Array 1 1-1965 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNBM01000232.1 Mycobacterium tuberculosis strain Bir 63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================== ================== 1 28 100.0 46 ............................ ACGGAAACTCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGT 75 28 100.0 46 ............................ ACGGAAACACGGAAACGCAGCACCAGCCTGACAATCTTATTCTCGC 149 28 100.0 0 ............................ - Deletion [177] 177 28 100.0 43 ............................ AGGGAAACACTCGGAATCCCATGTGCTGACAGCGGATTCGCAT 248 28 100.0 43 ............................ AGGAAACCGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 319 28 100.0 45 ............................ AGGGAAACGCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG 392 28 100.0 48 ............................ AGGGAAACATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 468 28 100.0 46 ............................ AGGGAAACCCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGT 542 28 100.0 48 ............................ AGGAAACCAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGGCG 618 28 96.4 1 ..G......................... G Deletion [647] 647 28 100.0 46 ............................ AGGGAAACCTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 721 28 100.0 42 ............................ AGGAAACCTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 791 28 100.0 32 ............................ ACGGAAACTTTGAATAACGCGCAGTGAATTTC Deletion [851] 851 28 92.9 32 .CG......................... ACGGAAACCTTGAATAACGCGCAGTGAATTTC A [855] Deletion [911] 912 28 92.9 44 .CG......................... ACGGAAACGCGAGGAACCGTCCCACCTGGGCCTGCCCCCAGCGG A [916] 985 28 100.0 1 ............................ G Deletion [1014] 1014 28 100.0 43 ............................ AGGGAAACACTCGGAATCCCATGTGCTGACAGCGGATTCGCAT 1085 28 100.0 42 ............................ AGGAAACGCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 1155 28 100.0 1 ............................ G Deletion [1184] 1184 28 100.0 45 ............................ AGGGAAACGCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG 1257 28 100.0 48 ............................ AGGGAAACCCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 1333 28 96.4 46 ..................A......... ACGGAAACTTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 1407 28 100.0 1 ............................ G Deletion [1436] 1436 28 100.0 44 ............................ AGGGAAACCGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 1508 28 100.0 45 ............................ AGGGAAACCACACCACGCGTCGTGCCATCAGTCAGCGTCCTCCTC 1581 28 96.4 46 ...............C............ GGAAACATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 1655 28 100.0 45 ............................ AGGGAAACGCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG 1728 28 100.0 51 ............................ AGGGAAACCCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGAA 1807 28 100.0 1 ............................ G Deletion [1836] 1836 28 100.0 45 ............................ AGGGAAACCGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 1909 28 100.0 1 ............................ G Deletion [1938] 1938 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================================== ================== 32 28 99.2 34 GTCGTCAGACCCAAAACCCCGAGAGGGG # Left flank : | # Right flank : GAGGGAAACGCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCATGTCCTCAGACCCAAAACCCCGAGAGGGGACGGAAACCACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //