Array 1 13093-8641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWB010000041.1 Erwinia amylovora strain Ea12 Ea12_contig_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 13092 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 13031 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 12970 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 12909 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 12848 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 12787 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 12726 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 12665 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 12604 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 12543 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 12482 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 12421 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 12360 29 100.0 32 ............................. ACAAAAGACAACACCCCCTTACCCCCCCACGC 12299 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 12238 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 12177 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 12116 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 12055 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 11994 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 11933 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 11872 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 11811 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 11750 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 11689 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 11628 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 11567 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 11506 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 11445 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 11384 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 11323 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 11262 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 11201 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 11140 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 11079 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 11018 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 10957 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 10896 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 10835 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 10774 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 10713 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 10652 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 10591 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 10530 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 10469 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 10408 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 10347 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 10286 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 10225 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 10164 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 10103 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 10042 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 9981 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 9920 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 9859 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 9798 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 9737 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 9676 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 9615 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 9554 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 9493 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 9432 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 9371 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 9310 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 9249 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 9188 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 9096 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 9035 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 8974 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 8913 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 8852 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 8791 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 8730 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 8669 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 73 29 99.4 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TGAGCGGGGATAAACCGCGAACCTATGCGGCATTAGCGGATGCCGCCG # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11083-13371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWB010000039.1 Erwinia amylovora strain Ea12 Ea12_contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11083 29 93.1 32 .............GA.............. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 11144 29 93.1 32 .............GA.............. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 11205 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 11266 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 11327 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 11388 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 11449 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 11511 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 11572 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 11633 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 11694 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 11755 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 11816 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 11877 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 11938 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 11999 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 12060 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 12121 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 12182 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 12243 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 12305 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 12366 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 12427 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 12488 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 12549 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 12610 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 12671 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 12732 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 12794 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 12855 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 12916 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 12977 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 13038 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 13099 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 13160 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 13221 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 13282 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 13343 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22835-23163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWB010000039.1 Erwinia amylovora strain Ea12 Ea12_contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22835 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 22895 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 22955 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 23015 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 23075 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 23136 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //