Array 1 707409-706462 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027287.1 Campylobacter fetus subsp. testudinum strain 772 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 707408 29 100.0 37 ............................. AATAAGAGGATTGTCTGAAAGATTTGGGGATGAGCTA 707342 29 100.0 36 ............................. CCTGCAGGCTTGTTTATTACACTAAGCGTAACTGCA 707277 29 100.0 37 ............................. TAAATTTTTATATACTCTTTGGGGTGATTTAAAATTA 707211 29 100.0 36 ............................. ATACGATATCAACCGGCAAAACCAATCTATTTGTTA 707146 29 100.0 37 ............................. TTCTATTTCCTTTTTCAATAATCTTGTTTTGATATCG 707080 29 100.0 37 ............................. GGTAGAAACAAAGCTACCTTATTACGTTGGATTTTAG 707014 29 100.0 37 ............................. GCTTGGCGACAAATATGAGTACGAAACAAAGGGACTG 706948 29 100.0 37 ............................. GAATTTCGGATCTAAAACACCAATAGCTCCTCCAAAG 706882 29 96.6 36 .............C............... CTAAAAAATGAAAGTGAATACCAAACATTCGCATTG 706817 29 96.6 36 .............C............... CTCTTTTTTTAATACGACTAGCTATCAAGTCAGCTG 706752 29 96.6 36 .............C............... CTTATACGAGAAGAATAATACTCTCTTTCTTCCCAG 706687 29 96.6 37 .............C............... CCCGGATGAGTTAGACGCCCTAGCTATGCTTTTTTAG 706621 29 96.6 36 .............C............... TATCTAACCTCCTTTTGTTTTTCTTGCCTCATATTG 706556 29 96.6 37 .............C............... CGTTTTTATCTGTATGCCCGGTGTATTGCATAAGTTG 706490 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ===================================== ================== 15 29 98.4 37 TTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTATTTAGAAGTGGTAGAATAGGCGTTCGACAAG # Right flank : CATAATAAACTCATCATCTAATTAAATTTAAAAAGAAATTTAATTAGAAATTGAAATAAGAAATAAATTTAAAAACTATTTAAAACTATTGAAAATGGATTATTTGTTTTATATATAATATAGCTATAAATAATAAAAATAAATTTATTTTCCAATCTAAATTTAAAAAATAACAATAATAAGTTAAATATCATAAAAAACATTAAATTTAAACTATTTATCTATGTTTTTTAAAAGTTTAACTAAAATTAGGTTGGAAAAAGCTTAATGTAATATAAAATATAAATTTGTGATTGTTGGTGTGTAAATAGTTTTATTAATATGAACTTGAATTTTAATTATTTAAATTTAAAATTTGATTATTTGAACTTAAATTTGAACTTGAATTAAAACTCAAATTTAAATTATTCAAATTTGAGTTTAAACTTGAATTTTGATTATCTAAATTTAATAATTTAAATTTAAATTATTTGAACTTAAATTTAATTATTTAAATTTAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : TTTCAACACAAATCTTGTCATTAGCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 712179-715891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027287.1 Campylobacter fetus subsp. testudinum strain 772 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 712179 30 96.7 36 ...............G.............. GTATTCTCCAAAATAATATAAGTCCGAGCATTCTCC 712245 30 96.7 36 ...............G.............. TAAAAAAGCATAGCTAGGGCGTCTAACTCATCCGGG 712311 30 96.7 35 ...............G.............. TGGGAAGAAAGAGAGTATTATTCTTCTCGTATAAG 712376 30 96.7 35 ...............G.............. AGCTGACTTGATAGCTAGTCGTATTAAAAAAAGAG 712441 30 96.7 34 ...............G.............. TAGATTGATATTTGACGGGAAAAATCTAAGCACA 712505 30 96.7 35 ...............G.............. TCTATCATTTTAAATTTCCTTTTTTTCTTTATTCT 712570 30 96.7 36 ...............G.............. TAATATCGGCTGGGTTTATAATAGCCCCATTGCAAC 712636 30 96.7 35 ...............G.............. TAGCCTCGTAAAATAGCCTATCGCTCGCTTTTCTG 712701 30 96.7 36 ...............G.............. AGTATAGATTTAAAACAAGCAAATTTGAAATTGGAA 712767 30 96.7 35 ...............G.............. ATTTGAACTACAGGTACATTTATAACATCAAATAA 712832 30 96.7 37 ...............G.............. ACTGTCAAGCACGACTATAAAAAGAGCTTTGATATAG 712899 30 96.7 36 ...............G.............. TTTGGAGTTTTAAACAGAGATTTAGTATCTCCATAC 712965 30 100.0 36 .............................. AATTGATATATGCAAATATATCTCTATTGTAAAGCC 713031 30 100.0 35 .............................. GGTGTTGAAACGTCTATTTACTTTTTAAAGGATGA 713096 30 100.0 36 .............................. AAACACTACACCACCAATTACCCCTAATAACACTCT 713162 30 100.0 37 .............................. TTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCTT 713229 30 100.0 36 .............................. CCCCTATTAAATATAACCACCAATGAACCGTCAATG 713295 30 100.0 36 .............................. ATATCTTTTACATTTTTACCATCTGTTGCTAAAATA 713361 30 100.0 34 .............................. TTAAATGAGGCACTTGCAGTAGATAAAACTACTT 713425 30 100.0 36 .............................. GCTTTTAGCTTAGCTATCTCCACTCTATCGCTTTCT 713491 30 100.0 36 .............................. TTAAATTCTTGAACTTTGTTCGCTTGATTTATATCT 713557 30 100.0 35 .............................. TTTTTTATACTATTTATAGAAGCTTTTTGAGCATA 713622 30 100.0 36 .............................. AAGTTCATTCGAGCGATATTAGAGCTCCGCTTCCAA 713688 30 100.0 36 .............................. ACATACTGCAGAGCTTTTTCCAGGTCTTGCACACCA 713754 30 100.0 36 .............................. AGGCTATGCGTAAAAACTTCTACTGGGTAAAAAATG 713820 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 713886 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 713952 30 100.0 36 .............................. CGTTCAGCTTCCATTGACAAACCACCTTTTAAAATA 714018 30 100.0 36 .............................. TTTCTTGCGAGATCATTTACGTGGCATGGGCTTATA 714084 30 100.0 36 .............................. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 714150 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 714216 30 96.7 36 ...............G.............. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 714282 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 714347 30 100.0 36 .............................. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 714413 30 100.0 35 .............................. TTGTACACAGGGTATGTAAGATCTGTTGTAATCTC 714478 30 100.0 36 .............................. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 714544 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 714609 30 100.0 36 .............................. AACGAAAAAGAAGGAAGTTGGGCTGAGGGCATAAAA 714675 30 96.7 36 ...............G.............. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 714741 30 96.7 37 ...............G.............. TAGACCTATATTTCGTAAATTTATAAAAGATATGGTT 714808 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 714874 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 714940 30 100.0 36 .............................. TATTTAGGGAGAATAACATCATTTGCCGGATTTACT 715006 30 100.0 36 .............................. ACCTAAACAAGAAATTATATCTCCTAATATTCAAAA 715072 30 100.0 36 .............................. AAGTAAGGATTAATTTTGTCTGATAGTTTTGTTAAT 715138 30 100.0 36 .............................. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 715204 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 715270 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 715336 30 100.0 35 .............................. TGCTAAGGCTAAGCGTATAATGGACGCGCTAAGTG 715401 30 100.0 36 .............................. TTTAATAGTGCTCTTAAAACTGGCTTTTTATTATTT 715467 30 96.7 36 ...............G.............. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 715533 30 100.0 36 .............................. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 715599 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 715664 30 100.0 36 .............................. AACGAAAAAGAAGGAAGTTGGGCTGAGGGCATAAAA 715730 30 96.7 36 ...............G.............. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 715796 30 96.7 36 ...............G.............. CCCAAAGCTGCTACCAAAAATCCATAACCGATAGTA 715862 30 70.0 0 ..........A....AGC.CA.A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 57 30 98.1 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TCTAATTTCTCATTTAAATTTAAATAATTAAAATTCAAGTTTAAACTCAAATTTGAATAATTTAAATTTGGGTTTTAATTCAAGTTCAAATTTAAGTTCAAATAATTCAAATTTAAATTATTAAATTTAGATAATTCAAATCTAAATAATTCAAATCCAAATTTAAACTCAAAATTCATATTAATAACACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATAGATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTATATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTAAATTTATTTCTTATTTCAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATG # Right flank : TCACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGAGTGGAAAGAGTGCTTAGTAAGCAAAACTATTTTGGTGAGAATAACCACTCTAAACCATTGTACAAAAGAGTTCCTAAAAGCGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGTGACAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTATAAACATAAAGATGGTAATAAAGCTACTTTTAATTATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 726147-728223 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027287.1 Campylobacter fetus subsp. testudinum strain 772 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 726147 30 100.0 35 .............................. TATTACTAGTTATATGGCTAGTATATCTGCTTCCT 726212 30 100.0 36 .............................. TTTTTTTTACTATAGCCCAAATAGCCGCTATTACGG 726278 30 100.0 36 .............................. TAAAACAAAAACAAAGGCTAAAATGATATACACAAG 726344 30 100.0 36 .............................. ACTACAGGTACATTAGATATTTTTAAATCTAATGTT 726410 30 100.0 35 .............................. TCTGTTACAAAGCCTACTTGCTTTAAGCCCTGGCT 726475 30 100.0 35 .............................. TTAAAATACCTTGACAAGTCTAAAATTTTATACTA 726540 30 96.7 36 .............................T TTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 726606 30 100.0 37 .............................. TTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 726673 30 100.0 35 .............................. TTTTTTCTTGCTGTGCGTTTAAAGCCTCTTGCTGT 726738 30 100.0 37 .............................. TGTGGTAGCCCCCTGCTTAACCAGTTGTTCGAAAGTA 726805 30 100.0 36 .............................. AGTTTCCTACGCAGGACAAAAGAGCGCATACTCTGT 726871 30 100.0 35 .............................. GCGATTTTCTTTAATAAAATTAATCGCCTCGTCTG 726936 30 100.0 35 .............................. CAATTTTTAAAGATATTCTCCCCTAGATTTGATCC 727001 30 100.0 34 .............................. TTAAAAGATAGGAAGCAATTTACAGAGGAAAAAA 727065 30 100.0 35 .............................. ATCTCTATGGCTTTGCTTTCTTTTAATGGATCTAC 727130 30 100.0 36 .............................. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 727196 30 96.7 36 ...............G.............. ACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGGG 727262 30 96.7 36 .............................T TTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAA 727328 30 100.0 35 .............................. ATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 727393 30 100.0 38 .............................. TTGCAGACTTTCCACTCTACTTTGTCTTGTTTGCCATT 727461 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 727527 30 96.7 36 ...............G.............. AAGATTTCTATTAATAATCAAATTTTAGAGGAACAA 727593 30 100.0 36 .............................. GGCGAAGGACACTGTTGATAAAGGCATAGCTAGTGG 727659 30 100.0 36 .............................. CTTTGATGATAACTTTTTGGCTCTTTTGTGTGATAT 727725 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 727791 30 96.7 37 ...............G.............. TAAAAATTGCCGTTTGCATTCTCTTTAAAGAAATGCT 727858 30 100.0 36 .............................. ATTTCTGGGGTCATACTCTCTCCGTCTGCGATAACT 727924 30 100.0 36 .............................. TTTGTAAGCTTGTTTAACTCTGTAGATGCAAATCCA 727990 30 100.0 41 .............................. TTTGCGTTTTCGACCATGGCGATTAGTCTATCTGTATCTCG 728061 30 96.7 35 ...............G.............. TAACTTCGTCTCTTGCATATCCTGCAAAAAACATA 728126 30 90.0 38 ......................A..A...T AGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 728194 30 76.7 0 ..........C....AGC....A..A...T | ========== ====== ====== ====== ============================== ========================================= ================== 32 30 98.3 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CTAATTTCTCATTTAAATTTAAATAATTAAAATTCAAGTTTAAACTCAAATTTGAATAATTTAAATTTGGGTTTTAATTCAAGTTCAAATTTAAGTTCAAATAATTCAAATTTAAATTATTAAATTTAGATAATTCAAATCTAAATAATTCAAATCCAAATTTAAACTCAAAATTCATATTAATAACACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATAGATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTATATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTCAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATG # Right flank : TCACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAACAAATATATAAACGCCTTTAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //