Array 1 19217-16547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAV01000008.1 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 strain DSM 20081 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 19216 28 100.0 33 ............................ AAAATCGTGTGCCCGTCAAGCCAGCCGGTGATT 19155 28 100.0 33 ............................ TCACACAAAAAGCCCGCTAGATTGAATGTCTAG 19094 28 100.0 33 ............................ TGTATTCAGTTTCGTTTGTTTGATCCTTGCCAT 19033 28 100.0 33 ............................ TCAATTTGCTGTGAGTGTAATAATTGATGGTGA 18972 28 100.0 33 ............................ TTAAACCCAAACTATAAGCGTATGGTTCGCTCA 18911 28 100.0 33 ............................ TGAGACTCATTGCGCCGCTACTTCAGCGGGCTA 18850 28 100.0 33 ............................ TCTTCGATACTAATCGAAATCGATTCAAACCCT 18789 28 100.0 33 ............................ TATGGACTAGAGGGATGCACCAGCAAGACAAGA 18727 27 96.4 0 ...........................- - Deletion [18701] 18706 28 89.3 33 TG..C....................... CATAAGCCCGGCCGGCTGCCTTTTTTGACGTGA 18645 28 100.0 33 ............................ TAATTCGTTTTTGGGCGTGTCAGAACCTTATAA 18584 28 100.0 33 ............................ TAGGGCTTTGAGTTACTACGGCTATGAAATGGA 18523 28 100.0 33 ............................ GAAATGTACAAAACAGGCTTGTCTCAAGCCAAG 18462 28 100.0 33 ............................ TAACTTAATTTGGATTGCTACCAAAAAGCCGGG 18401 28 100.0 33 ............................ TATCAGCCTTTTCGAGGTAATCACGGTAGATTG 18340 28 100.0 33 ............................ CCACGGGGACGACTTCGGCCAATGGACCTCCGA 18279 28 100.0 33 ............................ CTTTACAAGTTGGCCCAAAAGTTCAGCGGGTAC 18218 28 100.0 33 ............................ CGATACTGCTGCTAATCTGTTAGCGGAGGAAAA 18157 28 100.0 33 ............................ TCATTTTGTTAAATTTGTTTACTGAATAATTTT 18096 28 100.0 33 ............................ TAATCAAACTTGACTAATTCATTTTCAAAAGTG 18035 28 100.0 33 ............................ TCAGATTGTCCATATCTGCTCTCTGGCGCCTGC 17974 28 100.0 33 ............................ TATGTTTGAACTACTTGACGGGGCGGCCTTTGC 17913 28 100.0 33 ............................ CTGAAGTATGTTGCCGTTGCATGCACTTCAGCA 17852 28 100.0 33 ............................ TTAAATCGAGGTGGTCAAACGTTGTACTTTAGT 17791 28 100.0 33 ............................ TATGCACATTTGCAATCTTTATCTTAAAAGGAG 17730 28 100.0 33 ............................ CACAGCGAGCGTTATTGCCCAAAACATAGTGTT 17669 28 100.0 33 ............................ TACTACAGCTTAAAACAAATTTTAAAGCGAAAA 17608 28 100.0 33 ............................ CATCCCGCAACTCCTTGACGGGGCGGCCTTGGC 17547 28 100.0 33 ............................ TCCGTCTTTATACTCTTTATAGGCCTTTTTCGG 17486 28 100.0 33 ............................ CTTAACCATGCAAGAAGATGAAACCGGGCTCAA 17425 28 100.0 33 ............................ CTTTATAACTCTTGGTTTCGTGCCCACTACAAG 17364 28 100.0 33 ............................ GAAAAAAGCCCGCTCAGGTCAAAAGCGAGCACA 17303 28 100.0 33 ............................ TGTTAGTGCAGGCATTTATAGAGAAGAAAAGAA 17242 28 96.4 33 .....................A...... TTATAAGGAATTCAACGGGAACAAATTAACTAG 17181 28 100.0 33 ............................ TTATTGTAATTGCTGCCGGGGCTTATGCCCTCG 17120 28 100.0 33 ............................ TGTTAGAATGGGCCAGTACGCTATCTTTTTGTG 17059 28 100.0 33 ............................ TCATAGTTAAGGGGGATGCAGAAAATGACCAAT 16998 28 100.0 34 ............................ TATCCTTAGTCATTTTTTCCTCCTTATTTTTTTC 16936 28 100.0 33 ............................ CTTACGGTAGATCAGACGATACTGACAGCCAGG 16875 28 96.4 33 ..................A......... TGTTCTTGCCCAGAATGATAAACTCCTGCCCGA 16814 28 100.0 33 ............................ TTTGCTGTCAGTGTAGTGATCGACGGGGAACCA 16753 28 100.0 150 ............................ TGGGGGGCGTAGTACACCACACTGTTATAGATCTATTTTACTTAATCGGCTGTGATCTCACTGCCATTAGTGAGTAACATGGGGCGAAACAATATTCCTCACGTATGTGAGGAGAATTCTTTCTTTATGCTATTGTGTTTTTCGTACTGT 16575 28 78.6 0 ...........AT.T.C....A.....A | T [16568] ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 43 28 99.0 35 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACCGAAACTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATCACTTCTGAAATGCTAAGTAAGGAAGGCGTTCCATTGCAAGATGCATTGGAAGAACTGACTGACTTTGTTGGAAATGTACCAATTGTTGGGTACAATTTTAGATTTGATTCTGCATTTTTGAATAGGGATTATCGGAAATGCGGGATGCAAGAATTGAAAAATGAGATCAAGGATTTACTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAATAAGGTGCCGCATAACGCTGTGTCTGATGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTCTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : TAAGTTTCAGTTAAAGCACCAGCAAATTTCAAGGATCTTTGGTAGAATAGAGGTAATAGAGAAGGAGTGAGGAACAAGCATGAGCATTTACGGTAAGTACGCCGATTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAGAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGCGAAGAAAGCATGGCGCAAAAGTGCGAGAGAAAAGGTTTGCCGCTGATGCCAGAGTCTGCATTGATCGAAAACCGGGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCATGGCAACAAGCCTGGCATCT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //