Array 1 3849-340 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAS01000012.1 Riemerella columbipharyngis strain DSM 24015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3848 47 100.0 30 ............................................... ATCGGTCAAGCCCTGCAATGGTTTTCTGCA 3771 47 100.0 30 ............................................... ACAAACTAAAATAATATTATGTACAGAGTA 3694 47 100.0 30 ............................................... ATATATTTGATAATGGTTTTAAGCATACCA 3617 47 100.0 30 ............................................... TATCCGACCAAACAACGATATAAAAGCGGT 3540 47 100.0 30 ............................................... TAAAGATGTTTTAATTTTTCCATAATGTTT 3463 47 100.0 30 ............................................... AATCTATATTATACCAAATATCCCCATCTA 3386 47 100.0 30 ............................................... ATCCACCTTGATAATATTCATTACAGCTCT 3309 47 100.0 30 ............................................... AGCTCTATGTATATGGGTTTTTTTTACAAT 3232 47 100.0 30 ............................................... AAATCTTTGCTTGCAAATCCGTGCATATTT 3155 47 100.0 30 ............................................... AACTTGCAATTTCATCAATAGATAAGGACT 3078 47 100.0 30 ............................................... TACCTGAAGGCGATAAACAAAAAGTTTGTA 3001 47 100.0 30 ............................................... AGCTTTTGTATATCAGATATCCTCAATGAA 2924 47 100.0 30 ............................................... CTGCCATGGTAGCTCTTCGTACTGAATAAC 2847 47 100.0 30 ............................................... GGTCTTCTTGATTGGGAACACCGTACTCCG 2770 47 100.0 30 ............................................... ATATTCTTTTTTCATTCCGTACACTTTGCC 2693 47 100.0 30 ............................................... AGCGAAGTAGCTCCGAAGAAACTCCGCTCG 2616 47 100.0 30 ............................................... AGCAGTATGCTTATTTACTATCGCTTGTTT 2539 47 100.0 30 ............................................... GGCTTCCGTGCAGTAGTACGCTCCGTTTTT 2462 47 100.0 30 ............................................... GGCTTCCGTGCAGTAGTACGCTCCGTTTTT 2385 47 100.0 30 ............................................... GGCTTCCGTGCAGTAGTACGCTCCGTTTTT 2308 47 100.0 30 ............................................... GAATGGTGCCAACGCCGTGAATATGCCGTA 2231 47 100.0 30 ............................................... TGCATTATAAATAGTGATAACCTTTTCTCC 2154 47 100.0 30 ............................................... AACAGCTTCTGGATTATCGGATACTAATTT 2077 47 100.0 30 ............................................... AGCTTGATGTATATGGGTTTTTTTTACAAT 2000 47 100.0 29 ............................................... GCTACCTGCACCATTACCACCAATAAAAT 1924 47 100.0 30 ............................................... CAGGTTTATTCAAGAATCTTCCCACTGCCT 1847 47 100.0 30 ............................................... AAGACAATCCGAAAGACTTTCCCCACTTGA 1770 47 100.0 30 ............................................... CGTGCCGTTACAAAAAATGCAGGCGTAAAG 1693 47 100.0 30 ............................................... TTTAGATGCCCAAAAGGAGGGGTACACAGT 1616 47 100.0 30 ............................................... AATAATATAATAAAACAACAATACAATTAT 1539 47 100.0 29 ............................................... GCGTGGCTTTGGACGATAGACCCCACGAT 1463 47 100.0 30 ............................................... ATAATAAAATTTACCCTATCAATTCCAGCC 1386 47 100.0 30 ............................................... GGAATCTTCATTCTCTTGACCAAATAAGTA 1309 47 100.0 30 ............................................... GTAGCTTTTGTTGCTTTTTTTGTCATATAA 1232 47 100.0 30 ............................................... CTAATTTCTTTAATTTAAAACCCTCTAAAT 1155 47 100.0 30 ............................................... AATGGTGTAGTAATACCGTTCGGAAGCTGA 1078 47 100.0 30 ............................................... ATACTGGCTATTACATTTAGTATTATATCA 1001 47 100.0 30 ............................................... TTATCTTAAACAAAGGTGCATCTGGAGTGG 924 47 100.0 30 ............................................... AGATATCAGAGCTGTTGGAGGTTTCTCCGG 847 47 100.0 30 ............................................... CTGAAGCCTCGTGTTAAGCCTCATAATCTC 770 47 100.0 30 ............................................... GGGTGAGATGTCTTGAAATAAGTAGGATAA 693 47 100.0 30 ............................................... AATAATATAATAAAACAACAATACAATTAT 616 47 100.0 29 ............................................... GCGTGGCTTTGGACGATAGACCCCACGAT 540 47 100.0 30 ............................................... ATAATAAAATTTACCCTATCAATTCCAGCC 463 47 100.0 30 ............................................... CTTTGGAGGAAAGCCTTAAATCGGCAGAGA 386 47 97.9 0 ..............................................T | ========== ====== ====== ====== =============================================== ============================== ================== 46 47 100.0 30 GTTGCGAACTATCGCAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTACACCGGCGAAAAACGACAACTTGCTCTGCCTGAAATGTTATGAACTCAGACCGATTTAATGCCTACAGAGTTATGTGGATAATGGTATTATACGACTTGCCCACCGAAACCAAGACCATGCGGAAAGCCGCACAGCTGTTCAGAAAACGCTTGGAAGACGATGGTTTCGGACTGTTTCAATTTTCCGCTTACATCCGCCATTGCCCGAGCAGAGAGAATGCAGAAGTACATATCAAACGGGTAAAATCCATTCTGCCCAAATACGGAAAAGTTGCCATCATGTGCATTACCGATAAGCAGTTTGGCAACATTGAAATTTTCTTTTCGCAGCAAAAAGAAGCACCGCCACCCACCTATCAGCAGTTGGAGCTATTTTAGACTGAGCTTTTACAAGCAGAAAATCATTAGGAATAAGGCTAAGCTATTCTTGTTTCTGCTAAAAATTGTAATTCTAAAGAACGCAAAACCCGCTGAAAAATAGCGAGTTAAATTTTGAG # Right flank : TCGACATCGTTGATAAAAAGTGGGCGTGGTTTGAAAAAGCATTATATGCTACACGTTCGGTCTCCGAGCCACTAACAGTGCTATTCAATGGAAATATCATTGCAGACTATTGTTGTATCAAAAAAGCCATTGAAAGAGCGGACCATGCTGATATTATAAACATTAGAGATAAAAACGAAAAGTCTACCTGGCCAGCCAAAAACAGCGAGGAGCATATAAATAGGGTACTTTCTAAAATCTCCACTCAAGCAATACAGGGGGAATATTTTAATAATCCGGTCAGTATAGGAAAAGTCTTTAAATCACTGAAATATGCTAAATTACAAGACTTAAAAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCGCAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.5,5.55 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //