Array 1 952999-954185 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019196.1 Salmonella enterica subsp. enterica serovar Thompson strain ATCC BAA-1738 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 952999 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 953060 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 953121 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 953182 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 953243 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 953304 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 953365 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 953426 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 953487 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 953548 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 953609 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 953670 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 953731 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 953792 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 953853 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 953914 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 953975 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 954036 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 954097 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 954158 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 970356-972035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019196.1 Salmonella enterica subsp. enterica serovar Thompson strain ATCC BAA-1738 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 970356 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 970417 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 970478 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 970539 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 970600 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 970661 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 970722 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 970783 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 970844 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 970905 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 970966 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 971027 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 971089 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 971151 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 971212 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 971273 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 971334 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 971395 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 971456 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 971517 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 971578 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 971640 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 971701 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 971762 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 971823 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 971884 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 971945 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 972006 29 93.1 0 A..............A............. | A [972032] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //