Array 1 1299665-1303273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRW010000001.1 Bifidobacterium sp. W8104 NODE_1_length_2076409_cov_344.803556, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1299665 32 100.0 35 ................................ GAAGCAAGCCTTAACAAGGCGGTAGAAGCCCAGAG 1299732 32 100.0 34 ................................ GTGGTCGCTACTTGTATGCCATGGGGGCGTAACA 1299798 32 100.0 34 ................................ TGTACGGTTGCTACTTCATCACTCATTTTTACCA 1299864 32 100.0 35 ................................ ACCGTCGCAAAGTCCGCCTACTCGAAACCTCCGCC 1299931 32 100.0 33 ................................ CCGTGCGGGCCGCAATTTTTATGAAATTGATCC 1299996 32 100.0 34 ................................ CTCAATCTCACGCAATGTGGTGAGCGTGTCGCGA 1300062 32 100.0 34 ................................ AAAATCTCTTGACAATCCTTGCGCTACGTTGCGT 1300128 32 100.0 34 ................................ ATCAAGCCCGACACGCAAAATCCCCTCATTGCTG 1300194 32 100.0 34 ................................ GGTGATGACCAAGGACGGCAAGACCATCCCGCCC 1300260 32 100.0 34 ................................ GCGAGTCAAGTTACTTTGATGATCGAATATTGGA 1300326 32 96.9 34 .............T.................. TCGCTGATGGTGGTCGTGTTGTAGGAGGTCTCCT 1300392 32 100.0 34 ................................ GTGCCGGCGCTGCTGCGCGTCCAGGCCCTCCATG 1300458 32 100.0 34 ................................ TGCATACCCGGAAGGAGGTGAGCCATGAGAGGAA 1300524 32 100.0 36 ................................ GGTGACGATTATGGTCATCATATGAATCTTGTATAT 1300592 32 100.0 35 ................................ GACCTGGCCATGGGGGACCGGGTCATCAAGATCAA 1300659 32 100.0 33 ................................ ACCCGCCCAATCACGCTCAGCCGGTGCTCAGGC 1300724 32 100.0 35 ................................ TTTCTGGTACGCTAGCGACTCTTTGTAGGCGTGGA 1300791 32 100.0 35 ................................ ATTGATGGACCACTCACGGGTTGTGAGTTCCATAA 1300858 32 100.0 35 ................................ CTCGACTGGGAGCCGCCAGCAAGCCATAGGGGCGA 1300925 32 100.0 35 ................................ CGCGCCCAGCTACGCAGACTCAAAGCCCAGCACGC 1300992 32 100.0 34 ................................ CACCAGCACGCCATGGGTGGGCCAGTCCACAAGC 1301058 32 96.9 35 ....G........................... CTTGGACTCTGCCGCCTTAGCGTCAGCCTGTGCCT 1301125 32 100.0 35 ................................ CTATAACATACATGGCATACAGACTCGCGTTGCTC 1301192 32 100.0 35 ................................ AATGGTGGCTCTCAGCTCATCATCGGTATCATCAC 1301259 32 100.0 35 ................................ GCGTCATGACTTTTGAGAACCTGATCCCTACAGCG 1301326 32 100.0 33 ................................ AACCAGACCCTGAACACTGCCCGCATCACCCTC 1301391 32 100.0 34 ................................ TCTTGGTATTCAGCCTTTGCACGTTCTAGCCAAT 1301457 32 90.6 32 .....C.....C.........C.......... ATAAGCCGGCACGGAAGGCGCGCCGTCTTGCC 1301521 32 96.9 36 ...........C.................... TGTGGCCGGAGCCGACTACGGGCTCTGGGTCGCCGG 1301589 32 96.9 35 ...........C.................... CGGTCCGTCACCACGACCACGCCCTTACCTGCCAG 1301656 32 96.9 33 ...........C.................... TCGCCTTGGTAGGGCCAGTCGATGGGCAGGGTC 1301721 32 93.8 33 .......T...C.................... TGCCCCATGGCGCTGAATCGCTCGCCTTTGCTC 1301786 32 96.9 33 ...........C.................... CTCGTGCCCTGATACTCCTCCAGCGTGGCCACG 1301851 32 96.9 34 ...........C.................... TCCGTGGAAAGCTGCATGTAGATCATGGGCTTGG 1301917 32 96.9 35 ...........C.................... AAACAGCGCATGCAAAGTCCTGCGGACGGTCGGAT 1301984 32 96.9 35 ...........C.................... ACGACGACCGCATATACAACCGCCAGGCTCAGCAT 1302051 32 96.9 34 ...........C.................... GAGGACGCGGAAGTGCTGGGGGCCTATCTCGGCT 1302117 32 96.9 33 ...........C.................... AGGAGGATCGTCATGGATACTCGTCTCACTCAC 1302182 32 96.9 34 ...........C.................... AAAGCGACCTTTGCCCTTGACGATCAGCTTTTGA 1302248 32 96.9 33 ...........C.................... CAATGCCGCTTCCCTCTCATTGCCCATCGTCTT 1302313 32 96.9 33 ...........C.................... GGGATGTGCCTCACCAACCAAGACCTGCACAGG 1302378 32 96.9 34 ...........C.................... GCGGGCCTCCTGTCGACGGGGACGACCGAGGCGG 1302444 32 96.9 34 ...........C.................... GAGCGATATGCCGGTAACGCTGCCCAATACTACC 1302510 32 96.9 34 ...........C.................... AAATGCCCGGTTTCAGCACCGTCAGCCAAGGAAA 1302576 32 96.9 34 ...........C.................... CGAACAGGACCGCCAAGGAAGTCATGTGCAACCA 1302642 32 96.9 36 ...........C.................... CGAAACCGCCCGTCGGCTCTTCGCCACGCACAACGT 1302710 32 96.9 35 ...........C.................... ACCTTCGCAACATAGGAGACGGTGCCGGGTACAAC 1302777 32 100.0 33 ................................ AGGGGTGATCGGCAACAATATGAGCGGTGAACG 1302842 32 100.0 34 ................................ GCCGAGGTGGGCGGCGCTGAAGCGACCCTGACAT 1302908 32 100.0 34 ................................ CGTGTCCTGAAGTGCTCTGGTACAGCGAGGCTGA 1302974 32 100.0 35 ................................ TTTGTTGTGGCATGGTGCGTTTGTTTGATTGTTTT 1303041 32 100.0 35 ................................ AGGCTCAGCTTCCGCTCGGCCTCCCTCTTCGCCTC 1303108 32 96.9 35 ...........C.................... GACGGGGACTTCGACGGCGACACCCTCGCCGTGGT 1303175 32 90.6 34 ...........C.........A........G. ATCAGGTCGGTCAAAACCTCGCCCTGTTTAAGAG 1303241 32 78.1 0 ......T.T..CT...........G.G.G... | C [1303267] ========== ====== ====== ====== ================================ ==================================== ================== 55 32 98.0 34 GTCGCTCCCTTTACGGGAGCGTGGATTGAAAT # Left flank : ATTGTGGATCATTGTTGGCGCGAAACTCTAGCAATCATGTATTCATATGATCCTTCGCGCCTAAGATTGTCGCTTCTGGATCATATTCGGTCTCAATTTCGTATGTTGTTGTTTGCTGAGTTCTTTTCAAATCTACAAGCAGACAGCTATAGATGTGAAGAAAGCTAGAATTCTAGTGAAACTGATAAACGGTTGCTTGATAACTGAATAGTGACGTTATCGTCTAGAGACAGAAGCTGAGTACCTGAATTGGTTTTTTTTTGGGGGGGGGGGGGGGGGAGGCGGCACCCCGAAAAGGCCATACAAATATTGGTGGTTGTTTGGATGATTGTTGTGTCGGGGCCAGTACTGGAGGGGNNNNNACAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGTCGCCAGCCATTAAAGGCCAATCATATATTGGTCATTGGATGTATCATTGTGCT # Right flank : TACCACTACGATGGTTCTCTACCTGCGGTAAATGCGTAGCCCCTTTCATGGAAGCCTAAATTGGAAAACTGATTGCGTTACTTTGAATTATCCAGACAGCACTGTTTTCTATCGGTAACACGTATCAAATCAGTTCTTTCACCAGAACTCCGTCATAAATTGTACTCCTACTAAGCAGGATTACGAGTTGTTGCTTCGGTATTGTGTCAGTCGTTTTTATGCCATTTGCTTGTTACTAGCCCCCGAAAGTGCCGTGCTCCCCTGCATCTGCAGGAATGGTTCTACGGGCCATCGGATGATGCCCTTCAGGAACACAAATATGAGAGGAGATGAATGGTTATGGATGAGGATTTCATGAGAAAAATGGCATCCAAGGATAAGGCCTGCACCACTCATGACCATATTCCTGATGACCGGATCTATAGTTACGCGTCATGGTATCCCATCACTGATGATATGGATGAAACCGAACGCCGTGTCTGGGATTCGCTGGATGATGA # Questionable array : NO Score: 8.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTTACGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2031904-2031692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRW010000001.1 Bifidobacterium sp. W8104 NODE_1_length_2076409_cov_344.803556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2031903 29 96.6 32 ............................T CCCTGTCGAAGGTCTCGGGGCCGTCCCAGGTA 2031842 29 100.0 32 ............................. TCATCGCCTGGCTCCAAAAAACCATGGTCGTG 2031781 29 100.0 32 ............................. ACGCATAAGCCATCACAGGTCGCAAAGCTAAC 2031720 29 93.1 0 .....A......................G | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCATCCGCGGGGATGATCCC # Left flank : CTGGTGAGATGGGTGGCCATCAGATGGGAGGTTCCGACACTGCCACGCAAATCTCACAGTGGGTGGCCAAGCACTATACCGCAACCACGGTTGACGGCGTCACTGTGTATGATCTGAGCCAGCAGCAGGCCAGCTGAGCGCAAAGAGGGCCGAACTATCCAAAAGCTACTCCCTCCGTTTGCGGTTACAGGATAAAGACGAGACGAGCTACTGACTTCTAATTTGTCGGTTGCGAGTAGTTTCCTCGTTTGCGCGTTGAAAAAGTGCAAAGCAGCTAAGAGCTAAGCAGTGAGTGGATTGGAACTATCCCAGCCCGCTCATTTCTTATTGATCAATACAGGATGGTATTTGTGTCCGATTAGAGCAAGACTAGTTATTGCAGACCAAGGCACTTCAGGTCAAACTCAATAGCGTTATTGATTTCATTACGCTGGTCTGCGTTGCATTGGTTTGCATTGCACGGTAGTAGATAATCCTTACAAATGGAAGGATTTCTAAGT # Right flank : CCTTCTGGAATGATCGTCTTCCGAAGGTGTAGTACATATCCAATATATGGACAGATATTGCCAAAGTGACAATTCTCTAGCATAATTCTCTTATGCATAAATCGTGCATTTTGTTGCGACGGCAAAGGAACCGCCATGACACATATATCTTTGAAACAAAAGCTATTTTCTGACGCGAATGGCTGGGTTCGTGTTGGCGATGCAGTTGCTGGATGCCTTTTCTGATGTCCAATAAACCAATAGATATTGCTGTCAGCTTTTTCGGACTAGCGTTAGTCCTTGCCCATATTATATCGTTTGTTACTGATTCACAGTTCTGGGCTTTATGCACTTATCCAGTGGCTTGGGTGGCGATGATTATCTTTATGGCAATAGAACGCCGAGGGAAACACGATAAAGACTAGCGTCATTTGAAGATGCTGAAATGTGTGAGTTGGGCGAACTGCCACATGTTTTATAGTTCGCCCTGTTCGCTTTTCCTTATGTGCTCTAATTCGTGG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATCCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //