCAGGAGCACGGTGCACCATACGCCACGTTCCCTCAAGATAATGAGCCGTCACCTGGCCCGAGACAACACCGCTCGGC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCTGCGGGGATGAGCCG # Alternate repeat : TTCCCCGCACCCGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //