Array 1 72049-70983 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASU01000021.1 Prauserella sp. YIM 121212 BA062_c21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72048 29 100.0 32 ............................. ATCCGGCCGAGGTCGAGCACGAACTCGCGGGT 71987 29 100.0 32 ............................. GTCTTCGCCTGGCCGCCGTAGTTCCAGCCGTG 71926 29 100.0 32 ............................. TCCGGAGCAGGGTTCCGTACCACCCAGTTCTC 71865 29 100.0 32 ............................. GACGGACCCTCCAACACCACCAGATCCGCGGG 71804 29 100.0 32 ............................. GAAAGTGCCACCAGCGCCATCAGCGACGATGT 71743 29 100.0 32 ............................. GCGTGACAGGCGACGAGCAGGACGCGTTCAGC 71682 29 100.0 32 ............................. GCTCGCGAAGACGATCAGCAGCCGTCAGCATG 71621 29 100.0 32 ............................. GACCCATACCCAGTGGGCAGAACACCGCCCTC 71560 29 100.0 32 ............................. AGCGCAGCGGACGGTGATGCTGTGGGCAAGGG 71499 29 100.0 32 ............................. GCCACACAGGCCGACGGCCAGTGGGCGTGGGA 71438 29 100.0 32 ............................. AACACCGAAGGAACCGACGGGTCGATCTCCAC 71377 29 100.0 32 ............................. CGGAGCCCGACCAGGATGAGCACGTAGGCGGG 71316 29 100.0 32 ............................. GAGCCGCCGGACTTCGATCCGCGCGACCTCTG 71255 29 100.0 32 ............................. GCCTTGGTGGGCAGCCCGATTGATTTGTCGTC 71194 29 100.0 32 ............................. GCCTGGAACGTTGCGACCAACGGCGGCCCGAG 71133 29 96.6 32 ........................T.... TCCAGCTCGGGCGGGATGGTGGCCTTGGCAGG 71072 29 96.6 32 ........................T.... ATGGCGTTCACGTAGTGCCAGCCCTCGGGGGC 71011 29 96.6 0 ........................T.... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTCGTCCCCGCGCCCGCGGGGCTGATCCC # Left flank : CTTCGAGAACCCGGACGTCGTCATGCTCTGGGACACCAATGGACGGACCGTCGCGGCGGGTACCTCGTACGGCGATTACGGGGAGTTCGACGACTTCGACGATGATGGGGCGGGTCCATGACCGTCATCGTCGTCGCCGCATGTCCCGTCGGACTTCGCGGTCACCTCACCCGCTGGCTCCTGGAAATATCGCCCGGCGTGTTCGTTGGAAAGATCAACAAACGAGTGCGTACGCTTGCTTGGCAACGAGTTACCGAGATGGTCAAGACCGGGCGGGCGATCATGGTGTACTCCGCCAACAACGAGCAAGGCCTCGCCTTCGAAGTTCACGCCCACGACTGGGTGCCCATCGACTTCGAAGGAATCCGACTCATGCTCCGCCCCACCAAACCCACCCGACAGCCGAGAACCGGATGGAGCACAGCAAGTCGACGCCGCCGCAACCGCCAGAAGTGAACGAAAACCGCAACCGACCGTCGTAAAACCGCACGTCAACAAGT # Right flank : AACGTCGTGGGTCGTACTCTCCGAGTCCGATCGGGATGGAACTCAACCAGAAGCTGCGCCTGTTCGAATACGGCAGTGTGCTGACCATCGTGCTCGTCGTGCTCGTTGTCGTCGTCGTGCTTGACCGGGCCAGCGCACATCTGAGGAAGAGGCTCGTATGACCCTGACCTGTGACGACAATGTGCTCCCGAACGTCCGCGACCTCGGCGGCCTCCCCGCGGGTCCGGGCAGGCGCACCGCCGCCGGGGTGCTGTACCGCAGCGCCGCTCCGCTGGCGGGGGACCTGCCGCCGCGGGCGTTGCCGTCGTGGCCGGCGCGCACCGTGCTGGACCTGCGTGCGCCCGGCGAACTCGACGCACCGCACCCGCTGGCCGTCGCCGGGACCACCGTGCACGCTCTGCCGTTCCTCGACGACGCCCAGCTCAGCGCGCTACCGCGCGACGACCTCGGGGCGATCTACCGGGTGTTCGTCCAGCAGGCCGCGCCGCAGCTGGCCAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGCTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCCGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81309-84387 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASU01000021.1 Prauserella sp. YIM 121212 BA062_c21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 81309 28 100.0 33 ............................ CGCCTGATCAGTCACGGGAAGACTCCTCGGTAA 81370 28 100.0 33 ............................ CCCATCGCACCGGAGATCGGACAGGAGCGAGAA 81431 28 100.0 33 ............................ CGTCGTCACCACTTGGGCCAGGCTCATCGTCGA 81492 28 100.0 33 ............................ CTCGCCGACCTCCTCCGTGAGAATGGCAAGCCA 81553 28 100.0 33 ............................ CTCCGGCACGCGGTCCTCGTCGACCGTGCCGAG 81614 28 100.0 33 ............................ GCCCTCCAAGAGCTCGGCGTCAATGCCGAGCGC 81675 28 100.0 33 ............................ CGGTCACAGGACCCGCGGTCAAACCGAGGATCG 81736 28 100.0 33 ............................ CCGGCACGGCACGTTCCGCACACCTGGGTGGAA 81797 28 100.0 33 ............................ CTTCGGCGACGACAACTCGTCCGGGTTCATGTT 81858 28 100.0 33 ............................ CCCGGGGGTTCAGGCGGTCACGCAGGTCAACGG 81919 28 100.0 33 ............................ CGAAGGAGCTCCTCATCGACCTCGGCTGGACAC 81980 28 100.0 33 ............................ CGCAACTCCGCCGAGCAAGTCGACTGCCCCGCC 82041 28 100.0 33 ............................ CTGCCCACCCGGCAGCGTGCTGCGTAACACTGG 82102 28 100.0 33 ............................ CGGTCCCCAGATCAAACCCAGGGACAACAGGCC 82163 28 100.0 34 ............................ CCTGACCGTCGACCAGCGGGCCCGTGTTGCGGTA 82225 28 100.0 33 ............................ CGGCGCCTCAAACTCCTCAGTGACTGAGTACGT 82286 28 100.0 33 ............................ CGGGGCGGCGGCCTCCAGCGCGTGCTGGTAGAC 82347 28 100.0 33 ............................ CTCCCCAACCCGACCATGACGATTCTTCGCGAA 82408 28 100.0 33 ............................ CTTCGTCAGCAGGAACGACCCCAGGGCGCCGAC 82469 28 100.0 33 ............................ CTGAGCCCACGACCTGCGGCCCGAGAAGAACTC 82530 28 100.0 33 ............................ CGTGACGTTGTCGCGGCGCATCATTCGGGCCGT 82591 28 100.0 33 ............................ CAGCCAAGCTCGACAGGGAGACGGAAGAGATCA 82652 28 100.0 33 ............................ CTTCTCCGCTGCTTCGAAGACCGGTGAGTCGGG 82713 28 100.0 33 ............................ CGCAACAAGGCTCTTGACGAGGCCGATCGTCTT 82774 28 100.0 33 ............................ GTTTTCCCATGCAACGCCACATCAACGAACCAT 82835 28 100.0 33 ............................ CTCCGTGGACTTCGGCATCCACTTCGACAGCTG 82896 28 100.0 33 ............................ GTCCAGTCGATCCGTCCCCGCGCGACCCCGTCG 82957 28 100.0 33 ............................ CATCCCGGTCAGCGAAAGACCCGCCGCTAGGCC 83018 28 100.0 33 ............................ CAGGTGCGATCCGGCGACGAACTCCGCGGTGAA 83079 28 100.0 33 ............................ CGCCCGTGTCGATCGACGCTGACACCATCTGGT 83140 28 100.0 33 ............................ CTCGCCAGCGGCCACCCGCTTGGCCAGCTCGTC 83201 28 100.0 33 ............................ CGAAAAGCACTGCGATCAGGGCCACGTAGGAAA 83262 28 100.0 33 ............................ CACCCGCAGCGACCGGCCCGTGGGTGACACGTA 83323 28 100.0 33 ............................ CGCGCCGAGGATCTTCGACGCCCGCGCACCGGG 83384 28 100.0 33 ............................ CTCGGGGTCTTCGAGGTCGAACAGCGAAAGGCC 83445 28 100.0 33 ............................ CTCGGGGTCTTCGAGGTCGAACAGCGAAAGGCC 83506 28 100.0 33 ............................ CACCACCACGACGGCGAGGGCGGTACGACGGAC 83567 28 100.0 33 ............................ CACCGTGCACGTCATCGGTCTTCTCCCCCCTCG 83628 28 100.0 33 ............................ CGAGAACTACACGATCCTCTGTACCGCCCTGGC 83689 28 100.0 33 ............................ CACTGGCACGCCGCTTGTCTTGTCGACCATCTC 83750 28 100.0 33 ............................ CTCTTGGCGTGGACTCGGATGGACGACGAATAC 83811 28 100.0 33 ............................ CGCCCAAAGCATCACTGTTCGGCGGTCGGTTTG 83872 28 100.0 33 ............................ CTCGATCGTGTCGCCGGCCTGTCGGCGTGCCAG 83933 28 100.0 33 ............................ CAGCTGGGCGGCGTCCTCGGCCAGGTCAGCCCG 83994 28 100.0 33 ............................ CGGACGTTCGAGAAGGACGGCCAGCGCCGATCG 84055 28 100.0 33 ............................ CTGAACTGCTAGTGCTCGGATTAGCTACGCCTA 84116 28 100.0 33 ............................ CGGTGGGTGTGACCTCACCCAGTGTGGTTTTCA 84177 28 100.0 33 ............................ CACGCGCAGCTTGTACCGGGGCAGCGCAGCCCT 84238 28 100.0 33 ............................ CGACCAGCTGACTGAGGCGCAGGTGGAGTTGCA 84299 28 100.0 33 ............................ CATATCCGGCCACCCGTCCGGCAGATTCGGGTG 84360 28 96.4 0 ...........G................ | ========== ====== ====== ====== ============================ ================================== ================== 51 28 99.9 33 GTCGTCCCCGCACCCGCGGGGCTGTTCC # Left flank : GAACGCCGGCGATTCCATCCGGTAGCTCAGACGAAATTCGAGCGATTATCTGCGGTGAGACCCATGATTGAATGAGCTTCTCGGCGACCGCCATCGCGTCGTCCAGGTGCTGGTACAGCGGGTTCCATGCGACGCAACGACCAGTATCGTCGCGCGCGGCTTTACCCCAGGCCGACAACCAGGCACGGTCATCCACTGTGCACTCCCCAGCATCCGAATGTCTACACATCGCTTGGGAGTTCACGGCCGTTACCGGGGATGCTGCGTTGCCCGGGGTGCACGAGCTGCGTGCATGCTCACGGTGTACGTGCGCGAGCCGTAACGCCTGGCACGGGCGGTCGATACCAGGCGAGTCGCGGCTGGCGTGGCGGTGGCGGTGGCCGTGCATCGGCCCGTCGCAACGGGGCCGGACTCCGGGAGGTATTCAGATCGATACGGGGCCTGCGGCCAAAGTGAATGAAAATCGCACCCATCCGCTGTAACATCGCAGGTCAGCAAGT # Right flank : CATCGTGACCACCGCGCCGACAGTGCGCGAGTCTGGTTCTGAGGTCGCCGCTTAACTGGAGTGGTACCGCGGAAAAGGCGTGTCGCCAAGGGGCCTCACACAACGTGGCTGGTCTGTTCCGTTCTTGAGAATGTGGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGCTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACACGCGGGGCTGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //