Array 1 38-371 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUV01000781.1 Salmonella enterica strain BCW_6308 NODE_781_length_415_cov_2.46552, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 99 29 100.0 32 ............................. GTTACTGTATTATCTCTCGCATAGACCCGGCA 160 29 100.0 32 ............................. CCTGAGGAGATATTCACCTTCCTGCATTTCAT 221 29 100.0 32 ............................. TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 282 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 343 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : AACCGTGGGAACCGTCAAGGCCCGAGGGTGACGGCTGG # Right flank : CGCCGGTTTCGGTGGGGGCTGAATCCTGAACCGTGTTCCCCGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 56-389 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUV01000790.1 Salmonella enterica strain BCW_6308 NODE_790_length_409_cov_2.16667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56 29 100.0 32 ............................. TTGTCATGCGGCGCTGCGAGCGTGCGGCCTTT 117 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCGCACGCCCTTA 178 29 100.0 32 ............................. GGCTAGCCTACCCTTTAAGGGGTTCCACAACG 239 29 100.0 32 ............................. GCTGCCAGCACTACTACCCGCCGTCGTTCCGC 300 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 361 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGATCTCCAGCGGGGATAAACCGTTAGTCGCACCACCGGAACCTACCTGCGCCTCG # Right flank : AAAACCCTCAAATATGCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1528-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUV01000148.1 Salmonella enterica strain BCW_6308 NODE_148_length_10801_cov_3.88373, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1527 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 1466 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 1405 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 1344 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 1283 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 1222 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 1161 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 1100 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 1039 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 978 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 917 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 856 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 795 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 734 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 673 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 612 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 551 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 490 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 429 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 368 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 307 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 246 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 185 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 124 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 63 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTCGTTTGATCTCCACTCACAACGGTATTGAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 530-73 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUV01000389.1 Salmonella enterica strain BCW_6308 NODE_389_length_2928_cov_2.39706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 529 29 96.6 32 ............................T GTCCCGTACGAGATACTCCAGCGCCTGCCCGC 468 29 100.0 32 ............................. GAGTAATGGATGCCCTGCCCGGCGATTGGATT 407 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 346 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 285 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 224 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 163 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 102 29 93.1 0 A...........T................ | A [75] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 896-73 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUV01000595.1 Salmonella enterica strain BCW_6308 NODE_595_length_930_cov_3.39513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 895 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 834 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 773 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 712 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 651 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 590 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 529 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 468 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 407 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 346 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 285 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 224 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 163 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 102 29 100.0 0 ............................. | A [75] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGACAATTAGTTCCGACAGACGCCGGTATTAAA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3277-340 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUV01000025.1 Salmonella enterica strain BCW_6308 NODE_25_length_34253_cov_5.34283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3276 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 3215 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 3154 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 3093 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 3032 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 2971 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 2910 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 2849 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 2788 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 2727 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 2666 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 2605 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 2544 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 2483 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 2422 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 2361 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 2300 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 2239 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 2178 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 2117 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 2014 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 1953 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 1892 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 1831 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 1770 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 1709 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 1648 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 1587 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 1526 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 1465 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 1404 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 1343 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 1282 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 1221 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 1160 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 1099 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 1038 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 977 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 916 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 855 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 794 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 733 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 672 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 611 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 550 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 489 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 428 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 367 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 48 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //