Array 1 190523-191100 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXPX01000008.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 190523 28 100.0 33 ............................ TGCCTCCAATGCAATCACCGGCCTGCTAACCGG 190584 28 100.0 33 ............................ CGTGTCGAAGCGCACCTCGTAGCCGAGCCAGTC 190645 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 190706 28 100.0 33 ............................ TCCAGTCGTCGTAGTCCTCGGTAATGTCCTCGA 190767 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 190828 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 190889 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 190950 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [190959] 191012 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 191073 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 199854-200559 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXPX01000008.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 199854 28 100.0 33 ............................ TTCGCATGGCCCGATCTCGGCGCCGCCGGTGGC 199915 28 100.0 33 ............................ TGACGGACATACCGCGCTGCCCGGTCTGCGGCA 199976 28 100.0 33 ............................ CCGTTGGCGGGACAGTTTTTTCACTGACAGGTA 200037 28 100.0 33 ............................ TGGCACTGTCACTGTCGAGACGATATCGACTGC 200098 28 100.0 33 ............................ TAGATACGGCTGCATTTGGCGTGAAGGGGTGCA 200159 28 96.4 33 .....................A...... TACACTGAGCATGTACGCCGTGGATGCAGTAGC 200220 28 100.0 33 ............................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC 200281 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 200342 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 200403 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 200464 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCTGGCATTCGTTCT 200533 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 12 28 98.5 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1933-811 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXPX01000038.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1932 29 93.1 32 ............CA............... GGGGCCAGCTCCCGGACGAGAAATGTGACGCC 1871 29 93.1 32 ............CA............... CGATTACGGAGTCGTTCACAAACCGACCACCG 1810 29 100.0 32 ............................. TTGCGGACGTTCAGACGCTGCATGGCGTTCTC 1749 29 100.0 32 ............................. TTATCAATGGGGAAAAATCTTCATTTGTAACT 1688 29 93.1 32 ............CA............... AATCCTGGAGCTGGAAAGGGAGCTTGCCTCGC 1627 29 93.1 32 ............CA............... GCACCCTGGGATGCCTTTTGCACAGTGTCAGG 1566 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 1505 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 1444 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 1383 29 96.6 32 ..............A.............. CACTACCAGATCCGAATGGACACCCGTAATGA 1322 29 93.1 32 ............CC............... GAATGAGAGCAAAATAATGAAATTAACAGGAC 1261 29 100.0 32 ............................. CTAATGAGCGGTATATTTTTTCTAATCTGAAA 1200 29 93.1 31 ............CT............... TGACTTTTAAAAAAATCAGCTGAAACAGCCG 1140 28 93.1 32 .....-.......C............... TGCGTGCAGTAAACGAAAATACATCGGTCAAT 1080 28 96.6 32 ..........-.................. AATGGTGACAGGCAGTGCACCGGCCTAGAGGC 1020 28 93.1 32 .....-.......C............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 960 29 100.0 32 ............................. TAAAAGCGTTTTACATGCATTCAAAAAAGTTA 899 29 96.6 32 .............C............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 838 28 75.9 0 ..........A.CA.........-.C.TT | ========== ====== ====== ====== ============================= ================================ ================== 19 29 94.7 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CACAAAGTCACAACAACAGTCAGCAAAAACCACGCGATGATCGTTATTGAGGATTTGAAGGTTTCCAGCATGTCAAAATCTGCAGCGGGTACGGTAGATGAGCCGGGGCGCAACGTTGCGGCAAAATCAGGTCTTAACCGGGCGATACTGGATCAGGGCTGGTACGAAATGCGCCGCCAGCTCGAATATAAGCAGCGCTGGCGTGGCGGGGAAGTGCTGGCAGTAAATCCGGCCTACACCAGCCTGAAATGCGCCTGCTGTGGTCATACCGCGAAGGAAAACCGTCAATCGCAGGCAGTATTTGTCTGCGTGGCGTGTGGTTACGAAGCGAATGCTGATGTAAACGGCGCGTGTAATATTTTAGCGGCAGGACATGCCGTACTTGCCTGCGGAGGGACGGTGCAGTCAGTCCGCCCGATGAAGCAGGAACCTGGCACTGAGCGATCAGTCGTCACCCACTAATAATGGGAATCCCCCTCCTGAATCTCGCAGCGTGAAGG # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //