Array 1 637-1206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEXN01000031.1 Acinetobacter baumannii 1106579 ab1106579.contig.30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 637 29 96.6 31 ............................T GAAAAACGTAACGCAGAACTACAAGCTGTTA 697 29 96.6 31 ............................T TCCAATTCGCATAATGAGCACTGATGTTAAA 757 29 100.0 31 ............................. AACGGTAAAGTCATTCCATTTGTACGTTTAT 817 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 877 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 937 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 997 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 1057 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 1118 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 1178 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GCGTAGCAGGATCAAACCAAATGGCAATATTTCCACGATTAATGAGAGCTCGGTTATATGAAGACCAATTGGTTGTGCGATAAATTTTAGGTGTCGACTTATTCATTTGAAAATTATATTGTGGAATAAGCCTTTAGAGATAGGTTTGTGCAACAAAGCCCCCTAGATCTGTCATGAGTTCATAAATTTCATTACACGATAAAAAAGTCATTTCACTTAACCTACATATCATTTTGAGGTATTTCTAACGAATCAAGAAACAAAATTCTAATGAAGAAACAGCGATACTATAAAAATAAAATTAGCTGCGATGGAAGGCTACTCTAAGTCGATATAAAAATTAAGCTTCTGTTGCGTACGAGAACCTTATTTTTAGTAATCTATTTTTGCATCACGCCAAAGCCATAATCATAAGACCAAGTAGGCACTTCATCTCTATTGTAAGGTGTTAAAGATATACGGCAGCCTTGCTCATTGGCAATTTGGTACTCTGCTTCGGA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACTGATAAAACAAATAATTGTTTTTTAAAGTTAATTTCAATTCAAAAAATAACAGTGTACACAATAGTGTACAAATTATTTGTTACTAGGGCATTTCTCTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCTTTTAGTGGATCGGATTATGAGGCTCGTTATTTGGCTTCAATAAATTTATTGAGCGCAAAACCATATTTGGTGATTGGATTTTAAATCTTGAATTAACTTAGCCGTTCAAGTGGCTGATTAAGTAGCTTGGTCGCGTTTTAAGTGTGAGCAAGTTATAAAAATCACGAAATACTTTCGATTGCAGATACGTGCATCCAGTCGCGTGTACATTGCCGAAGTTGAGGATTTAGATGGTGGGGGGGTATCCCTATGTTCAGGTTATTTGCAGAAGTAAACCGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29307-34800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JEXN01000004.1 Acinetobacter baumannii 1106579 ab1106579.contig.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 29307 30 96.7 30 .............................A AACAGGTGAAAGATCAAGTTGCCTCACAAC 29367 30 93.3 30 ............................TG AATGTATCGTCTCAAGCAAAATCAGCTCAT 29427 30 100.0 30 .............................. ATTGAAATGACGATGGTGGAGTGGGGCTAT 29487 30 93.3 30 ............................GA ATCTGCACCTAATGCTAATGATCGCACATG 29547 30 93.3 30 ............................TG AAGACACTTTTCTATACCGCTACGTTACAT 29607 30 96.7 30 ............................G. GGTTGCAACTTTGCTAAAAGTGGTTGGGAA 29667 30 96.7 30 ............................G. CAAAGTGTCTAGACTACGCCTTGAGACACT 29727 30 96.7 30 .............................C ACCAATTGACGCTGACCTTTAAAAGTCAAA 29787 30 100.0 30 .............................. CTTCCGCAATGGCCTTTTTGAATGCTTCAT 29847 30 93.3 30 ............................GA CTCATATGGATGAAATAAAGCAGCAGCAGA 29907 30 93.3 30 ............................TC CCCAATAGACTGAACTGTCGAAACGCTTAT 29967 30 93.3 30 ............................GA GCTTTGTAATAAAACAAGATGTAATCGGGG 30027 30 93.3 30 ............................CA TGGTTTTTCCCCTTTATTTGAGCAATCGAC 30087 30 96.7 30 .............................A AGGCTTTGCTTATCGATGCGGATGCCGGTG 30147 30 93.3 30 ............................TG TACGTCAAATTACTTCTTATTGTAGTTGGG 30207 30 96.7 30 ............................T. CATCATCAAATAAATCTTCGTATTTAGTGA 30267 30 93.3 30 ............................TG CTGCTTGAACAACATGAATTGCCCATTCAG 30327 30 96.7 30 .............................A AAATATTGATACGATGGATTAACAACAGAA 30387 30 96.7 30 .............................G AAGCGTCATGAATATTTGGTTTGGCTTGAA 30447 30 93.3 30 ............................TG ATCATTAGTGCCTCTTCGGAAATCAACTTT 30507 30 96.7 30 .............................A AGAGTATGTATTAGAGGGCTATGCACTTAC 30567 30 93.3 30 ............................TG AAAATAATTAAATGGTCTATCACCGTCTTC 30627 30 96.7 30 .............................G TAGATGCAGCACACAGCAATCAGGGCGCTC 30687 30 96.7 30 .............................G CGCGGAAGAGCATTCGGGTGAGTTGGATTA 30747 30 96.7 30 .............................G GCAAAAGGAACGGCTGGCTAACGCCACTAT 30807 30 96.7 30 .............................C ATTCCAGCAAACAACAGTGTAGATCCAATT 30867 30 93.3 31 ............................TC TTTCACAAAAAATGATGGTTATTTTGAATGT 30928 30 96.7 30 .............................A TAAACAGCATTTCATCAGTTGCGTAATAAA 30988 30 93.3 30 ............................TC CAAAAGAGCAAGCAGAATTTAGTGCATGTA 31048 30 93.3 31 ............................CA CCAACCGACAATGTAGCATCGGCAACTAAAC 31109 30 93.3 30 ............................TA TGACACGCTATCAAGTGACGGTGCAAATAA 31169 30 93.3 30 ............................TG ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 31229 30 93.3 30 ............................TG CTACAGATATAACTAATCAGTTAAATAACT 31289 30 93.3 30 ............................TA TCCATTTTCTGATGGTGGCGCATTCTCTTC 31349 30 93.3 30 ............................TC AAGCAAATCCCGATGATCCTACAGCACCTA 31409 30 96.7 30 .............................C AAGTTAGAGCTATTAGAAAGAATTATTTAA 31469 30 96.7 30 ............................T. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 31529 30 96.7 30 ............................T. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 31589 30 93.3 30 ............................TA AACCATTATTAGGGTTTACGGTATTACTTG 31649 30 96.7 30 .............................G TCCATAAGACCCTCCATTTGTTTATATCTT 31709 30 96.7 30 .............................G AAGGGTATAGCAAATATCGTGATGGAAATG 31769 30 100.0 30 .............................. CATCGCCAGCAACAAACTGCAATGAGCCAG 31829 30 96.7 30 ............................T. GGTGTGATCATCAATACAGATGGGACAGGT 31889 30 93.3 30 ............................CG ATAGAAGATACAGAAGAAAATAATGCTATT 31949 30 96.7 30 ............................G. CAACCAAAGAACCCCAAGCAAATCGAGCAA 32009 30 100.0 30 .............................. TATCTAAGCGTCCCATTAGAAAACCTTTAT 32069 30 96.7 30 ............................T. TCAGATGAAACCATACGCACTAAATGCATT 32129 30 100.0 30 .............................. GTAATCTTGGTATGGGAGGTGTAAAGCCAG 32189 30 93.3 30 ............................TG TTGACCCATCTATTGATGCATCTGTAAATA 32249 30 93.3 30 ............................CG ACTGCTCCTAAAGCTCCGCCGACTGACATT 32309 30 100.0 30 .............................. GTGAACATGCATGCATTGATGCAATATGCG 32369 30 93.3 30 ............................CC ACTGTAGTACGAGTAACGTTACCGACTAAA 32429 30 100.0 31 .............................. GACATACAAACCCCTCAATAAAAGATGGGGC 32490 30 96.7 30 .............................C AAATCTTGATGACATGCTCAACAAAACACA 32550 30 96.7 30 .............................G AGGGTTATGTTTTGGTTTCTAAGGATAAGT 32610 30 100.0 30 .............................. CATACATTAACTTTAAATAATCATTCTGAC 32670 30 96.7 30 .............................C ATGAAAAACTAGCTTCCACGACATCAATCC 32730 30 90.0 30 ...........T................TC TTGCTGTGCATAAGCCTGTAAGTTATTTAA 32790 30 96.7 30 .............................G TTGCCCGGATCACGACGATCATTAGAATAA 32850 30 96.7 30 ............................T. GGAGTCATCAATAAGAAACAATCCATTTAA 32910 30 96.7 30 ............................T. CTGGATCTATTCCAAAGTGTTTGCAAATTT 32970 30 100.0 30 .............................. CTAATCGATGGTGAAGATTTTGAACAAGAT 33030 30 96.7 30 ............................G. TATCTCAATGGTGTGACTTGTTAGCACTAG 33090 30 96.7 30 ............................T. AATGCAATTCGGAGCATGGCGTACCGAAGA 33150 30 96.7 30 ............................T. GTGTGGACTCCTCAATCAGCATCTTGAAAT 33210 30 93.3 30 ............................GC TCACAAGTCAAATACTATTTTGCATTATTT 33270 30 100.0 30 .............................. CTTTTTGCTTATAGTAACAAGTAGCAGAGT 33330 30 93.3 30 ............................GA ACTGCAATGCTGTGAGTAACGAACCTTGAT 33390 30 96.7 30 .............................C TTACCAGACACAGCACCTTCTTGAAGCATC 33450 30 100.0 30 .............................. GACGGTTAGTTACTTTTGATGTACCGCCAC 33510 30 96.7 30 .............................C TAACTCACCGCGATAAATAGACGCGATACC 33570 30 96.7 30 .............................G AGACACAGAAAAAGAATGTGAACAATGGGC 33630 30 96.7 30 ............................G. CGATTAAATCAGTCAAAGGACCCTAAGCCA 33690 30 93.3 30 ............................TC AAACTCACAACCTAGAAAAGATTGCTAAGG 33750 30 100.0 30 .............................. GAAAAAGCCCCATTCGTTGTGAATAGGGCT 33810 30 96.7 31 .............................C CAAAAGCTTTACGGTAAGACACGTTATGCAG 33871 30 93.3 30 ............................TA CGAAAACAAAAGATACTCATGCACCAGAGA 33931 30 93.3 30 ...............T.............A CAGCATTTACACCAGCAACCTTTAAAGCAG 33991 30 93.3 30 ............................TG TTACATGCCCAATTGGTTGGCGCATGTCAT 34051 30 96.7 30 ............................T. CTAAGCGAAGGCTAACGCTCACATTCAAAA 34111 30 93.3 30 ............................TG TAAAACCGAATCCCAAGCTGAATAGGTTTT 34171 30 93.3 30 ............................GG ACATGTGAGCTTCACACCATCCTTCAGGCA 34231 30 96.7 30 ............................T. GTTGCGGCTCTCGCATGATGTGGTTTGATC 34291 30 96.7 30 .............................A CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 34351 30 96.7 30 ............................T. GATGCTGAAAACTTCACAGCAGGCAATCCA 34411 30 93.3 30 ............................TG TAAAGGATGTGAGGAACGTCGTGAGTGGAT 34471 30 96.7 30 .............................A CTGACTAGTGATTTGAGGAATGTGCTCACC 34531 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 34591 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 34651 30 93.3 30 .................T...........A ATAACCACGGTTATGGTAAGTCACTTTTAC 34711 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 34771 30 66.7 0 ...T...A...T.....T..C...AGCGT. | ========== ====== ====== ====== ============================== =============================== ================== 92 30 95.2 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //