Array 1 32907-31129 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040299.1 Nostoc sp. TCL26-01 plasmid pTCL26-01_B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 32906 35 100.0 39 ................................... GCTCTCAGAGGAGAGCCTTTAATTGGAAATGAACCTAAA 32832 35 100.0 39 ................................... ACAGGTGTTACCCTCTAGGGTGGGTTTATCTCCTAAAAG 32758 35 100.0 39 ................................... TTTTGCAACTTGGTCTAAGGGAACCCCAAAAAACAGGGA 32684 35 100.0 37 ................................... TCAGAAGAACCTTTTCTACCATTTGGCTGAGGGAGCA 32612 35 100.0 38 ................................... ATGTGATCTCCTTGTGAATATGTCATAAAAGCACCTCG 32539 35 100.0 37 ................................... AGACCGCCTCTTCGATAATCAACATTAGGCTGTAGAC 32467 35 100.0 35 ................................... GGCAATTGCTGCCGCAATTATTAATCCAAACATTT 32397 35 100.0 37 ................................... TTTAGATCTTCAGCAATTCCAATCATGTTTTGTACAA 32325 35 100.0 36 ................................... AACCCAGCAGGAACAGACAAGGTAGCAGTGCCTGTG 32254 35 100.0 36 ................................... TTTTTACAAGGATCCTCGGTGAACTCGCCGCAGAAG 32183 35 100.0 37 ................................... CATCACGGCGGTCGTTAATGCCAAGAGTAGCATTGCA 32111 35 100.0 38 ................................... TGCGCTGCATCGTAATCGCGGTATAATCCGCAATTTTT 32038 35 100.0 40 ................................... GCCCAGTTCATTGCTACGTGCAGTGTTGGTATATCAAACC 31963 35 100.0 37 ................................... TCCTCCACGCGAGATAATTTTAAATCTCGACTACCAT 31891 35 100.0 36 ................................... CCGCCGGCTATCCCGGCAGTAGCGGAAAAAAGTAAA 31820 35 100.0 35 ................................... CCCCAAGAACCCTCCAAACGATTTTTTAGAGAAAT 31750 35 100.0 37 ................................... GCAGCTGCAACTGGGGCTGCGCCCGTAACCAGCAAAA 31678 35 100.0 39 ................................... CTCCCACCAAAAGGGTCACCCCGGTAACCATTGTGGCAG 31604 35 100.0 38 ................................... AGCTTGATCTTCTTTTCGTTGCACCGCAGCGGCAACGA 31531 35 100.0 39 ................................... TTGTTTTTAGTGCGCTATTTGCAACTTTAAGTAAAAAAT 31457 35 100.0 40 ................................... TACACTGCATTCTGGAAAAAAATAGACGCTAATCCAACAA 31382 35 100.0 39 ................................... CTCCCACCACAAGGATCGCTCCGGCGACCATTGTGAGAG 31308 35 100.0 35 ................................... TATAGCGCCATCGATACCGACCGCAGCGGCCCCGA 31238 35 100.0 40 ................................... AGGGTTGTTGGCAAAGTACCCTTCCAACTGAGCGGTTAAT 31163 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 25 35 100.0 38 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : CTTTGGTTGTTGATTCTCTGGTAATATATTTGACTAACAAAAACATTTTTACCATAGAGGATTTTACCTCTCCTGATGAACGTGGTGGTGTTTATTTTCAACCTCATGCACTCAAAAAATTTCTCAAACACTGGGAGGAAAGATTACAAACAGAAATTACACATCCACACACAGACTGTAAAGTACCTTACCGTCGTTGTATTGAGTTACAGGTACGGGAGTATATTGCTTGTTTGATGGGTGAAGTTGAAGTGTATCGCCCAATGATTTGGAAATTATAATACTTTAGTAATTGCCTGATAGTGGTTTTTGGGGCAAAAGTAAAATCGCTGAAACCCTGATTGTTTCGTAGAATGCCCCAAATTACCTTCCTATTATGGGTTAGAGCTTGGTCAATATCCATCTTATTAAGAAAGTATCTCATTTATTAGGCATAAATTTGACAACCCCCAAAAAACTGCTGTAGAATCGCCTCTAGGTAAAGCTTTCACGAGCTAGCC # Right flank : CTAGTTGCTTCAAAGCTGTGAGAATTTCATTCGAGTTGAGTTTATCAACAACTTGAGAAAAATAAAAAATATCCCCGATTTCTTCAAGAAATCGGGGATATCAAGCTGAATAATTCTGAAAAATCAAATTGATGGCTGATTTAACCAAGCGATTAAATCAGGTAGTGATGAAAATCTGAGAATAGCTCTACCTAATGCTTCTAACTGTTCCTTATTTAACACTTGTACTTGCTCAATAATTGATGAATCAATTTCACCAAAGCGTTCATCAAGTAAAAGCCGACAAAATTTCAGTGCTTCTTCTTGTTCACCCCGTTGTTCACCGCGTTGTTCACCAAGTCTTTCACCCTTCTCCAAAATATATTGATAAATCACCGATTCTTGCATAGTCTCCTCCCGTAATAATTGCAGAATCAAATCTCGCTCAAACTTTAACCCCGCCAATATTTCTGTGTATGCAGTCGTATTTTGTCTAGTCTCAATATCTGGAATTTTAGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 39753-40873 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040299.1 Nostoc sp. TCL26-01 plasmid pTCL26-01_B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 39753 37 100.0 34 ..................................... GTTTTACCTGAACCTTGTGCGCCGACAAGACTAA 39824 37 100.0 34 ..................................... AGTGGATTTCTATTGAAGTGATTTTGAATATCTT 39895 37 100.0 33 ..................................... CAATAATTCCTCCACTGCTGCCATCAGCAAAAT 39965 37 100.0 37 ..................................... AGAAGTATTTTATCAGAAGACCCCGATGCAATATTGG 40039 37 100.0 32 ..................................... ACGTTGCCTGAATTCATCCCAGCCCAAATAAT 40108 37 100.0 36 ..................................... AGAAAGCCCAGAGAATTTTCCCGGCTGCTTTAATTG 40181 37 100.0 32 ..................................... AGAAAAATCATTGCTCCCCTCTAAGCGCCAAC 40250 37 100.0 35 ..................................... GATGAAACTGACGCGGTTGGTGTTGCTGCTGCTAG 40322 37 100.0 34 ..................................... CCTGAGTACCAACAGCATCCCCGTATTTTGGTAA 40393 37 100.0 37 ..................................... TCAAGAGTGCTAGTGATTAACTGTTGGATTTCTTCAG 40467 37 100.0 36 ..................................... AGTGAAACTATTTATGTGAGTTTAATTTTTCGTTGG 40540 37 100.0 40 ..................................... ACTCAAATAAACTACCGTGGTGTCTGTGCGGGAAACTGAA 40617 37 100.0 39 ..................................... ATCAAGGGGAGTTTGACGAGTACCTAGAAGGCGGCGAAT 40693 37 100.0 33 ..................................... AGCCAAAACATCCCCACGCAAGACTTGATCCGC 40763 37 100.0 37 ..................................... AGCAGAAAGGCGGGTATCAGCCATCATGAAGGGTTTT 40837 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 100.0 35 GTCTCCACTTACAATGTGGAGGCGAATTAATGGAAAC # Left flank : GCGATGGGTCGTGTACAAGCGTTACAAGATGCTCAAAATTATATCCGAAAAATCACAGTTAAAGAATTGCAGCAGTCTGCTTTAGGTTTGGAAGTATTAAAGACATTGTTAGATGTGCAAGAATTAACTGTAGATAGTAAAATTAATTGTCAAGAAGATGACACACCCCTAAAACATCCTTTTTATTGGGGAGCTTGGATTTGTCAGGGACAGACAGATCCGTTGGTAAAACGTCAAAAGTCAAAGGAAATTTTCGCGGATCTATAGGTGTTTTTTGGAGTCATCTAAATTTTAGGGTGAAACCTCTGGTACAAAAGCCTTTGAGCGATTCCCTTAAAAATGAGATCGACGAAAATCTGGAAATGATTGCCCCATATACTTTTGCAGTATTTTTATTCAATTAAAAACTTGACAGACGATGGTTGAAACAGTACTTTTAAGTGAGGTTGACGAAAACAGGCGCTGTAAGTCCTTCATCACAAGGCTTTCAAGCCCCGGCA # Right flank : CCGTTAAAACTTATAAAAAAATGGCGTAATCTCTGCGTCTCCACTTACAATGTAGAAACTTTTTCTTACTGTATGAATTACTTCTTTTCTTTGTTACGTTATCGCATGATTTCTAATTTTAAAACACTCAACATTTCTTGAAAAAATACGTGCCAATTTGCAGCAGCAGTGATAGCCTTAAGACTCTGGGTATAGAAAAATAAAAAAATATTTATTTAGAGATGCGTACCGCAAGAAATAATACGTCTTTAGTTCAATCTCCTAGATTTATCTATCGGGTTACTCAGTACTTAGCACTCTTGAATATGAATCAAGGTTTTTGAGAACTCCATAGGTCTTGTCAAAGAAAACGGCTGCTGTGCCAGTATCACCATGCCGTGACTTCGCCATGATTAGTTCTAGAATTCCTGGGTCTGTAGTATCTGGGTTATAGTACTCATCCCTGTAAGCGAGAATAATATTGTCTGCAACCATTTCTAAAATTCCTGACTGGCTAAGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTTACAATGTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 20892-21295 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 20892 35 100.0 36 ................................... CGGCAACAGAAATTGGTGTTCTTTGGGGGAGTACAT 20963 35 100.0 41 ................................... GGTAGGGATACTACGCTTGACTGGTTCTTGGTTGTCAAAAG 21039 35 100.0 39 ................................... CTCCACCAACACCCATAACTAAAGCGCCAACGGGATTAG 21113 35 100.0 40 ................................... TTTTCATCATCTGCCTTGCCTGAGGAGCCAAGCCAGACTT 21188 35 100.0 38 ................................... TGGTCACCAAGTCTTGATTGGCCATGAAGCCTGCAACA 21261 35 94.3 0 ............................T.A.... | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 99.0 39 CTTTTTCATCAACTTCCCCTCACGGGGACGTAAAC # Left flank : TTTTTGCCATGATTATTTTGATGGCAGTGACAATTCAACTCTATGCCAAAAAACGCAGGTTAGATAAAGAAAAACTCACAGCCCAAATCACACAAATCCCGCAAGAACAAGGCTAAAAAGCAGCAGATTTCGGTGGAGTAATTTTATACTTTCTACTTCACCTTGACTTTTTTAGTAAGTTTTCATACACTGTATACCAGCTTTGCTGAACCATGAAAAATTAATAAATCAAAATCACAAGTAGATGTTTCTAAGATAACTCTCAATAATTAGATAAATTTATAAGCTACTTAGTGATTGATAAGCATCTGAGGGGATCTGACAATGGCTGAAACCCTGATTACTCCGTTAACCCCCTCAGATAGCTTACTGAGTAAGGCTTTGAGGCCTGTCGTCTTTGGGATTATTGACAATTTTTATCAATTATTTAGAGAAAAAAATGACCCCCTCAGATTGACCTATCTCAAGTTCAATTATGGTAAGGCTTTGAAAAAGGTAGC # Right flank : CGCTGCACTAACGCTAGTCTTCGAGGCTGGGTGGAGGCTTTGCGTAACCCAACATGATCTGAGGAACCCAATGTATATCTTGGTGTTGAGTTACGCTTAGGCAACCAAAGCATTTTATACCATTTCACGTTAATAATGATACACATGAATTATGTAGAGACGTTGCAATGCAACGTCTCTACTGTTTCACATTTAAAAGAAATTGGTATTAGTCTTATCAGCAGCCTTCCAAGATAAGAAAATGGCAAAGGTGAAGTCTGTCGAACTTACGTAATATCTTGGACAAGATGACCAGAGATACTTTAAATTAAGAAATGTTACAAACATAGCTATGATATCTCAAGCGTAAATCATGTCAGATAAACCTCTAGGTAAACCCCGCCCACTGTGGCGAGTCCTTTTCTTGTCTGTAGTCACTGGTATGCTGTATTACGGCTGGTATAAGTGGATTATTCAAGAAGAATTACGCCGTTATTATGGTTTTGGTTGGTCAGGAACTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCATCAACTTCCCCTCACGGGGACGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 2 104557-105553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 104557 36 100.0 37 .................................... ATTTCTTCATCAGCCAGTACTGGGCTGGCGGAAACCA 104630 36 100.0 38 .................................... ACCATTTTCCCTATTTCTAGGGAAATGGTTAAATTAGA 104704 36 100.0 38 .................................... TTGAGTGTGTTGAACCCCAAAATCTACGGCTTTGTTAG 104778 36 100.0 36 .................................... ATAGTGGTTGCAGCAGAAAGACAGATTACTCGATGA 104850 36 100.0 39 .................................... AATTTGGTGTTTGGGATTTGGAGGAAATTCTGCAAGTTT 104925 36 100.0 39 .................................... CTTAAATAAGAGATAAGAAAATATATCAGAAAAATTATT 105000 36 100.0 37 .................................... CTCCTAGTGGGAGGCGCTAACGGTGGAAGCTAAAGCC 105073 36 94.4 42 T.........G......................... AAGTTCAGATCATCGCTACTGCCATGAGCGAAGAAAAATTGC 105151 36 97.2 39 ..........G......................... TTCATCAAATGCCCGCTAGCGTAAAAGCCTTGGGCAATG 105226 36 94.4 39 ..........G....A.................... GGGCAGGAGAAGACGGAATGCGGGATTCATTATATGATT 105301 36 94.4 36 ..........G....A.................... GGTAGACTGTTGATTGTAAAAACAAAATCCGTTACA 105373 36 88.9 36 .....A..G.G....T.................... AGTAGTACCAAAGCACGCTTTCGATGTCGTTGTTGA 105445 36 91.7 37 .....T....G....T.................... TTCAAAGTGGCGCAGCTTGCATCGAGGTCAATTTGCT 105518 36 86.1 0 ..........G...TA..............AA.... | ========== ====== ====== ====== ==================================== ========================================== ================== 14 36 96.2 38 CTTTACGATCACATCGCCCCGCAAGGGGATGGAAAC # Left flank : TTTCTATCCATAGATGGATGCGTTAAAGATGAGAGGTGGTAAACATTCCTCAACTACTTTACACATCTATGCTATTTCTGTCAGCTGCTTTGGAAGAATTATAGCAGCAAGGAAAATTTTACTATAGGACTAGTATTTGATTATTGAAAAAAATCAGTACCCGTCAAGAAACTTCTTACCTATTGCCTATTGCCCATTCCCTATTGCCTATTGCCTACCTACGTAAATTATTAGGCGATCTGATCAGTTAAGTTTTTGTAATAAAATTGACAGCTTCCAGTAACATATTTTACTCTTAAAACTGGAGTGTTGAATTCATCGACGCAGCTCCACCGAACCTTGAAAACCCTATAACTTCGTTGACCTGTGTCGATTGCTTACACAGTCCAGGTTTCAGCCTACAAAATTCGCCAATTCTTAATTTTATTTCGTTGGATAAAAAAGGTGTGTCGAATTGGGGGTCTGAAACCCGCTTATAGTAAGGTTTCCAGAAGTGAACT # Right flank : CCTTGAGATATCGGTGTTGAGTTACGCGCAGATACAGTTCGTGATACCAATTCACAAAAATCCTGATACATATAGCTTACTCGTTGGGTATTGTCCGCCCACCGTTAAAACGGTGGTCTCATAGCTTAAGTCCATTAAAATGGACTCTGATATTCAGTCCTCTTGAGAGGACTTTAGCTATGAGACAGGGATTTACAATCCCTGTCGGACTCACGTATTTGTATCATTATTAAAGTGAAATGGTATGAAAGGCATCGAACCAGTCAAACTATAATTTTTTGCTTCCCCGCAAGGGGATGAAAAGATGGAGATGATAATGGTCAAATTTACTGGATTTTGAGAGCGATCGCCAAAATTAAACTTTAGTTGATAGAAGCGCCATTGCAGTATTTGTTACATTAGTTTTTTGTTGGCATGATAAGGAAATAAAGCAAATGACTAATCCACCGAAAATTCTGGCTTTTGCTGGTAGTTCACGCCAGGAATCCTTCAATAAAAAA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACGATCACATCGCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1004156-1000611 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================================== ================== 1004155 23 100.0 55 ....................... TTGATAATCCTGTCATTGTTCGGCAGATTAACAACGTTACAGTTACTTACCATCA 1004077 23 100.0 56 ....................... TCCATCGAATGAAAACTTGTAGCAATTGTTCGTCTTAATAGTGTTACTTACCATCA 1003998 23 100.0 46 ....................... TTAAACCACCTTTGCTCGTTATGTTTAGTTACGTTACTTACCATCA 1003929 23 100.0 57 ....................... AAATACCCATCCATCTGAGTATTAATTCCCAACCACCACCAACGTTACTTACCATCA 1003849 23 100.0 52 ....................... CCGATGATGGATTCTAGTTTATTTCAATTTACTTTTAAGTTACTTACCATCA 1003774 23 100.0 57 ....................... CTAATTATGGAATAGTTGTTTGGGGTGCAAGAACATTATCAAAGTTACTTACCATCA 1003694 23 100.0 57 ....................... TTAAAACAAGCTTGCGATCGCGTCCATCTTATCCATACGCGCTGTTACTTACCATCA 1003614 23 100.0 50 ....................... ACTTCCTTTATATTTCTTGGAATCTTGACTCAATGAGTTACTTACCATCA 1003541 23 100.0 59 ....................... TTTGAAAAGTATCAACAAACCTTATTATGTTAAAATACCGCTTCAGTTACTTACCATCA 1003459 23 100.0 51 ....................... TACAAATGGTCAAGTATTATACGCAGAAGATGTCAATGTTACTTACCATCA 1003385 23 100.0 57 ....................... ATTTAGAGCTAATGAATTACTCATTTATACTGTTAACCATCCGGTTACTTACCATCA 1003305 23 100.0 53 ....................... TACTCCCTTCTCTTTGCTCCTGGTCCTCAATCTCGGGAGGTTACTTACCATCA 1003229 23 100.0 52 ....................... TAACCTGGGTTATGATGTTTTATGGAAGCTTTATTACAGTTACTTACCATCA 1003154 23 100.0 51 ....................... CTTTAATTTCTAGAGATTCTTGTATATACGAATCAGTGTTACTTACCATCA 1003080 23 100.0 50 ....................... AACTATAGTTTCACTTGTAGACGAAGAAAAACAAGTGTTACTTACCATCA 1003007 23 100.0 66 ....................... GTCGTTGATAAAGCAGCGATCGCCCACCGAGCAGTTTCTGCCTCCTTGTTGAGTTACTTACCATCA 1002918 23 100.0 50 ....................... ACATCCCGTCGTTCAGCCTGACGGTTCCGAGCGTGAGTTACTTACCATCA 1002845 23 100.0 49 ....................... TCTAGACAAAGTTGAGAAAGAAACTTGTAAATTTCGTTACTTACCATCA 1002773 23 100.0 54 ....................... ATTCAACATTAATTGAGTCAATGGGCCTGTCTCACCATTTGTTACTTACCATCA 1002696 23 100.0 52 ....................... TCATAAGTACTATGTGCTGTAGTACTATCGTTTTTTGCGTTACTTACCATCA 1002621 23 100.0 57 ....................... AGCACTTAAATCTGTGCGTAAAGTTTGATTAATTTTTCCTAATGTTACTTACCATCA 1002541 23 100.0 54 ....................... AAAAAGTAGCGGATGGAGAACTTAACAGAACAATGATTTTGTTACTTACCATCA 1002464 23 100.0 53 ....................... TCTAAATACTGTTGGCGAGAGTGAAGAATTTGATGCAGAGTTACTTACCATCA 1002388 23 100.0 65 ....................... GCGGAACTTTTCAGCAACTTTAAATTCAATCTCGGCACGCTGTTGCGCCGAGTTACTTACCATCA 1002300 23 100.0 57 ....................... TCGCAGATGATTACGAATACGAGAGTATACCGAGAGAAGTAATGTTACTTACCATCA 1002220 23 100.0 57 ....................... GTGATAGTTGCGTAATACAAACTCTTGAGTACCTTCTCTGTAAGTTACTTACCATCA 1002140 23 100.0 57 ....................... TAGCGCAAGACCTTTGTTTTCTAGTCATCCGATAAAAGCAAGAGTTACTTACCATCA 1002060 23 100.0 62 ....................... TTGGTAGATAGTTCTTTCTCAATTGCTTTGTACTTAACAACCCCCTTGGTTACTTACCATCA 1001975 23 100.0 55 ....................... CACCTATCGAGGCCGCGCTGCGGTCAAAGGTCTGGAGCGAGGTTACTTACCATCA 1001897 23 100.0 51 ....................... AGAAATCTAAACTAAAGTTAACTAAACCCCACCTAACGTTACTTACCATCA 1001823 23 100.0 54 ....................... ACTACTCAATATAGCAGCAGCCCAAGGAGTAAAAGCAGTAGTTACTTACCATCA 1001746 23 100.0 49 ....................... GAAGTGATGAGGACAGAAGAATTCTCGTACTTTTCGTTACTTACCATCA 1001674 23 100.0 55 ....................... TTCAATCTCTAAATCCTCTAGATCGTAGAGAACACTTTCAGGTTACTTACCATAA 1001596 23 100.0 58 ....................... CCCAACGCAGGCTCCACAGATGGTGATTACTTTTCAGCCACCGTGTTACTTACCATCA 1001515 23 100.0 61 ....................... TTATTAGTGACATACCCCCCGGAGTCAGTAATCATGTATTTACTGATGTTACTTACCATCA 1001431 23 100.0 63 ....................... ATCCAAGACAAATCAATTTCTGTTTTGCGTTCAATAGCCTTTAAATCATGTTACTTACCATCA 1001345 23 100.0 56 ....................... AGTACTTCATTGTCGGCTACACTTGGTTTAACGTCAGTTCTTGTTACTTACCATCA 1001266 23 100.0 56 ....................... TATTAGTAAGTCTCGTGATAAATATCGTGTGATTTACGGTGGGTTACTTACCATCA 1001187 23 100.0 58 ....................... CTTGGTGAAGTATCGATTGGCACCGCTAGACCTAGAGGTACTGAGTTACTTACCATCA 1001106 23 100.0 58 ....................... ACCGAAGACAATCGCTTGCACACTCACCCCGCAAGCGATCGCTGGTTACTTACCATCA 1001025 23 100.0 58 ....................... CCCGTGGTAGTCGAAGGTAGTAAACACGTCCCATCCTCGAATAGGTTACTTACCATCA 1000944 23 100.0 57 ....................... TGGAAAACCTTCATTGAGACGCTAAGAACTGGCCTCCATCGGCGTTACTTACCATCA 1000864 23 100.0 53 ....................... TCCTCGATCCGGTCGATGAAGGCGACGACGGCGGAGCCAGTTACTTACCATCA 1000788 23 100.0 51 ....................... AGGGCAGGCCCCTCTACGTTCCGGGACCGAGCGAAACGTTACTTACCATCA 1000714 23 100.0 58 ....................... TCGCTTGAGATTTTCTTCCTCATCAACAATTATCATCACAGGAAGTTACTTACCATCA 1000633 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ================================================================== ================== 46 23 100.0 55 ATTCCCCGAAAGGGGACGGAAAC # Left flank : TTAAGTTCTTTGTTAGAAAAGCGTTGGTTAGCTGTACTGAATTTGCATGAAGATAATTTGAGGATTTATCCCCTAGATGCGACAGCAAAACAGCAAACGCGAGTGTATGGTAGCCAGCCTCCATACGAACCACCTGATTATTTAATTTTGTAAAGACTCGAATCTAGTTACTAAGGGGGATATACGGCTGGGAATGACTAGTTTTATTAATGATTCGCGGTTTGTAACAGAATGTAACTACTACCGCTAATTCGTCGCTGTGAGCTACATAGATTAAGCTAAAGCAAAGTTGTGTAAATAAAAGCAAAGTTGATTTTTTTGCCTTGACTACTGGAATTTTTCGCACTAAAATGCTCTTAAAGCTAGAATTTAACGTAAATAGATTTTAATTTAGATTACTGTATGTCTAAGTTACATTCCCATTTACGTACTTCGGTGCAACTGAACCTTGAAAACCAAATACATCAATAGTTTCCAACAGGTAGGGTTACTTACCATCA # Right flank : AAAATCAAAGAGAGCGCAACTGCATCTCAAGAAGAGAGTTACTTATAGCGATTTTTATGCCGATGAAGCACACCTGTCTAGTCCAGAGGTCGTAGGGGCGGGTTAAGTGAAATATTAGTGAATAGAGTCAGCATATCTGTTAACCCGCCCCTACTGCTGGTGAGAAATGTGCGTAGCCCTTGTTGACTAAAAATCTGTACCTCAGATCATGTTGGGTTACGCAAAGCCTCCATCCAACCTACTAATGTAATATCACTTCCATGTCAGTTGATAGAAACGTGCCAGCAAAGCGTATCTACAGTCGTAGAATAGTGAAGAATCTACTTAATTTCCTTCCAAATACCTGTGCCACATTTCCTGGTAAGCATTCTCCATATCACGAGCAAACTGCTTACCATTCCATAATGGTGATGTTTTCCTAGACTGTTTTAACTTCCAAGCAATATGTTGTCTTAAAGCCTCATCCTTACCCAAACGCACACCCCAATTTACATATTCTT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.75, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCCGAAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3063676-3064941 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 3063676 37 100.0 35 ..................................... AAAAGTTCGCTGCCCGTTGAAAATTTTGACTTTGG 3063748 37 100.0 31 ..................................... GGCGAAGGAGGAGACAACGATAGTAGTGAGC 3063816 37 100.0 34 ..................................... GGATTTCTGGCTCAAGTTCTTCCTGTTCTTCTTG 3063887 37 100.0 37 ..................................... CCAGTTGGATTTTTGGGTAAGGGCATATTTATGTATT 3063961 37 100.0 35 ..................................... AGGATTGTAATATCCCATGTATTCCCAAGTATGAG 3064033 37 100.0 33 ..................................... GTATGTCGAGATATAAATCCTATCAAGAAAAAA 3064103 37 100.0 35 ..................................... AAGACTCCCACTGGTGTCCGGAACATCCTCGTGAA 3064175 37 100.0 36 ..................................... GTTCCTCTAAAGGCTCTTCAAATAAATCTAGGCATC 3064248 37 100.0 35 ..................................... GCTGTATTCATCTGTAATTGGTTGATTATTGTCGT 3064320 37 100.0 35 ..................................... CGCCAAGCAGCATTTGAATTGCTACCTTAGCTTTT 3064392 37 100.0 35 ..................................... TAACATCAACACTTCAGAGTGCAAAGTATTCAATT 3064464 37 100.0 33 ..................................... CGGGTCTTGTTTCTTTGTTGTACATAATAAAGT 3064534 37 100.0 35 ..................................... CCACTGCCTCCGATGCTTCTAAAAATATCAAAATC 3064606 37 100.0 34 ..................................... TAAACTTTTTTTTGTCGCCATTCAATTACTTCTG 3064677 37 100.0 38 ..................................... CTTAATAATGAATAATGGATTTGCGCCAGGGGAAAAGG 3064752 37 100.0 35 ..................................... CGGGAATTGTTACCGAAGTGCGACTCATTTTAGGA 3064824 37 100.0 44 ..................................... GGGCTGCGACGAACAGGTAAGCCTTGGTTCCGCCCTTCAGAGTG 3064905 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 18 37 100.0 35 GTCTTCACTAACAATGTGGAGGCGCATAATTGGAAAC # Left flank : CTAACAATAAAGATACTTGGAAAAATCAGGTTTTAAAATGTTTAAATTTTGTTGCTAACCAAACCTTTACTTCTTTACAAAAAACTAGTCTTATGTATCAATTACATCAGGATTTAAAACAAGCGTTAATTGACTATGAATTACAAAGCTTTAGTGATTTATTGTCTGAGTAGATATTTGAATTTGCTTGCTATCCTATAGTTTATAGAGATTCATCGCCAACGACATTACTTAAAATACCACCTAAAACTGCGTCAACCAGCAGGTGTATTTATCGATCGCTTGTTATATAACCTGTAAAGGCTTATCAGGTATGGCTCTGGAGGTTTTTAGGAGAAAATGAGGTTCGCGCAAACTCTGTAATCCATACCAGCAAAGTATTTGAGGTCATTTTAGTGAAGGGAGGACTTGACAAGCGATCGCACAAACGTTACTTTTTAATCTGATCCGCGCAAATCGGTATCGAAATCCTTGTATATCAAGTCTTCTCGATCCTACCC # Right flank : CAACTAGGTCTGTTTCTAGAATTTCCATCTATTCAAGTTTCCAATAACAGCGTGGAGACTTTTTAATAAAAATTCGTCAATCGCATCATAAACAGACGATTTCTTACTCTTCTCCAACAATAATAAAAATAAATAAGAATAAACCCAGCTTGTACGATTGCGCGCACAATAGAGGGAATTTGTAATGCCTCTACCCGAATTATTCCCCCACTTTTTCATCCTCCAGCGATTAGTCGATGGTTCTCTCAACCAAAGCCAAAACCTAATTACAGCAATGCGACGCTGGATTCTAATCAATTGGTTTTATGGAGAAGCAAGCAAAAATTGCCAGTGCGATCGCTATAGTGGTATAACCTTCAATGAATGGAGCGAATACTTTTTTAATCAAGACATATTCCATCTGCAACCATCATTTCAATCGGGACATCCTCTTGGTCGTTTGTTGGAGAGAAATGACGAAATCTTCAAACCCCATCATCCCCTCTGCCCCTGTTATAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCACTAACAATGTGGAGGCGCATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 3070799-3071492 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 3070799 36 100.0 36 .................................... GTTTTCAATTCCGATAAATCCCGACGGAGTTCTTCG 3070871 36 100.0 37 .................................... ATTATCTCTACAGGGATGCTCTCTGTAGAGTCCCCTC 3070944 36 100.0 35 .................................... TTGAAGCGGACAGAGTCCTCTTTAGTTGGAACAAA 3071015 36 100.0 36 .................................... TTTTTCGCTATCTTTGTGTTCTCCTCTATAGTCAGC 3071087 36 100.0 37 .................................... GGTTGTCTTACGGCGCTCGTGCGCCATAAAACAAATT 3071160 36 100.0 42 .................................... GAAGCAAGAAATTGCTTCAGGCAATTTAGAAAAGGCAATATC 3071238 36 100.0 37 .................................... TCTCTCCCCTGCAGGAGAGATTGCACTAACGTGAACT 3071311 36 100.0 36 .................................... GAAAATTGACGATCGTTACCGGAAACAGTATAAAAA 3071383 36 100.0 38 .................................... AGCTGTCTCTGCTATTGTTTCATTAAATCCTGTAAATA 3071457 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 100.0 37 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : ATCTAAATGTTAGTCGTTGTTGTATATGATATTCCTAATGACAAAAGACGCACGAAGTTATCCAATTTTCTAGAAGGTTATGGACGAAGAGTCCAGTTTTCTGTGTTTGAGTGTTTTTTGAGTTTGGAGGAAATGCGACAACTTTATATAGATGTGAGAAAGTTAGTTAAACCTGCGGAGGATAATCTGCGTTTTTATTGGATATCTCAAGAAGCTGTTGAGAGGGTGTTAACAATTGGTGGTGAAACACCCCAACCACCTCCAAACTACTATGTAATCTAGATTTGAGGCTATTCTAGCAGGTTTTGTAACATGACCATCGACACACCTCAGCAAATCGCCCAAACCCTTATTCTTTCGTTGAGGTGTGTCGATTACTTGCTATGTAAGGGTTTGACGTATGTGTTTGATTAATTTTTCCGTTGATTTTATAATGCCTTTTAGAGGTGTGTCGATTTGCGGTCTGAAACCCTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : CGATTTTCTCTTCCATAAATCCCTTCGGTATAGTTGTGATGGCACATTTACGCACTAAAGCTACAAACCAAAACCCCGAAAGTAGACTACATTGGAAGCTAAGACTAGTGAGAATGTTGTTTGAAAAAGGGTATAACCGCGAAGAAATAATTGGATTATTTCGATTTATCGATTGGATAATGTCGTTACCAGAGGAATTAGCCAACAACTTTAAAACAGAATTAAGAACCGAAGAGGAGGCAGGTAGAATGCGTTATGTAACCAGCATTGAACGTTTAGCGAAACAAGAAGGTAGAGAAGAAGGTAGAGTCGAGACTGCAAGAGAAAGCATAATCGAAGTTCTGGAAGTGCGGTTTAGGGAAATACCAAATCCGATTCTTGAAAAAATTAATGGCATAAATGATGTATCTCTGCTGAGGGTACTCCTGAGACAAGCGATCGCCATACCTTCACTCGACGCATTTTCAGCACTTATTGACGAAATCAGCTTGTAAATTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 6 3419780-3420100 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 3419780 37 100.0 35 ..................................... AAGGAACTATCGCGCCTCACATTTGGCATTACCAG 3419852 37 100.0 32 ..................................... GATTAGTATACTTGTCCCCGTGAGGGTATTTG 3419921 37 100.0 34 ..................................... GAAAATAATGTAGAAGAAAAGATTCAATATACTC 3419992 37 100.0 35 ..................................... GAGCAAAACATGGGGCTAGTCCACATGGTCGCTCA 3420064 37 94.6 0 ................................A...T | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 98.9 34 GTTGCAACTTAATAAAATCCCTATTAGGGATTGAAAC # Left flank : CTCATCCACACCGCAACACAACCACTTTATCTCGAATGTCTCGGCGAACGTTTAGCACAGTTCTATCAACGCTTTGGCTTCGTAGCCACTAACTTTGAAGATTTGCCAAACTCACTCCAGAAGAAATTCAAATTTACTCATCTAGCTCAAAAGTTCGGCAAACTCCCCGTAGTGTTTATGCAGCATCATGATTTTAGATCCTAGTATGAGAGTGGTATGCGATCGCCACAACACCAAACCATTCACAAATTTGCGTCAACCACTAGATGTTTTTCACAAAAGCCAAATATAGCGCCTGAATCGCTTATCCTATCTAACTTTTAACCATTTATCCTCAAATCGAGGTTGACGCAATCTCTCAAATTTCCACCCAGCACACGTTTTCAGCTTTTTTCACCATCTTGCTCTTGACACCCCATTGTCTAAAAAGCTATCTTAGCTCCAGATTCACACAACCGCACCTTGAAAATCAAATACACCAATACCTTCCATACTGGGCT # Right flank : TAATAGCTTCTGGTTCAAATGCAACTTTTTTCATATTCATCTAAATCAACATAAATTAAATTTCCTGCTTTGACATTTTCTACAGCTTTGAACAGACGTTCTTTGTTAGCGGCTGATTTTAGAAGATAATTAGTCTCATCTTCATTTGAGGTTTCCACTAGTACAATGACTTCGACAACTGTTCCTTCTGGTATTTCAGTTGCCAACAGTTCAATTTTGCCATCTTTTCCCACAATTGCTTTTTGTTTAATCCCACTAATCATAGTTTTTATTCACTTCTAGGTTACTCAAATTGAAATATACAAACTATTGTGACTCTATTTGACTGATATCATACTTGGAGCGATCGCTCTCTTTCTCCTAATATATTATCTAGAGTTTCAACTGCAACTTTTTTCATAGTTACGATATGTAGGAATAGGTTGCTTAGTGACGACAGCATAAAGAACATCTGGATCTAAATCTGCGCCACTATCCCAGTGAATTGTCCCCCATTCATC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAATAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 7 3883667-3882627 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3883666 37 100.0 32 ..................................... TTATAAAATCCCTTCGCCTGCTTGGCGCTGGG 3883597 37 100.0 34 ..................................... ACGACAACCGGAAACTAGCCAGCGATGCCAAATT 3883526 37 100.0 34 ..................................... GGCGGACTTGTCTGGAAATGGCAGATCAAATCGC 3883455 37 100.0 35 ..................................... AGCTATTTCAATTACCTTGTTGTTTTTGAATTTTT 3883383 37 100.0 34 ..................................... TACCAGATAAACCCCACTACAAAATTGAACTTAC 3883312 37 100.0 35 ..................................... GAACCTCATTGAGCTTACTGATAATTGCATCACAG 3883240 37 100.0 37 ..................................... ACTACTATGGTAGTATATTCTTAATGGTTGAGGGCAA 3883166 37 100.0 34 ..................................... GTTTGGCGCAGAGGGATTACCAAAAAAGATTGAC 3883095 37 100.0 36 ..................................... GATTGATTCCCATAGATTGGCAAAGGCATATTTAGC 3883022 37 100.0 36 ..................................... GAATCGCTCCGTCAAGTTTAGCTTGGAATTTTTGGA 3882949 37 100.0 35 ..................................... ATTTAAGGATTATTGATGGATCTTTAAGTGACAAT 3882877 37 100.0 35 ..................................... GAATTACTAAAGTTACTGCAATGCTTAAATTATCA 3882805 37 100.0 35 ..................................... TGATTCATCATCTAAGATGAAAGAATATGAACAGC 3882733 37 100.0 33 ..................................... TCATGTAGCATCAGTTTCCAGCGCAGAGATAAC 3882663 37 97.3 0 ........G............................ | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 99.8 35 GTTTCTATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : CAGAAGATAAACGTCGCACTAAAATTCACAAGACACTCAAATCTTATGGTCAGTGGATGCAGTATTCTGTTTTTGAATGCGACTTAACACCAACCCAGTATGCTAAACTGCGATCGCGTATAGCAAAACTGATCAAACCAGACCAAGACAGTATCCGTTTTTACTTCCTCTGTGCTTGCTGTCAACCAAAAGTAGAGCGCATCGGCGGCGAAATGCCAATAGATACCACTGTCTTTTTTGCGTAACTTCTGCGTCAACCTGTAGGTGTTTGGCAAACAAGCTCAAATTTTTAGCCCCAAATGCTTATCCCTGCTGCTTTTAAAACCTCTCACACTACAATTGAGGTTGACGCAACCAACCAAAGCCTTATTTTTACAACCTTTCCAGCACTTTTCTCACAATCACTCTTGACAATCCAAAGTCTGAAAAGCTACCTTGATGTGGTATTCATGAAACTGCACCTTGAAAACCAAATACATCAAGCATTTCAAACCCAGGCC # Right flank : AGCAGCCCCTATTGTTAACCTAATCCCTCTTTTGTTACTATGGGGAGAGTATAATCAGGAAAAAAGCAGACAAAGTAAGTAAGAGGAATGGTTACGGCGCGCAGACAGCCAGTAAGCACAGTGGGATTCATAGATAACTATTGCCAGCACTATTATTCAGTATTTGAGGATGTGAGGCATTTTGAAGCCTTCAAATTCTTACATTTGGGCATACTTTCAGAAATCCCTCGAAAAACCCTACCAGAAATAGCTAAAACAATGGGGTTAAAAGATAGCCAAACACTACATCATTTTTTGAGAGATGCACTGTGGGATGTCAAAAAATTAAGAGAAATTAGGCTGTGGTTGAGCAAAACGTTTATTGGAGAAAGAGAAATAATTTTATGTATTGACGAAACCGGAGATCAAAAAAAGGGAAAATCAACAGATTATGTGACTAGGCAATATATTGGAAACTTAGGTAAAACAGAGAATGGAATAGTATCCGTCCTATATTTTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 8 4352921-4354050 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4352921 37 100.0 39 ..................................... TTGAATAAAAGCTATCTCGTCGCTGGGTATACCGCGCTT 4352997 37 100.0 34 ..................................... AACTTTGCATTCTTGCTGCAACCTCCGGGCGATC 4353068 37 100.0 34 ..................................... AAGTATTTAACTTGTATTAAACTAGTTTTTCTCT 4353139 37 100.0 35 ..................................... GGCACGATGAATTAAATACCTACCTGATCCGTAAA 4353211 37 100.0 41 ..................................... ATAAAACCCAAAACCTAACGTACTGGGCCGAGATTAGGCTA 4353289 37 100.0 35 ..................................... ATAAAACCAAGCTTTTATAAAAACTCTTCCCTTGA 4353361 37 100.0 42 ..................................... AGCGCCTTCGAGGTCAGCGCCTTCGAGATCAGCGTTTCTCAG 4353440 37 100.0 35 ..................................... GTTGCTCAAATTCAGCTAAATCTTGAGGCTGCATC 4353512 37 100.0 33 ..................................... AAACAAAGCGATGAAGGACAAGTATAAAATGCA 4353582 37 100.0 34 ..................................... GCGCTTCGATGCTAATTGGTCTCCTCTTATTCAG 4353653 37 100.0 35 ..................................... TTTTAATATCATTAATATCTCCTTTTTTTATTAGT 4353725 37 100.0 36 ..................................... CGACCATATTTAGTTTTGCGTCACAAGGATAATCTT 4353798 37 100.0 35 ..................................... CTTACCAGTAGGTAAGACGGCTTTATTTATGGGCT 4353870 37 100.0 34 ..................................... TTTAAGATACGGCGTTCCGTATTGTAATAACAAA 4353941 37 97.3 36 ...........T......................... CACCTAACTGCTTCCAGACTTTTGTGTAGTGAACGC 4354014 37 97.3 0 ......................A.............. | ========== ====== ====== ====== ===================================== ========================================== ================== 16 37 99.7 36 TTCTCTACTAACAATGTGGAGACGATTTAATGGAAAC # Left flank : AAGTATGGGAAAAATACTAGAAAAAGATAGAAAGTATAAGATTAAATATGCTAATCAAGCTTGTCTTCCGACAGAAATTTTGACAGAAATCACGAATATCAGTCAGCAAACAGCACGGATTTTTAATAAACCTGTTAGTCAGTATGTTGGATTGAATAGTCCTTACTATATTTACTCTGATGTTCGTGACTGGGTTCTAACTCAGTTAACTCAAGATGGGTTGCAAGGATCAGTTCAATGAAAGGACAATTGCGCGAATCTCTAGCTGTTTTAATTGAACAAATGTTATATAACCCTCAAACCCTCTTCTGTTCAGCGTTTGCGTCATTCTCTATGAAATAGGAATGCGCGCAAATTCTCAAACCCTTGCTGTAAATACATTTGAGCGATTTTTCTAGAGAGGAGATATTGACAGGCGATCGCTGAAATTGTACTTTTGAATGATATCCGCGAAAATAAGTCCTGTAAGTCTTGTTTTTCAATGCTTTCAGGCTTCAGCC # Right flank : CTTACCGAGTCATGGAAAAAATCGTCATTCGCACCAACACTAAAGCACACTCATACGATCGCACTCTAAAATCAAACATAACAAATTCAGCAAAATATATGCCAACAGCCATACTCAAAAATCAAGTATCAACCAAAACTGACTCCAAAGCAGTCGCGCATTTTCTCATCGGGACACCAGGAAGCGGTAAATCTACCTTTGCAAAACACATATCTAGCTTAGGAAATTGCGAAATCATCTCAACTGATGACATCCGCGAAGAGTTATATGGTGATGCGACGATTCAAGGGGAATGGCACAAAATCGAGGCGATCGCCCTTCACCGTATTTGTACTGCATTGAGTGAGGGTAAAAGTATCATCTATGATGCTACTAATTATAAGCGTTGTTTTCGCTTTGATTTTTTACTCAAAGTCAATAGCCAAGTTGCAGAATGGGAATTAACTCAACCTAACTGGATTGCTTGGTACTTGCAAACTCCACTGCAAACTTGCATTGAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCTACTAACAATGTGGAGACGATTTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 9 4368503-4370285 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 4368503 35 100.0 37 ................................... ATTATATATCATAAACAAATAGCAGCGTCAATGAAGC 4368575 35 100.0 40 ................................... AAAGATTTTACTCTTCGCAAAACGGCTTTGCCTCTCTTAA 4368650 35 100.0 37 ................................... CAATCAGTGGGGACATACTCCATAGTACAAAACTCTA 4368722 35 100.0 37 ................................... TTCATCAACCCTACTGACGTAGGCAGTTCGAGTTATT 4368794 35 100.0 36 ................................... GTTTCTCCCCGGCTTTCACCGGATAAAAAACTTTCA 4368865 35 100.0 37 ................................... CACCATAATGTGAACAATACCCACACTACGACAAGTG 4368937 35 100.0 36 ................................... ATTGCGGAAACGTTTATCTACCCCGATGGATAGTGT 4369008 35 100.0 41 ................................... TTGTTGATACAGAACAGCAAAAAGTCTTAGCGGAAAGAACG 4369084 35 100.0 40 ................................... TTGGCGGCTTTACTTGCGTGCTGGGTTCGACAACGGTTTC 4369159 35 100.0 38 ................................... CCTCATGTAAATCTTGCAGAAGCTGATCGTTCTTAGCT 4369232 35 100.0 37 ................................... CGATCCGCTTTCCCCGCTATCATTCCCTTCGTTTTTT 4369304 35 100.0 38 ................................... CCGCCTGCGGAGGAGTAACGGGGCGTACATTCAAGTTT 4369377 35 100.0 36 ................................... GGTCTAACCCTCTCTCCATATCTATCGTTAATAGTA 4369448 35 100.0 36 ................................... GTTTGAATCCAACCTGATCAATTGAGACGATTTGTC 4369519 35 100.0 36 ................................... CGCGATTAGAAAATTCAGCATTACTTTCGCCAGGTT 4369590 35 100.0 34 ................................... GCAAAGCGCCGTCTTGGATGACTGTCCAGCCAGC 4369659 35 100.0 40 ................................... AATCATTTTTGCGTGAGAAATACTTATCTCACCGAAAACT 4369734 35 100.0 39 ................................... TTGCGTCTGTTTTGGAGACTGAAGAAGCATGAAAATTGA 4369808 35 100.0 37 ................................... GACTCGAGGGCTTTTTCGGCCACCAAGGTTCCTCCGT 4369880 35 100.0 39 ................................... ATTCTTAGAGGATCTTACCAAGTTTTGTTCAATATTTGA 4369954 35 100.0 42 ................................... TATTGCCCTAACAGCAGTTCAGCTTCAAGAATTTTATCAGAA 4370031 35 100.0 36 ................................... ACCTTTATTCCAGTCCAGACCGTGTTTTTTTAGAAA 4370102 35 100.0 43 ................................... CGAATGGCATCGCTATTTAGCCATAGAAACATTTCGCAATACT 4370180 35 100.0 36 ................................... TCAGAGGAGCAACCTCATAATAATACGCCGTCCCAC 4370251 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 25 35 100.0 38 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GTTTCGAGCTTTGGTTGTTGATTCTCTGGTAATATATTTGACTAATAAAAACATTTTTACCATAGAGGATTTTACCTCACCTGATGAACGTGGTGGTGTTTATTTTCAACCTCATGCACTCAAAAAATTTCTCAAACACTGGGAGGAAAGATTACAAACAGAAATTACACATCCACACACAGACTGTAAAGTACCTTACCGTCGCTGCATTGAGTTACAGGTACGGGAGTATATTGCTTGTTTGATGGGTGAAGTTGATGTATACCGTCCAATGATTTGGGATAAGTAAAACTTAACTGTTGAGTCATTTCGGGGCATAAGTAAAATGGCTGAAACCCTGATTGTTTCGTGGAATGCCCCGGTAAGCTTATCCTGTAAGGGTTTGGGATTGTGTTTTTCTAGTTTAATTCTCTATTTAGGCTCTTGATTTTGAGTAAATTTGACAAGCCCCGAAAATCTGCTGTAGGATTAGCTTCAGGTAAGGTTTTCAGAGCCTAGCC # Right flank : CAATTCTCTCGAAATCGTCTCTGGTAGTTTTTAAATTCTTTAAACAGATAGTGCAATGGATAAACTAGAGTATTATCGCGCTTGTATCCAAACCCTCTTGGAAAAGCATAGCGAATATAAATCCCGTGATGAAGATATAGAAAGCGCACTATTATTTGATCCAGTACGCGATCGCTACCAATTGATGCGTATTGGCTGGAAAGGCCTAAAGCGAATTTATCACATTGTTATACACTTTGATATCAAAGATGGTAAAATTTGGCTTCAGCAAAATACCACTGATATCGATGTTGGCGAAGAACTATTAGCAATGGGTGTTGATAGAGAAGATATTATTCTGGGGTTACATCCTCCCTACAAGCGTCCTTATACTAACTATGGTGTTGCTTAACCCAACATATGATTGTGTTTAACCCGCATTTCTCACGAAATTTATAAAACCGAAGTCCAGAGGCTGTAGGGGCGGGTTAACGAGATATTCGTGAATGATTGAAGCTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 10 5222956-5221602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5222955 37 100.0 34 ..................................... CAGAAGGTAGTAACCCTAGTTAGTCGGATTGCTA 5222884 37 100.0 37 ..................................... ATCAAAGACTTACTACTCTGCTACTGCAACGCGGTAC 5222810 37 100.0 34 ..................................... GGTTTTCGCTTATATCTTGCTGACTCAGGTAAAT 5222739 37 100.0 40 ..................................... ACTCAAGTATTGGCGCGGTGGTTTTGGTGGAGCTAATAAG 5222662 37 100.0 35 ..................................... AGGGAGAGGGCGAATAAGTAAGTGTAGCCCTTACC 5222590 37 100.0 36 ..................................... ATGACTTTGAAGAATGTAGTCACCAACTAAATGAGC 5222517 37 100.0 34 ..................................... CAAATCTTTGCCCCGTGCAATCAGGTTTTGCCGC 5222446 37 100.0 35 ..................................... AAAGCTTTGGCGATCATGAGCTTTATTCCAGGAGG 5222374 37 100.0 35 ..................................... ATCTAAATTAATACCATCCCAACCGCATTGTCCGT 5222302 37 100.0 34 ..................................... CTTTGTAGTTTCTAGATATCCAAGAATCTGGCAA 5222231 37 100.0 37 ..................................... AGTACGATAGGTTTGTTGCGGGTGTTGCAGCCACATC 5222157 37 100.0 33 ..................................... ATGCAGTTGATCATGCCGGATTAAGTGCTAAGG 5222087 37 100.0 36 ..................................... GCCGCAGTTCGCGCTGCGGCATTGCCTTGAGAGTGA 5222014 37 100.0 41 ..................................... ACTAACAAAGCTTTCCAGTAAACTGAGTAAGAAAATCAAAT 5221936 37 100.0 40 ..................................... AACGTAAATAGCAACGCTTAAGGTATTAAAGATTGTCAAA 5221859 37 100.0 35 ..................................... GGCGAGATTGACGAATACTGCTGTGATATCCTTGC 5221787 37 100.0 35 ..................................... AAGTGCAGCTAACCTACAAGCAGTATCAAATAAAA 5221715 37 100.0 40 ..................................... CACTGGTACATTTTTTGGCGAACGCCATTACGCACTGGAG 5221638 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 19 37 100.0 36 GTTGAAAAACAATAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTAGAATTACAGGTATGACCCGTTACGCTTGCTTTTGGGTGGAAAATGGCGAAATTATCGCCCCTATCGAAAACCTCCGTTTTGACGAAAGCCTCTACCGCTTCTGGGGAGAAAATCTGATAGATTTGACCACCTTTCAAGAATTTATTCCAGAGGTGGGAACCTACGAAAATCGTCAATTGGGAGGTAGCCTAGTTCCAGGAATGTTAGTCAATAATTTTACCTATACTTTGTAAGCTACAAGAAATTTGCGTCAATAGGTAGGTGTTGTAAAAACAAACCACAATAAAATCGGTGTGTTCCTTGCAGCACAAAGATTTCAGCGCAAAATTAGCAAAAACACATTGACGCAAAACCTGAAAGTCTATCTATGTAAGCATTTCTGCCAAAATCTTATCTTCCCTCTTGACGATACCTAGTTATAGAATGCTAATATGTGTCCACATCGACGCAACCGAACCTTGAAAACTAAATACCGTAAGCCTTTTGCTGCTGGGCG # Right flank : TACGGGATTACCTGCTCAAACAACAACGCGAATAGTTGAAAAACAATAAAATTCCTTCCTATTTTTTATCAACTCAATTTTACATATTCACCTAAATCATGATCCCGCAAAACTTGTCCCATTTTCTGATACTCCCGACGCATGGCGCGGATCATGTGTGTCATCTCAATCACTCCTCCATCGTCGGCGGCAAAAAAAGCTGCACTCAGGGCAATATTGCGAATATTCGCGCCGGTCAGAGCGAAATTTTGTGCTAGAAAGTCTAAATCTAGTTCAGGATGACAGGGTGTATGCTTAGGAAAGATTTTCTGCCAAATTAGCTGACGATGCTTTTTATCAGGTAAGGGAAACTCAATCATAAATCGCAATCGGCGCTCAAAGGCTTTATCCATATTATCACGTAGATTAGTTGTTAAAATAGCTACTCCATCATATTCTTCCATTTTTTGTAAAAGATAACCTACTTCAATATTGGCATAGCGATCGCGTGCATCCTGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACAATAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 11 5466251-5467002 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 5466251 35 100.0 35 ................................... CACTGTTCAGGTTTGGCCGTGGGAAAGTTGTCCTG 5466321 35 100.0 38 ................................... TGCTTATCATAGGCAGAAGAAAGGTTCTTCTGCCTGAA 5466394 35 100.0 38 ................................... TAATTGCTTTGAGCAAATTATTTCAAATATAAGATCTG 5466467 35 100.0 36 ................................... AGAGTTATTACAGTTTTACAGCAAAGCTTCACGCAG 5466538 35 97.1 36 ...................A............... AGCATTATTAGCAGTTTTGAGAAAACTGCCTGGTTG 5466609 35 100.0 37 ................................... CATTAATGGGAACAAAAAAGCACTCTGATCCCCAAAA 5466681 35 100.0 36 ................................... GAAAATTCTGCTTCTGTTACTTTGGAAGATTTGATT 5466752 35 100.0 37 ................................... TTGTATTTTTAGACGCAATTTTTGAAAATATTGCGGA 5466824 35 100.0 36 ................................... GAGGTATGGCTTGGAGAAGCATACAAAAAACTCCCG 5466895 35 100.0 38 ................................... ACCTTAGAAGTAGGGGGGCAGCTGTCTGAAGGCCGCCA 5466968 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 11 35 99.7 37 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : CACCGAATACCTAGTTAATTACAAACTGCAAATTGCGTACAGACCTTTGGGTATGAAAACATCAGAGTAGGACGTTAGTCTCTTGCAAATTATAACTTTACTGTGACTGCCAAATGTAAGCCTATAGCATCTAATAAAGAATTTAGACTGTAAAACTCAATTTTGCCTTTATCTGATAGCATTTGGTCAAGTTTATTGTAGAGTTCCTTAACTTCTGTAGAAAGCTGATCAACTCCACCATGCGATTCTATGACATTTTGAAGTGCTTTACTTAACATTTTTGGGTCGCCTTCTTCTAAAACAACTTCAATATAAGCTGCTGCTTCTAGTGGATTTTTTAAGTCTTGTATTAATTTTTCGTGATAGCTTGTACTTCTAGGCATCATCTCTACTCCTGTAGTCTCGCCAATATTCTTTAGCTTTAGCAATATCTTTATCTTGAGGGGTAAAGGAATTAAAACAACATTATAAAAAAACAAAACCAAGACTCGCGCTTGAAA # Right flank : CCCTACCCATTTAGAAGTCTTATCCAGAGAGGGTTACAGATACCTATTTTCGCGGGGGGTCTGATTTACCTGTCAATAAGCTAGGTTTATTGAGAATTTACTGCTAGTAGACCCTTCTTAAAAGCTTACTCAGAAAGCTTTTCGCGGGGGTCAACGAAATAATCAGGGTTCTGGCGATCGCCTGACCCCCGCGAAAAATTTGCGTACACAAAGTAAAAACAAGTACTTTGGGATTCACTTGGAAACGTCAGATTAAGTTTTCAAGGTTCTGTCTGTTGTTTTAGATAGTATCACAAAGCACTCTGACTTTTGACAGCATCAAACACGAACTTAACATAAGTTTTCTCTACTACCGCCTGAGTTATGCAAGTTAAATGTGGAATAGCTTATCTCTCCCAAATCATTGGTCGATACACTTCCACTTCACCCTTTAAGCATGAAATATACTCCCGTACCTGCAACTCAAGAGCGCGACGGTATACTAATAATTGTTGAACTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 12 6084762-6088622 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 6084762 37 100.0 37 ..................................... GGCTGTAACCGACATGAAGGCGCGAACGGGGAAACAA 6084836 37 100.0 34 ..................................... TAGCTCTGCCCCGGATGAAATGATAGAGAGATAT 6084907 37 100.0 36 ..................................... TCCCCTGACCTTGGTTTCACAGAAGGTTCAACATCC 6084980 37 100.0 34 ..................................... GGGAGGCAGTCTAGAAAAGACCAGCCCATGATCT 6085051 37 100.0 35 ..................................... TGCGATCGCTTCGGCATAGAGATTTTCAATCTCTA 6085123 37 100.0 40 ..................................... GACCTCAGAGGCGCTAACCTCAGAGGCGCTGACCTCGAAG 6085200 37 100.0 34 ..................................... AATTCTTTAATGTGGCGAATCTCGCCACTTGTAA 6085271 37 100.0 34 ..................................... ATAGATTTAATCGACAAACCCGTACTTGGACAAG 6085342 37 100.0 35 ..................................... TGGTAAAGGTGCAGGAGCAACACCTGCGCTTTATA 6085414 37 100.0 37 ..................................... AAACGTAATCAATATGGTGATTCAGCTCTTGAACCAC 6085488 37 100.0 36 ..................................... AAACTCTTGATTGGATGAATAAGTCGTTTGCGCGAA 6085561 37 100.0 35 ..................................... CCGGCAAACGCTCAAAGTACTGGGCCTGTTGCTGA 6085633 37 100.0 35 ..................................... GTACTTAAGTTTCCCGAATAGAAGATAGTATTGCC 6085705 37 100.0 36 ..................................... CAGATTCATATCGCTGCTGATACTCACTTCTAAATT 6085778 37 100.0 36 ..................................... AAAATACCAAGAATTGCAGTACAAAAAGCCAAAACT 6085851 37 100.0 36 ..................................... AAGTTTAAGATTCTTCAAATTCTCCAAACGTCTAAA 6085924 37 100.0 35 ..................................... TTATTATTTCTAATCAAAGAGGAATATCAACTGGA 6085996 37 100.0 38 ..................................... CCGTCAGATGATATTCCTAATTGTTTGCAAGCAGCAAA 6086071 37 100.0 37 ..................................... ACTGGCAGCATTCAACTTGACCGCAACTTTGAGCAGA 6086145 37 100.0 34 ..................................... CGCCCTGTGATCGCCTATAGGTGATTATCCAGCA 6086216 37 100.0 37 ..................................... GAGGCTTATTTTCGGTTATTGGAACTTGTTTCGTTGA 6086290 37 100.0 34 ..................................... ATCACTGTCTGAAATCACCCAATCTATTAAATAG 6086361 37 100.0 34 ..................................... CCTCAGTTGGTTGATGTTGAACTCGTCCCACCAA 6086432 37 100.0 35 ..................................... TTAATAAAAACAATTTCAACTATTATATCAGATGA 6086504 37 100.0 32 ..................................... CTTGTTCATCCATTAATCCATCGATTTCTAAA 6086573 37 100.0 34 ..................................... AAAATACTCATCAGGAAGAACGATTTTGCTAAAA 6086644 37 100.0 34 ..................................... AAGCCTTGTGAAAACAACAAAAAATTAACACTGA 6086715 37 100.0 37 ..................................... ATCAAGTGATCGCGCGTATCGCTCAACTTCCTCTAAG 6086789 37 100.0 36 ..................................... CGATTCCTTGAATGTGGCCACAATCATTCTGCCCTC 6086862 37 100.0 35 ..................................... TTCATCATCATAATTATCATCTTCCTCTACTAAGG 6086934 37 100.0 31 ..................................... GAAGCAATTTGCAGCAGAATACAAGGGTGAA 6087002 37 100.0 34 ..................................... GATATACTCCCTGGCTTGAGTGACTATCCTTCAA 6087073 37 100.0 33 ..................................... TAGATTTGCCATTTGTGCCATTTACGAAAATGG 6087143 37 100.0 35 ..................................... TGCTAGCACTTCCATGTACCAGCCAGCATCGCCGC 6087215 37 100.0 33 ..................................... TACCCACTCCTCATGCTGAAGTCGGTAAAATTT 6087285 37 100.0 35 ..................................... AACCGCACGGCCAGCCAGACGGGCGCGTCATTCAG 6087357 37 100.0 36 ..................................... AAGTGCGATCGCTTGTCTTGTTGGGCTGGCGATTGC 6087430 37 100.0 35 ..................................... GATTTGGATTTGCAGCGATCGCTCACGCTCTTGAG 6087502 37 100.0 32 ..................................... AAAAAAAATCACTCACTGAGGCGGCCACTAAA 6087571 37 100.0 37 ..................................... ACAGGCGAAGTTGATTTGGTTGTGGCTGATGCCCTCC 6087645 37 100.0 41 ..................................... CACTCAAGGGAACTAAGAACAATAAACGGAGAGTTTTTGGC 6087723 37 100.0 34 ..................................... AGACAGAAGATTTACTAATCGCTGCAAAGACCAA 6087794 37 100.0 35 ..................................... AACCCAGTATTAATTTTTTGAGAAAGCAAGCCGCC 6087866 37 100.0 35 ..................................... AAAAATGACATCTTACAAACTCAGCAGCAGGAAAA 6087938 37 100.0 34 ..................................... CTATCCAGTGGGTATCGTGTTGGGGCGCAGTTTT 6088009 37 100.0 32 ..................................... AGTACCGGGTAATCCGCGTAATCCGTCACGCC 6088078 37 100.0 36 ..................................... GTCACTTGAACAACTATTTGGTGCAGGAGTTAGCCA 6088151 37 100.0 36 ..................................... ATCGATGAGATGAGCGATCGCACTCCATCCGCCAGT 6088224 37 100.0 35 ..................................... AAGCAGACATGAAAACAGAGGGATGGTTTACCTAA 6088296 37 100.0 34 ..................................... AGGTAACAATTATTGTAAAATTCATCATCCACAA 6088367 37 100.0 35 ..................................... GAGAACATCAAAATAAGTACCTGTGTCTAGCTTGC 6088439 37 100.0 36 ..................................... CTCAATGGTGATATGGATGAGCCAATAACTTTAGCA 6088512 37 100.0 37 ..................................... TGGTAATTGGGGGGGAGTGCAGCAATATCAACTTGAG 6088586 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 54 37 100.0 35 GTTTCTATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : TGCTCAAGCTCAAGCCAAGCTCAATGAGTATACACAAAAACTCCGCCCCCAATCTCAAATACAACCAAAGGTAGCCTACAATGTAGTTTCCGTAACTCAAAAAGCCAAGTCGTTATTTGCTCACAGTTCGATTAATCAGTTACCATTACAACCAGAAAATCAACTGCAAGAAGTAAATATTCAGTGGTAAGGATTAGGAGTTCGACAATCAACCACAAGCAACAAATATTTACGATTGGAGAAAATAGTTGCGTCAACCTATAGGTGTTTTTCCACTCAGAGTGAATTCACCCTTGTAAACCCTTATTCTGTCTAGTTTTCCATCCTGTTTACCAGAAATGAGGTTGACGCAATTTCTCTAACTCCTTACAGGAAGCACATTTTAGCGATTCTTTAAGATGTCACTATTGACAACCCAGCACCTGAAAAGCTACTTTAGTTCCAGGTTGACGAAACAGTACCTTGAAAACCACATATACAAAGGCTTTTAGTCCCCGGCG # Right flank : CTATCCCATATCATTGCCACAATGAGAAGTAAGACAGTATTTGTAGTGGCGTGTCTAAACTAAAATGTTGCAATAGATTTAGAGAAAATTAACCGCAGATGGACACAGATAGACGCGGATGATAATGCACGATTTTAGCCTAGACACGCCACTACGTAATTTTTAGAAATCAAATATGAGTTCTAGATATCCTGGAATTCTTTGAAAATTCAGAGATTTGAACACTGCAAATTTCTACAAAAGGCAAATTAGAAACCAATTAAAACTACAACCCATTAATAGTAGGTGAAGGCTCAACTGGCTGGGGTGTGGGATTGAGGAATTGCTGCCAAATGCGGATTTGCTCTTGGGCAGCACCATAAACAGAACTGCTACGAGGAATTAATCGAGCAGTTTCAATAGCCTGAGATAAATTAGAAGTTCCCTCAGAACGGGCAATATCTAATAATTGCTGACTCCACTGCTCGATACCTACATTGGCATCCATCCGTAAGATGCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //