Array 1 952813-953999 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040699.1 Salmonella enterica subsp. enterica serovar Thompson strain 7 isolate CFSAN047352 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 952813 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 952874 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 952935 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 952996 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 953057 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 953118 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 953179 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 953240 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 953301 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 953362 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 953423 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 953484 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 953545 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 953606 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 953667 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 953728 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 953789 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 953850 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 953911 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 953972 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 970170-971115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040699.1 Salmonella enterica subsp. enterica serovar Thompson strain 7 isolate CFSAN047352 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 970170 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 970231 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 970292 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 970353 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 970414 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 970475 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 970536 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 970597 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 970658 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 970719 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 970780 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 970841 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 970903 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 970964 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 971025 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 971086 29 93.1 0 A..............A............. | A [971112] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //