Array 1 1-1463 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIR01000130.1 Acinetobacter baumannii strain ABOB02 contig-2000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 61 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 121 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 181 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 241 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 301 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 361 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 421 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 481 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 541 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 601 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 661 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 721 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 781 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 841 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 901 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 961 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1021 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1081 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1141 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1201 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1261 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1316 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1376 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1437 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 97.7 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-749 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIR01000080.1 Acinetobacter baumannii strain ABOB02 contig-1000076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 61 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 121 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 181 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 241 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 301 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 361 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 421 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 481 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 541 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 601 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 661 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 721 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 13 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1710-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIR01000136.1 Acinetobacter baumannii strain ABOB02 contig-2000043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1709 28 100.0 32 ............................ ATCATCGTAAGCATTGAATCGCGTGCCTTCAA 1649 28 100.0 32 ............................ AATGAGAAGAAAGTGGTTGCTATCGACTTCTT 1589 28 100.0 32 ............................ AATATGCTCGAATGAATTCCTTGTAGCATTCT 1529 28 100.0 32 ............................ AAGAACTGTGCGTCTTGGCGGTGGGAAAATCA 1469 28 100.0 32 ............................ ACTCCATAATTGCAGGTGTTGAAAGCTCACCG 1409 28 100.0 32 ............................ TTCTTGATCATCGTTATGTAAAAACCATTCCA 1349 28 100.0 32 ............................ AAGAAAAGTATGAACAGCAACTTATAGAAAAA 1289 28 100.0 32 ............................ GATGACCGTACCAACTGGATTTTGATATTCAT 1229 28 100.0 32 ............................ TTGTTGTGTATATAGGTTTTGCAGCTCATCTA 1169 28 100.0 32 ............................ TATAATCGAAAAACATCCAAAAGCGGGCAAAA 1109 28 100.0 32 ............................ AAAACGACCTTGTGACTCTGTGAATTCAATCT 1049 28 100.0 32 ............................ AGTTGCAACTTTAACAACTGACGGTACTGCTG 989 28 100.0 32 ............................ ATAGTGGAAATACACGTAAGTTATTGATTTAT 929 28 100.0 32 ............................ TGTTGTTAGGGCTATTTCTGCTTTATCCGATA 869 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 809 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 749 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 689 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 629 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 569 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 509 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 449 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 389 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 329 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 269 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 209 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 149 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 89 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 29 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6800-11629 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIR01000136.1 Acinetobacter baumannii strain ABOB02 contig-2000043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6800 28 100.0 32 ............................ TTCTTCTCTCTGATTACAAGCTCCCTGGGGCA 6860 28 100.0 32 ............................ ATAAGGACGATGCAAGTGATAGTGCTCACCGA 6920 28 100.0 32 ............................ ATGCAGATAAAACAGTAAAACTCTATGAAAGC 6980 28 100.0 32 ............................ ACTGGTTAATTTTAATAATGCGGATGGATATT 7040 28 100.0 32 ............................ TCTTAATCTCTTCAATGTTCATCTTCAACCCT 7100 28 100.0 32 ............................ AAAACGTTGAACATTAGTAAGTGTTAGAACAC 7160 28 100.0 32 ............................ TTACGATGGCCAACAGAAATATTAGACATATA 7220 28 100.0 32 ............................ GATAAAGGTTGTATGCGCTCTAAAGCGTTAGT 7280 28 100.0 32 ............................ AATCCAAACAGCAAAACCGATGATACCTGCAA 7340 28 100.0 32 ............................ AGTGGGCTTATATCTCTTCTATAAAAAACGGA 7400 28 100.0 32 ............................ AATGCTGCTGTTGACGTGGCTGGTCCAGTTGC 7460 28 100.0 32 ............................ GGAGTCAGGCACACTATTAGATAGCAGTGTGC 7520 28 100.0 32 ............................ ATGATGAACCTGTCTTACCTTCAGATCCTTCT 7580 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 7640 28 100.0 32 ............................ TCAAGTGCAGATGCAGCCTAATTATTCTTCTT 7700 28 100.0 32 ............................ AAGAACGTTTGGCAGCAAAAGGAACATTACCA 7760 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 7820 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 7880 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 7940 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 8000 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 8060 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 8120 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 8180 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 8240 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 8300 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 8360 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 8420 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 8480 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 8540 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 8600 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 8660 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 8720 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 8782 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 8842 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 8902 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 8962 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 9022 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 9082 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 9142 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 9202 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 9262 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 9322 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 9382 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 9442 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 9502 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 9562 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 9622 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 9682 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 9742 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 9802 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 9862 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 9922 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 9982 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 10042 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 10102 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 10162 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 10222 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 10282 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 10342 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 10402 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 10462 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 10522 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 10582 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 10642 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 10702 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 10762 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 10822 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 10882 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 10942 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 11002 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 11062 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 11122 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 11182 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 11242 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 11302 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 11362 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 11422 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 11482 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 11542 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 11602 28 89.3 0 ....T.......AT.............. | ========== ====== ====== ====== ============================ ================================== ================== 81 28 95.9 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : | # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //