Array 1 171587-170342 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGR01000026.1 Pasteurella multocida strain 8522APM isolate swab isolate 1 contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 171586 28 100.0 32 ............................ ATCATCTGCTGTCGTTAAATCTTGCAAATCCG 171526 28 100.0 32 ............................ TTCACCCCGCTTTCATCGTGTGCGTTAATGAA 171466 28 100.0 32 ............................ TACTAAGACTACTTTGATCACGTCACCTTGAT 171406 28 100.0 32 ............................ TTGAGCAGGAAATATTATGGAATTCATTCAGA 171346 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 171286 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 171226 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 171166 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 171106 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 171046 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 170986 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 170926 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 170866 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 170806 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 170746 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170686 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170626 28 96.4 49 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCTTGAAAT 170549 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170489 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170429 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 170369 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================================= ================== 21 28 99.5 33 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19946-22613 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGR01000022.1 Pasteurella multocida strain 8522APM isolate swab isolate 1 contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19946 28 100.0 32 ............................ TCCATGTTAATCGTCTGTTTGCTTAACTTGTT 20006 28 100.0 32 ............................ TACATGTTAATCGTCTGTTTGCTTAACTTGTT 20066 28 100.0 32 ............................ TACACGTTAATCGTCTGTTTGCTTAACTTGTT 20126 28 100.0 32 ............................ TGTCTGTTTGTCTTTCACTTCTTTAGTTACTA 20186 28 100.0 32 ............................ ACGCAGGCGAACCTACGGATAAACAATTTAAG 20246 28 100.0 32 ............................ AGTTGTTAATCTTATGATAAGCACTACGTATC 20306 28 100.0 32 ............................ GTGTCTGCTAAGTTTATACGCTCAGCACTAAT 20366 28 100.0 32 ............................ TTTAGTTTCACTTAGTTGTACCGTGAGTAACC 20426 28 100.0 32 ............................ TTAGCATACTCAAAGCAGAACGCTAAGAACTG 20486 28 100.0 32 ............................ GTTTGATAGCTGATTTAGTGCGAGCTCTTACG 20546 28 100.0 32 ............................ ACTGGTAGCGCGCCAATACTCTGTATTTTTCT 20606 28 100.0 32 ............................ TCCATAAGGTCGCTTGTCGCAACCATTATTCT 20666 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 20726 28 100.0 32 ............................ GTCGGAGCTTAGGACGGGGGAGAGTATCGTGT 20786 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 20846 28 100.0 32 ............................ ATGACTGCCGCGCTTGATAATTGCAACAGCAA 20906 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 20966 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 21026 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 21086 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 21146 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 21206 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 21266 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 21326 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 21386 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 21446 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 21506 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 21566 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 21626 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 21687 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 21747 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 21807 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 21867 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 21927 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 21987 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 22047 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 22107 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 22167 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 22227 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 22287 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 22347 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 22407 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 22467 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 22527 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 22587 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //