Array 1 71-832 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMC01000029.1 Siminovitchia fortis strain DE0097 NODE_29_length_44253_cov_30.047967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 71 36 86.1 30 CCAGG............................... ATGCTAGTTTTTCGTTCATCTCTTATCATC 137 36 100.0 30 .................................... TATACTCATTTACAAATTCAATACCCATAC 203 36 100.0 30 .................................... GTCAGTTCGTTTGTATTCGTAATATTAATC 269 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 335 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 401 36 100.0 30 .................................... ACGTAATTATCAATTTCCCGGAACGTCTGG 467 36 100.0 30 .................................... TAGAGCTTGGGTTTTACCGCATGATGAAGT 533 36 100.0 30 .................................... GGCATGAAGATATTCTCGTATTCTACAAAA 599 36 100.0 30 .................................... TTGGTTGTTTGATTTTAATTCGTTAATAAT 665 36 100.0 30 .................................... CTTTCCCCGTCCATGTTTTCTTCGGTTTTC 731 36 100.0 30 .................................... GACTGAATCACATCCCCCAGAGGCATTCCA 797 36 86.1 0 ..T..........C..G......A......A..... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 97.7 30 ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Left flank : TTCCTAAACCTAATTATACCAAAGGCTGGAGCCCTTTTTGTATTTAATAACTAGATTTTACTTTCGTAATC # Right flank : CGATAACTGTCAATTGGAGTTTCATCTCTTTTTTCTTGGAGGTAAGCTTGCCCCTTCAGTAACTGCTAAAACTGTCAAAAAAACCGTTCCGCCAGCGCACATTTTAATGATAAAATGGAACTAAATACTGGACCATGAGAAAGGGATAATATGGAAAAAGGATTAAAGTACAGCTCTACCATCAAGTCACGACCCTTCTTATACAAGGAGACCAAAATGCTGGCAGAACTGCATTTGAAGGGGTTGAATGAACTCGAATTGAAAGAGAAAGTTATCAGCCAAAATATCTTTCAAGTCAAAACTGAAACCCGCAAAAGAGAAATTGCTTCAGCCATAAAGGCACGTTTAAAAGTGCTGGATGATTACCTCATTAGGAAGCTTTTAACTACTGACATACATACAAGTAAATTGATCGTACTGTACGCTATCCTTAAAACGGACAGGCTGTTTTATGAATTTATGTATGAGGTTTTCAGTGAGAAAATTTCCGGGCGCGATTT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 17814-14612 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMC01000067.1 Siminovitchia fortis strain DE0097 NODE_67_length_17928_cov_30.410733, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17813 36 100.0 30 .................................... CTGCCGACAATGCTACGGATACCTGCGATA 17747 36 100.0 30 .................................... CGGCTTCATGCCCGTTTGCTCGTAATAGGA 17681 36 100.0 30 .................................... GGAGGCCCTTTACAATGAAAAAACTACTCT 17615 36 100.0 30 .................................... TAGGGAACTTGAGCAATACGAGGCGGAACT 17549 36 100.0 30 .................................... ACGATTTCTTTATCGGATTCCCACGGCGGA 17483 36 100.0 30 .................................... CATTAATCTTTGCTTTTCTTCCGGTGTTTT 17417 36 100.0 30 .................................... AATGCTAGTTATGTAACAACAGGTTTGTTA 17351 36 100.0 30 .................................... TTAGGCGGGAAGTTAGCGAGGTCATTAGAG 17285 36 100.0 30 .................................... GATAGCCTTTCTCATATTCGTGTTTTTCTG 17219 36 100.0 30 .................................... CGTAACAAAACACGCTTCTGTTACATTCGA 17153 36 100.0 30 .................................... AGCCGAAAGCCGAATAAGGCTTTTTTATTT 17087 36 100.0 30 .................................... TGTAATGAGGCCGATCAGGCATCACTTCCT 17021 36 100.0 29 .................................... TAAAGGTTCGAGGAAACATACTCGCCAAT 16956 36 100.0 30 .................................... CGGTTTTCAAACGGTACACCGGTGTACCAA 16890 36 100.0 30 .................................... CCTCTTGCGAATGTTCATCGGTCCAGTCCT 16824 36 100.0 30 .................................... GCAATTATGCTTAACACGGTTAAATTGCGC 16758 36 100.0 30 .................................... AAAAAATCCTTCGCAAGATGCTAGAGCTTT 16692 36 100.0 30 .................................... GGAAAGAGGATCAGAAGGACAAAAACTGTC 16626 36 100.0 30 .................................... TACTTTAATCGACCAAATCGCGCAGGTAAT 16560 36 100.0 30 .................................... CTTTCGTGGGGTTACAATCTCGCAGAATTA 16494 36 100.0 30 .................................... CGAAGCTAAGACGGTTAGGTGCGCTCATGT 16428 36 100.0 30 .................................... TGGCACGATGTCACATATCACACGATAGAA 16362 36 100.0 30 .................................... ATCATGTTGTATCGTTCTCCATCCGAAACC 16296 36 100.0 30 .................................... GTATAACTCGTTAACTCTTTCGTTGCAATA 16230 36 100.0 30 .................................... AATCAGTCGGAACAAACATCGTAAAAGATG 16164 36 100.0 30 .................................... CTCCTTTAGTTCCTGGAGCATAAAGGTAGG 16098 36 100.0 30 .................................... GCGCGCTTTAAAGAATACCGCCCCGACTAA 16032 36 100.0 30 .................................... CCTCCTTCGGGAAATAGTCCCTTCACCCCT 15966 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 15900 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 15834 36 100.0 30 .................................... ATGCTGGATGAATTCGTGATCACGAAAAAC 15768 36 100.0 30 .................................... AATGTAAAAGGCATCTATTTAACGACTGGG 15702 36 100.0 30 .................................... CCGCTTTTGACACGTGTCGTCCAACCATAA 15636 36 100.0 30 .................................... GGATATTCGATGAAATCCATGAGTACAAGG 15570 36 100.0 30 .................................... TGCGGATTGGCTGAATGGTCTATCATGGAT 15504 36 100.0 30 .................................... AGGCGGATTGGAATATTCCTATTATCGAGT 15438 36 100.0 30 .................................... AATTGCAGGTGGGAAAGCTGGATTGACAGC 15372 36 100.0 30 .................................... ACAAGGGACAGGGAATGGTTTTATGAGGTG 15306 36 100.0 30 .................................... CCAATCCCACAAGGTGCGCCTGCCCTCGTT 15240 36 100.0 30 .................................... TGCAAGATAATCCATATCATAATTTTTTGC 15174 36 100.0 30 .................................... GAAAAAGAAAGTGGATCCACGTGAAGCTGG 15108 36 100.0 30 .................................... GGAACTTTCGGATTGAAGGTAAACCAGCGG 15042 36 100.0 30 .................................... GAAAATAGAATATGGGTATAAACTTTTTAC 14976 36 100.0 30 .................................... AAGAAGAGAAAGAGATTGTCCTACCCAGTG 14910 36 100.0 30 .................................... TTGAGAGCATCCAGGGAGATGATCTTGAAA 14844 36 100.0 30 .................................... TCCAGCAGTGGTATTAAAACAGCGTGGACA 14778 36 100.0 30 .................................... AGAGGATCCGAAGTTCCTATTAGGAAACTG 14712 36 100.0 29 .................................... TTGGTTGCAACGATGTAAACAAAAAGAGG 14647 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 49 36 100.0 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : AACCGGCACACTATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAGTGATATGATTAATGCATCCACAATTGCGCTTGGTGATT # Right flank : ACATGGCCGCAAAACCCTTGATTCCTCCCCGTTTCAGGGGTTTTGTATTTCCAAAAAAGAAGGATTTATCCCTGGGATTTATCCGCTTTGTTTTATTTTTTATAGAAATAACTGTAAAAAAAATACCTGCAAAATAAATTGCAAGTACTCTTTAAAAGAAATCTACTTTTTTAACACCGAGTTCTTCTTCTGCTGTCGTTGTACCCAATAAAATCTCCATATTGGCAAATTGTTTCTCCGTTATTTTCATTGCTCGGATGGCCCCATTAACAGGGGGGAGATTCTCCTGCAATCTCTTCATATGTTTACGGACCGCATCCTCCCCATTGCAAATTCTTGTGTATACTGAATATTGAAGCATTGTATATCCGTCATTCAATAAAAACTTACGGAAACGAGAGTAGGCTTTTCTTTCCTTCGGAAGTACTACCGGCAAATCAAAGAAAACGATAATCCTCATGTATCTACTCATATGTATGTACGTTTAAATTGGTTAATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 6168-8668 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMC01000080.1 Siminovitchia fortis strain DE0097 NODE_80_length_8755_cov_33.190712, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 6168 32 100.0 33 ................................ TTTTAATATTTCAACCTTAGTTTCAGTATCCCC 6233 32 100.0 35 ................................ ATTTCATAGAAACTCATACCCGTTGAAGTTATACC 6300 32 100.0 35 ................................ ATGTTAGCGACTTCAGACAACCTACAACCGGTTGA 6367 32 100.0 35 ................................ ACCATCTTGATCACCTCCTCCTGTGTGCAGGAATC 6434 32 100.0 35 ................................ TTGTCTACACCGAGTTTGCCTAGCACCCAGTTAAC 6501 32 100.0 35 ................................ TCAAACTCCTGCTCCATGCCTTCCAGGTCCTTGAT 6568 32 100.0 36 ................................ ACCTTTGAACTCGTTACCTTTTCTTGAACCCTGACC 6636 32 100.0 39 ................................ TTTCTCAAGGACGATCCAATAGGCGCATCCATAATGCCA 6707 32 100.0 36 ................................ ATTAGCAATATATTTTGGCATGATTTTGCCCTCCTT 6775 32 100.0 35 ................................ TACTACTGTCATAACCGCGCCGAACCCCGAAATAA 6842 32 100.0 36 ................................ CTCGTCAGTAAAACGTATTGCGAATACAACTTTATC 6910 32 100.0 34 ................................ ACAAAAATTCACGCAGATCTTATGGAGTACAGCC 6976 32 100.0 34 ................................ AAAATATTGACGAGATGCTTACTTCGAACGGACT 7042 32 100.0 35 ................................ ACCGACACGCTCGCGAAAATTTGGCAGACGGTACG 7109 32 100.0 34 ................................ CTCGCCGAGTGGTCGGTGCCGAAAGTAACCTATC 7175 32 100.0 34 ................................ TTCTAATTCGATAGTAGAGCCGATGGGGTTACGA 7241 32 100.0 35 ................................ AACTCGGCAATCGGGAAGGCAATAAGCCTCCGCAG 7308 32 100.0 34 ................................ TTCGTAATCCCCGTCGTGGAATTTATCGATTGCT 7374 32 100.0 33 ................................ CGTTACATATCGGCGCGAGCTTTCATTCCAAGC 7439 32 100.0 35 ................................ TATCCTTGAAATCTACGAGCCCTACAGAAATATGT 7506 32 100.0 34 ................................ CAAGAAGACGGTGATCCTGTACTTAAGTTTTTAC 7572 32 100.0 34 ................................ ATACTTGAGTTTTCATTGATGGACTTAAGGTAGT 7638 32 100.0 36 ................................ TATACGAGATTGGGCGTGATTTTCGAGAGTGGTTAG 7706 32 100.0 35 ................................ AAGGATGAAATCTACAACTAGAAAGGGGTAAAAGC 7773 32 100.0 36 ................................ CTGGTGTAGTGTAATTTCGAAAAACAGCCCTACCAT 7841 32 100.0 35 ................................ TTTGATTTTCTTGTTGTCATCTTGCAGTTGCTGAA 7908 32 100.0 34 ................................ TCTGACGTAGAGCCCCACCGTCATAAGCCAAACC 7974 32 100.0 36 ................................ CAAACGTTACTATTTCGTCGCCCCACAACACGTCCT 8042 32 100.0 34 ................................ CTTCCGGCTCATATTCGTAAACCGCTCCGATAAG 8108 32 100.0 33 ................................ GCTAATCCTTCGCCAGTCCAGCGTCCGATTTGA 8173 32 100.0 34 ................................ GTTAGAACACTCAATCTATTCAGCCCTTTTAATT 8239 32 100.0 34 ................................ AACCATCATTATTTGGTTAAAGAACTCACTCCCG 8305 32 100.0 34 ................................ TTCGGAAAACTGGAACAACGCCAGTCCGTCGGTT 8371 32 100.0 35 ................................ AATTTCGATGCGTCGAGGCTTTCAAACGGAATCAT 8438 32 100.0 35 ................................ CTTTTCGACATCTACCAAAGAGTCCTCAACTTCGA 8505 32 100.0 34 ................................ ATAGCGCCGTGTATTGCGTGTGACTTCGCGCTTG 8571 32 100.0 34 ................................ ACGTACCGATAATTTAAGTCCTCTGTTAGCTTTT 8637 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TGAATATCCACCATTTTTTTGGAAGTAGGTGAAAGAGTGCTTGTGTTAATAACATATGACGTCAGTACCACTACTCCGGAAGGTAGAAAAAGACTTAGGAAAGTCTCCAAGAAGTGTTTAGATTATGGACAAAGGGTTCAGAATTCCGTATTTGAATGTGTTTTGGATTCTACGCAACTTAAACAATTGAAATATCAATTAGAGGAAATTATTGATAAAGAAACCGATAGCTTAAGATTTTATAACTTGGGGAAAAACTATAAAGGCAAGGTAGATCATATAGGAGCGAAGGAATCTTACGATATAGAAGGAACACTTATTATTTAATTATGGTGCGAATATACAGCTCTCATACTTTTTCGTGGGGATTCGCACCCGAAATATCTTGGATTTGATAACGAATTTCCAGATAACTTCAAATGTATTCCTTTTTATGGGAATAAATAGCGAGTTTATGTGATTATTACCCTTTTTTTGGATAAAAACTCACTGATTTCGCT # Right flank : TCGACAGTCGTGTAAAGAATCACTTTGTTCCGTCAAAAACAGGCCTTCTTTATTCAAATTCCTTCAGCGTGATTTCTGTACTTCCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 903-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMC01000130.1 Siminovitchia fortis strain DE0097 NODE_130_length_1019_cov_29.704883, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 902 36 100.0 30 .................................... AGCACGTTACAACAGACTTCAAAAAGTTTT 836 36 100.0 30 .................................... CTGCTATTTCATCATCGGTAACGCGCTTTT 770 36 100.0 30 .................................... AGTCATTAGTACGCAAATATACGGTAAAAG 704 36 100.0 30 .................................... CGGATTCGCTTCTCCTACGATGTTCTTAGA 638 36 100.0 30 .................................... CTTTCACCTTCCAAACCTACATTAGTAGAC 572 36 100.0 30 .................................... CAGCGGTTAAACTGCCCCTTTATAAATGCT 506 36 100.0 30 .................................... TGCAGGTTTTTAGCGGCCTTTTCACTGGCG 440 36 100.0 30 .................................... CATCTTGCCCCAGAACATCAGTTGCACATA 374 36 100.0 30 .................................... GCGACTTGAATCCGGTCGTTACGGTAGACC 308 36 100.0 30 .................................... GTGATTACCTCGTTGGATAAGCGCATTATA 242 36 100.0 30 .................................... TGATACTGTGTTAGGTGAGGTGGCTGTCGT 176 36 100.0 30 .................................... ACTGACTTTGTTGGGGTAGTTAATAAGACT 110 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : AGGGAAGTACAGAAATCACGCTGAAGGAATTTGAATAAAGAAGGCCCTTTTTTGACGGAACAAAGTGATTCTTTACAGTGATATGATAACGAAGGTAACATTTCAACAGTGACGCA # Right flank : TAAAGAATCACTTTGTTCCGTCAAAAATAGGCCTTCTTTATTCAAATTCCTCCGGCGTGATTTCTGTACTTCCCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 89858-88489 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMC01000011.1 Siminovitchia fortis strain DE0097 NODE_11_length_89965_cov_33.492012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 89857 32 100.0 34 ................................ CGACAGCTTCCGTAACGATTACCGTGTTTTTGAG 89791 32 100.0 33 ................................ TCGACTTGGAGGCGGCGGCTGGCTTCGAATCAA 89726 32 100.0 34 ................................ ACCTGTGACGGTGTTACGCAAGACTTCGATTTGC 89660 32 100.0 36 ................................ TTCCTTCGTTTCTTCCGTTTTTAACGACTCGTCAGT 89592 32 100.0 33 ................................ TACTCGAGCTACTAACGCATTCCACTGTGCTTC 89527 32 100.0 35 ................................ TGCTTGCCGTAGCCTATTCCGTATTTCGACTGCGT 89460 32 100.0 35 ................................ GTCTCGCAAAAGATATATCCGGAAACAAATATGGC 89393 32 100.0 36 ................................ GCTCTACCTATCGACGACCCGAAGAACGCGCATTGT 89325 32 100.0 35 ................................ CGTCTCATACACATAGTGTCAGCATCCCGTCGCAC 89258 32 100.0 35 ................................ TCCGGAAATGCTAACGTATATTCGGACGAGCACCT 89191 32 100.0 34 ................................ CCTCCAGTTCAATGTATTTGATTATGGTCATGCT 89125 32 100.0 34 ................................ AGAAAAATCCCGTTGACCGTATCTTTCGATTGCG 89059 32 100.0 35 ................................ CAGTTCTTCGGCTCCCACTTCATCGAGAATAACCC 88992 32 100.0 35 ................................ ATGATAATTACATCTTGGCTGGCGGCTCAATAGCA 88925 32 100.0 35 ................................ CCAATGGCGGCGGATGAGGTGATCATGGGAATCGG 88858 32 100.0 36 ................................ TTCAATCGACAGGTGCATGTCTTTCCACAGTTTCAT 88790 32 100.0 35 ................................ ACGGAAATCCTGCTTTGCTTTTTCACTCAAATCCC 88723 32 100.0 38 ................................ CAGAATATGAAAAGGCTACTAGAAAAATTTGGGTAATC 88653 32 93.8 35 ..........A......A.............. ATCTGAACGTAGTGGGATATAAAGGCGTGTTTGAC 88586 32 87.5 34 ..........C.A......T.......A.... GGTGTAAAGCCGGAGGTCATCGACGGTGCTTTTT 88520 32 75.0 0 .A....................TA...TTTTA | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 97.9 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : CAAACCGGCACACTATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAACAGTCGGTCCGTACACAAAGTTTCCTAGC # Right flank : ATCAGTTTTTTTCTAAAATGAATCTTTTCCTCCCCTCACCCAGTATATATGTTTAGAATAATTTTTAAGGGGTGGCTGTAATGGGTATTTTATCAAGGTTTAAAGATATTATGTCGAGCAATATCAATGCATTATTGGACAAGGCGGAGAATCCGGAGAAAATGATCGATCAGTATATGAGAAACCTGAACAGTGATTTGGGCAAGGTGAAAGCTGAAACTGCTTCGGTTATGGCGGAGGAACAGCGGTCAAAACGGGCGCTCAATGAATGTTCGACAGAGATTGAAAAGATGCAGAATTACGCGGTCAAAGCCTTGGAAGCAGGAAATGATGATGATGCACGGAAGTTTTTAGAGAAGAAGGCCTCCCTGGCCGAAAAAGAAGCGGAATTGCAGCAGGCCTATAGTTTGGCAGCTTCCAATGCGGTCCGGATGAGGGAGATGCATGACAAGCTTGTTTCTGATATCGGCGAGCTGGAGGCACGCAGAACGATGATCAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 118-616 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMC01000144.1 Siminovitchia fortis strain DE0097 NODE_144_length_689_cov_27.846405, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 118 36 100.0 30 .................................... GAAAAGTTATATGAGGAATTTAAAAAAGAG 184 36 100.0 30 .................................... CATGCTTTGCGGGATTGATGCGGCAACGCT 250 36 100.0 30 .................................... TCTGCAAAGTCTTGGACAGCCGCCTGCAGC 316 36 100.0 31 .................................... CCAACGCGGACAAGCGCCTTTTTAAGTTCAG 383 36 100.0 30 .................................... GGGCACTCCTGCTATCTCCTACTCTCATTA 449 36 100.0 30 .................................... TCGGGGATCCGGATGCTCTTTTAAAATATG 515 36 100.0 30 .................................... GTTTAAAGGGAAGATAGTTACATCTGTCCC 581 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.3 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTTAGTACCCAGATTTGTAAATTGTTCCCAAAAGAGCGCTGAATTAGTTTTCGGCAAATTTACTTTCGTAATTTGGGGTGATATGATAATGCTCACGAGTAGAACCTTTTTCTCCACG # Right flank : AAACTAGCACATTATTTCAGACACCTAATTTCAAATTAACTCCGGTGAAAAACCTGAAATAGTGTGCCGGTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //