Array 1 928-167 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVB01000012.1 Bifidobacterium pseudolongum subsp. globosum strain 1791B Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 927 29 100.0 32 ............................. TTCCCACAATTGAGTGACGATATTAAGAATGT 866 29 100.0 32 ............................. GGAAACAGAGTGCAATGGTATGTAGAAAAGTT 805 29 100.0 32 ............................. CAGGCCGCCACATCGACACAGACCATCGAAGG 744 29 96.6 32 ............................C GTGTTGAAAAACTCGTCGCGCAATACGGGGTA 683 29 100.0 32 ............................. TATGTGCCCTGAGTTGCTTTCATAATAAGCGC 622 29 93.1 32 ..........................T.C CTGGGGCATATCGACGTGGTGCTGCCGGTGGC 561 29 100.0 32 ............................. TTGGCCTTCCAGCCGTTGGACCTCATCGAGAA 500 29 100.0 32 ............................. CGTCGTAGACGCCTTCTCGTATGAGTTTCGCG 439 29 100.0 32 ............................. GAGGCCGGCGACACGATCAACGACGCGATCCT 378 29 100.0 32 ............................. AACATGCTCTACGGCACCTACCTCGACCCGTA 317 29 100.0 32 ............................. GACAAGATCGCCGGATTCTGCGGTGGAGTCCT 256 29 100.0 32 ............................. CACGGCGCGTACATGACGCCGGACACGATCCG 195 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : CCCGATATCGGGGTTTGCCCCGCATGCGCGGGGATGATCCTCCCCTCAGTGATCCGGGGACGTTGAGGAATTTGTTTGCCCCGCATGCGCGGGGATGATCCGGCCACAATCCCCTGTCTATACGGCGCATGGCCGTTTGCCCCGCATGCGCGGGGATGATCCGTGGTCGCGGATGCGTTTTTCGGCGTCCTTGGTGTTTGCCCCGCATGCGCGGGGATGATCCGGCTCCAACAGTTTTCGCAAGTTTTTGAGCTTGAGAGCGTCAGCTAGCCGCGCCGCTTGTCCTAGAGTCATGTTCGATACGGGGCGAACGCCCCGCTCGTACTCACTCAGGCGCTGGCGAGATAACCCCGCCGCGTCCGCGACTTGCTGCTGTGTCAAGCCCTTTGCTTGTCTTAATTCCAGTAGATTCATAGCGTCCCTCCCGGTACACTAATGATTCTACGGGATTGCCCGCACACCTTTTTCGACTGGCGGCGCTGCATGATTGCAGCGAGCTT # Right flank : GATCTTCGACGGGCTGCCGATGCCGAGCACGCCGTTTGCCGGCTCTTCCCTTTTGAGTGTGTAAGGGCCGTGCTCCATCATTTGTTGTGTGAATGATAAAAAGAATGGGGCACGGCCTGTCCCCGATTTTAGCGTGTTCGATGGTCAGTGCCTGTTGGGGTTGGACC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2697-1204 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVB01000012.1 Bifidobacterium pseudolongum subsp. globosum strain 1791B Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2696 29 100.0 32 ............................. ACGTGGTTCTCGCTTCAGGTCACCAAGAAGGC 2635 29 100.0 32 ............................. CGGATCTCCTGTTGTCCGTTGGCTCGGCGGAT 2574 29 100.0 32 ............................. ACCCGCCCGGAACCGCCGGCCGGCAAACCCGA 2513 29 96.6 32 ............................C ACGCGCTCCTCGCCGTCGGGGGCGTCGGCGCC 2452 29 96.6 32 ............................A GGTCGGCTTCACCGACGAGCAGATCACACGTC 2391 29 100.0 32 ............................. CTGGGGCTGCCATGGAGAACAGGCTGTCGATG 2330 29 100.0 32 ............................. CATCGAAGCGGAATACTGCATCGACCGTCCGA 2269 29 100.0 32 ............................. AAATGCCCCTTGCCGGGGATCTCCAGAAAGCG 2208 29 100.0 32 ............................. GGGCGTGAGGAACGCGACAGGGCGTGGTGCGC 2147 29 100.0 32 ............................. GCGTGCGATGGTCTGTGCGCTGGTGGGGCTGA 2086 29 100.0 32 ............................. AACGCGGACGGCTCCCTGCTGCCACCGACGAA 2025 29 100.0 32 ............................. ATCGCCACCATCGTCGTGGCCAAACTCAAGGA 1964 29 100.0 32 ............................. GAGAGCGCGCAGTGAGCCAGCAGAAACACGCC 1903 29 100.0 32 ............................. GAGGCAAAACCAATGGTAGGAATTATAGGCAG 1842 29 100.0 32 ............................. CAGCCAAAAGACGCCATATTATAATCTCTCGC 1781 29 96.6 32 .....................G....... CGTACAATGTCCCTGTATCCCATGTCCCACGT 1720 29 100.0 32 ............................. GGGCGGCATGGAACCGCTTAGCGTGGACTGGT 1659 29 100.0 32 ............................. TAGGCCCATGGGAACTGTGAACGCGTCTTGAT 1598 29 100.0 32 ............................. GTATGGCGAAAGAACAGACTTACATAATGCAA 1537 29 100.0 32 ............................. GTATGGCGAAAGAACAGACTTACATAATGCAA 1476 29 100.0 32 ............................. ATGTCGAAGTCGTCCGTAAGCCCGATATCGGG 1415 29 96.6 32 ............................T CCCCTCAGTGATCCGGGGACGTTGAGGAATTT 1354 29 100.0 32 ............................. GCCACAATCCCCTGTCTATACGGCGCATGGCC 1293 29 100.0 32 ............................. TGGTCGCGGATGCGTTTTTCGGCGTCCTTGGT 1232 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.5 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GCGGGGATGATCCGCGCAGTACGCCATCGATCACCTCAACGACTGAGTTTGCCCCGCATGCGCGGGGATGATCCGACCCGGACGACGAGGTGATGGAACCATGAGCGGTTTGCCCCGCATGCGCGGGGATGATCCGTATCTATCCGAAGGAGGTTGGATACTATGATCGAAGAAAAAACTCCTGATGATGTGTTGCTTGACAAGTTTGTTCAGGTCTTCTCAGATGCACGAGCCTACAAAGAGGCCGACATGCTGCAAAGCATGCAGGTTGCAGGGGAATTCGCATGCGGCTTCGATTTCGCGATGGTGGCATTCAAAGACCTTGGCATCAGCCCCCCAGTGGATTTGGTGCATGCCATGATGGATTCCGTTTGGTTCGAGAAAGACTCATATGCCGATGATATCGGACATGAATTCCTGAAGAAGTCCGAGGCCTCGGATGCGTCGTGATATGGATCTGATTCGGCGTATCCTCATCATGGTGGGTGATTCGCCGGTAC # Right flank : GCTCCAACAGTTTTCGCAAGTTTTTGAGCTTGAGAGCGTCAGCTAGCCGCGCCGCTTGTCCTAGAGTCATGTTCGATACGGGGCGAACGCCCCGCTCGTACTCACTCAGGCGCTGGCGAGATAACCCCGCCGCGTCCGCGACTTGCTGCTGTGTCAAGCCCTTTGCTTGTCTTAATTCCAGTAGATTCATAGCGTCCCTCCCGGTACACTAATGATTCTACGGGATTGCCCGCACACCTTTTTCGACTGGCGGCGCTGCATGATTGCAGCGAGCTTGTTTGCCCCGCATGCGCGGGGATGATCCGTTCCCACAATTGAGTGACGATATTAAGAATGTGTTTGCCCCGCATGCGCGGGGATGATCCGGGAAACAGAGTGCAATGGTATGTAGAAAAGTTGTTTGCCCCGCATGCGCGGGGATGATCCGCAGGCCGCCACATCGACACAGACCATCGAAGGGTTTGCCCCGCATGCGCGGGGATGATCCCGTGTTGAAAAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 7420-3061 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVB01000012.1 Bifidobacterium pseudolongum subsp. globosum strain 1791B Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7419 29 100.0 32 ............................. GTATTGTTTCCATTTTCATGGTGCCACCTATT 7358 29 100.0 32 ............................. AATATTCTCAATGTAGCCAATTTCCGTGATTG 7297 29 100.0 31 ............................. AAAAAATACGGGAATGGCTCGCCGCGAACAT A [7269] 7236 29 100.0 32 ............................. ATGTGGGATAATGCTAATGCCATTATCGACGA 7175 29 100.0 32 ............................. AATATCCAGAACGTCGCCGTAGGAATCACTAA 7114 29 100.0 32 ............................. TGGAGTTCAACGTCAATAATAGGGCAAATGTG 7053 29 100.0 32 ............................. CGTGTCATTAATGGTACGAATCTGGCGAAGCA 6992 29 100.0 32 ............................. GAGGCAAAAACCATGGCAGGAACGATAGGCGG 6931 29 100.0 32 ............................. TGCAGGCCGGCAACGAAAAAACAAACGTGTTC 6870 29 100.0 32 ............................. GAATTCGGTTCGATGCTGCAGGCGGTCATGCC 6809 29 100.0 32 ............................. ATCGACCTCATGCAGGACACCACGAACCGTTT 6748 29 100.0 32 ............................. GGCCACAGCACTCACACTGTGGCCCGGTGTGT 6687 29 100.0 32 ............................. CTAGCCCCACCCGAGACGCCCGACTGGTTCCC 6626 29 100.0 32 ............................. GAGCGGACACCATGGCAGGAGGAGCAATCGTC 6565 29 100.0 32 ............................. ATTCCGACACGAATCCAACCGTGGTGAATCGC 6504 29 100.0 32 ............................. GTGAGGGTGACCGTGTCGGTTTCGTTGCCCTC 6443 29 100.0 32 ............................. TCACCGATCAGGGCGACCAGACCCTCAACCGT 6382 29 96.6 32 ............................C TATTCTTACCACTACAGATTTTTGGTTTAGGT 6321 29 100.0 32 ............................. CATACCGTCTTCGAGATTCGCGGGAATGGTAT 6260 29 100.0 32 ............................. ATCACTTGGCGGCTGTAGAAAACGCTGGATGT 6199 29 100.0 32 ............................. GAGCAATCATGGCTGACGGAAAAACCTTCACG 6138 29 100.0 32 ............................. GCGGCGGCCGCATTGCTCGCCGCTGATCCGTT 6077 29 100.0 32 ............................. ATCATACAGCCGGTTGATCTTGTCGCACGCCG 6016 29 100.0 32 ............................. GACGGCATATCGGCGTCCGACTATGGAAACCG 5955 29 100.0 32 ............................. AACTTGGTGCGTATGTTCGCGACTCCATGGCT 5894 29 100.0 32 ............................. ATACAAGAACACCCAGCCGGCTGTGCCGTACT 5833 29 100.0 32 ............................. GTCTTGCCGGAGTCGGGATCCTTGAAGAAGCC 5772 29 100.0 32 ............................. GCACATAAATGCTCATATCAACCCATCAACCC 5711 29 100.0 32 ............................. CGACAAAGCAACTGGCCCTCTCCGTACGACAA 5650 29 100.0 32 ............................. ACGCCGGCGCTGATTTTGACGGCGGTGTCCAC 5589 29 100.0 32 ............................. CAGTGTTCGGGATTCCTAGGGAACGCGTTCAC 5528 29 100.0 32 ............................. ATGCCGGCACTATGTCGGGCACGGTATGGATT 5467 29 100.0 32 ............................. AAAAAAAGACGGCATAAAAAAGAATAACACAG 5406 29 100.0 32 ............................. CGTATGGGGCGCCCTTGATGATTTCGTCCACC 5345 29 100.0 32 ............................. GACGGGGGTCTACCGTTTTTAAGCGACGCAAT 5284 29 100.0 32 ............................. GACGGGGGTCTACCGTTTTTAAGCGACGCAAT 5223 29 100.0 32 ............................. GTAGCGACGATCATCGCCGGCAGGCAATCCCG 5162 29 100.0 32 ............................. ACACCGGCAAAAGCACGGCCCATACGAGCGGT 5101 29 100.0 32 ............................. AACCACCACTCATGCTCAATAGCATAACGGGC 5040 29 100.0 32 ............................. TTCTACTTTCAGGTTAGCCCGCTACAACAGAT 4979 29 100.0 33 ............................. ATCTGCCGATGGTACCTCGAACATGATATCGAT 4917 29 100.0 32 ............................. ACTGGTTGCATGGGCTGCTGCGGGTCGTCGAG 4856 29 100.0 32 ............................. GAACGGCTAATCACCGACGAAGTGCAGGCGGG 4795 29 100.0 32 ............................. TTGTGTAATGTCACGTGGGACATGGGGTACCG 4734 29 100.0 32 ............................. TATTGAATGTGAAAACGCAAATATGGAATGAG 4673 29 100.0 32 ............................. GTGAGGGTGACCGTGTCGGTCTCGTTGCCATC 4612 29 100.0 32 ............................. TAGAGCGTCTCATACTGTGGTGCGGCCGTCAG 4551 29 100.0 32 ............................. GTGAACCACCCGCAGCATTACAAGCAGGGTCC 4490 29 100.0 32 ............................. GCACCAGCGGACTCACGTACGCGGTGAATCCG 4429 29 96.6 32 ............................A GGATTCGACCAGCCAGGCGGACACGAAAAGTA 4368 29 100.0 32 ............................. TAGGGACGAAGAAAAACCACCACTGTTTCGCA 4307 29 100.0 32 ............................. GTGTTCGGCCATCTCGAGACGAGCACGTCGAC 4246 29 100.0 32 ............................. GTGGATCCAAAAACGGGGAACATCACGGCGGA 4185 29 100.0 32 ............................. GTAAGACCAACCGGACGAAGATTCATAGGGCG 4124 29 100.0 32 ............................. TAACGGTTGAGTTGCGACTCGTTGAGCCCAGA 4063 29 100.0 32 ............................. CAAGACGAATGGATCGCGGCCCGCATCCCGGA 4002 29 100.0 32 ............................. GACGAGGGAGTCGCACGCTGATGTGGACCGCC 3941 29 100.0 32 ............................. CATGGGACACCCTGGTCAGTGCGTTCGACGTC 3880 29 100.0 32 ............................. GCAAGGCCTGCGCTTACTGCACGATGATCGCC 3819 29 100.0 32 ............................. CATTGCAAAGAATGTTGGGCCATAAGAGCGCG 3758 29 100.0 32 ............................. ACCTGGAACGGCATCGCCGGCGCTGTCGGCCT 3697 29 100.0 30 ............................. CCCCCCCGTCACAATTCCATCACCATCGAA 3638 29 100.0 32 ............................. CCGTCTATGAGGGCAATGTGATGGGCATGGCG 3577 29 100.0 32 ............................. ATGGTTCGCTAAAATCTATCCAATGTTCTTCA 3516 29 100.0 32 ............................. AATAGTACTTGTATGGCGTATTCTATAATGTT 3455 29 100.0 32 ............................. TGTATCAACATCGTCCCGCATAAGGCTATCCT 3394 29 100.0 32 ............................. AGCATCAGCTTCACGGTATGCTGTTTCACAAT 3333 29 100.0 32 ............................. ATACAGCTCATGGCCCAAAACGGGTCAATGCT 3272 29 100.0 32 ............................. CGCGGGGCGCGGTGGTATCGTCATACCCGCTG 3211 29 100.0 32 ............................. CGCAGTACGCCATCGATCACCTCAACGACTGA 3150 29 100.0 32 ............................. ACCCGGACGACGAGGTGATGGAACCATGAGCG 3089 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 72 29 99.9 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GATTGTCATCGTGCTGACGGCTGCGCCTCCCAAGATACGAGGTCATCTCACACGATGGTTGTTTGAGATATCTCCAGGTGTGTATGTGGGAAAAGTATCAGCCCGTGTTAGAGAGTTGATTTGGGAGCAAATTCTTGACAATATCCGAGATGGGCGCGCCGTAATGGTATATTCGGCGAACAATGAACAGGGACTGGAGTTCAAAACCTACGGACAGGAGTGGTCGCCTGTTGATTTTGAGGGCCTTGAGCTGATTATGAGGCCTCATGATCAAGGCGAATCCAGCGGGAAATCTCAGGGCGCATCTCGTAGAAAAGGTTGGAGCAATGCATCGCGATATCGTCGTTTTGGTAGATAGTTGTTGCTGCGATGCTAAACTGGGGATTGCGTGCCGACGTGAGGAAGTTTGGAACCATGATGACGTTAGCGAAATGTGACCGACTGTGCAAATCGAATTTTTCGAGTATTGTCGGAGTGCGTTTTGCTAATGGAATCAGACT # Right flank : TATCTATCCGAAGGAGGTTGGATACTATGATCGAAGAAAAAACTCCTGATGATGTGTTGCTTGACAAGTTTGTTCAGGTCTTCTCAGATGCACGAGCCTACAAAGAGGCCGACATGCTGCAAAGCATGCAGGTTGCAGGGGAATTCGCATGCGGCTTCGATTTCGCGATGGTGGCATTCAAAGACCTTGGCATCAGCCCCCCAGTGGATTTGGTGCATGCCATGATGGATTCCGTTTGGTTCGAGAAAGACTCATATGCCGATGATATCGGACATGAATTCCTGAAGAAGTCCGAGGCCTCGGATGCGTCGTGATATGGATCTGATTCGGCGTATCCTCATCATGGTGGGTGATTCGCCGGTACGTTTGCCCCGCATGCGCGGGGATGATCCGACGTGGTTCTCGCTTCAGGTCACCAAGAAGGCGTTTGCCCCGCATGCGCGGGGATGATCCGCGGATCTCCTGTTGTCCGTTGGCTCGGCGGATGTTTGCCCCGCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //