Array 1 103612-102522 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR812490.1 Planktothrix rubescens NIVA-CYA 18 strain PCC 7821, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 103611 36 100.0 36 .................................... TGCATATACTTTATTGTTGAAGCCTTTAGATAATAA 103539 36 100.0 42 .................................... GCAAGAGCAGCTAAAGCAGGTTTCCACCGATTAGGTGGAGGA 103461 36 100.0 31 .................................... TCTTAAAGTAAGGCTAGTTATCTAGCCTTAC Deletion [103395] 103394 36 100.0 38 .................................... ACACAAAGTTACGAACTATATAAACGTCCTTGGTACTA 103320 36 100.0 41 .................................... AAACTAGCTAACTCTTTATCCATTAACTTTGCGAGGAAAGG 103243 36 100.0 39 .................................... ATCAAGTAGAATCTCTGCATCAATAGCAGAAATAGAATT 103168 36 100.0 40 .................................... AGTGGAGGATTTCAACGGTTTCGGCTGTGAATTGTTTGGT 103092 36 100.0 36 .................................... TCGCAGTTTTTCACTGTGTCCGTCAAATTTCCTACA 103020 36 100.0 41 .................................... AAGACCCTTATCAATTCCTTTTCCTGTAAAGTAATGTTTAA 102943 36 100.0 42 .................................... AGCTTTGGATGCTCCATGACAAGTTCAAGTCTGTCGTCATAC 102865 36 97.2 41 ...........C........................ CTACCAGAGGAAATCATTATGTTCAAACATCCTTTTTGTGC 102788 36 97.2 48 ...........C........................ AGTTTTTCAGTAGTATGTCCACTATGCCACACAGTTTGAAAGTCTCGT 102704 36 97.2 37 ...........C........................ TTGTTTCACTTGTCATTTAGAGATTCCTTTGTTGTAA 102631 36 97.2 38 ...........C........................ TCGACCTCGATCACCACTTCAACCGGAATCGCAACAGG 102557 36 97.2 0 ...........C........................ | ========== ====== ====== ====== ==================================== ================================================ ================== 15 36 99.1 39 CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : CCAATCAATTAATTTCCCTAGCGAGTAGGGAGGGTGTTGAAATCGAAGTTTTGATGTCTCCTGATTTAAACCGAGGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGCATTCCGAGCCATGTCTCAGGGTGTCTACGGGGCGGGGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGGATAGGAGAGTCGAGAAAGTTTCTTGACAGAGTTCCATTTAATGTGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGCTAAGATTGAACTGATTCCTGGTCAGTGTCTTCCTTCCTGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGTCCGGTCGAAAGTTCAAAACCCCTATGACGAAATTAATAAGTTTCCAATCAATTAATTTCCCTAGCGAGTAGGGAGTCTCGCCATTGGGGAACAGGTAGCAATCAATAACTTTGCTCCCTAGATTCAATTCTGCACGGATTGATCTTACAATATCTGACA # Right flank : GTGAAGACAAAATTAGTCGAAGTTTTTTATTAATGTGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATCTAACTTTGGGGGACACCTCTACCGCAAGAATACTGTCCCCAGCCTGACGCTCTAGCAGTAAAGGCAATTCCCCAGCCGGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTAGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTCAACTTTTGAAAAACTCCAAAAACACCCTTTTAAAACTCAAACAAACTTACTTTCCCCACTCGCTAGGAAAATTAATTCAATCCGATCGCACAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATAGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 103696-104972 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR812490.1 Planktothrix rubescens NIVA-CYA 18 strain PCC 7821, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================== ================== 103696 36 100.0 40 .................................... TTATTAATTTCGTCATAGGGGTTTTGAACTTTCGACCGGA 103772 36 100.0 39 .................................... AGGAAGGAAGACACTGACCAGGAATCAGTTCAATCTTAG 103847 36 100.0 45 .................................... ACATTAAATGGAACTCTGTCAAGAAACTTTCTCGACTCTCCTATC 103928 36 100.0 37 .................................... CCCGCCCCGTAGACACCCTGAGACATGGCTCGGAATG 104001 36 100.0 43 .................................... CTCGGTTTAAATCAGGAGACATCAAAACTTCGATTTCAACACC 104080 36 100.0 41 .................................... TGGCGGTCACCATGTCTAATTTAGACATAATCTTAGAGGTA 104157 36 100.0 44 .................................... ACTGAGTACCATCAGAGGATTCACACCAGTGTCAAGTGCAGCAA 104237 36 100.0 43 .................................... TGGATTGCTCATTGACTTAACAGCATCAATAAGCACTGCTGAA 104316 36 100.0 35 .................................... TTCCGGCTAACAGGTGCATCAAATCATTGGCTAAT 104387 36 100.0 47 .................................... CATTGATAATCAAGCCAACTTTCAAAGCATTCATCTTGATAATTTTT 104470 36 100.0 44 .................................... GGGAGAGTAAACTTAACAGCACCTTTGAGAAAGGAAGGACCATC 104550 36 100.0 42 .................................... AGTTCATACACACATGAAACTATATCCTAATCAGCCAATGGG 104628 36 100.0 42 .................................... AGTAAAGGAATGTGAGACTTGTTAGGCGGAATTCCCCTCCCT 104706 36 100.0 50 .................................... TCAGAATAAAAACACTATAAGAAGGATTAAACCCCTTCTTATTTTCTTTA 104792 35 88.9 3 ........................-A...C....G. GCA G,G,CT [104815,104822,104825] Deletion [104834] 104834 35 80.6 66 ACAA......-...............C...A..... ATTAGATTATTGTAAAAATCCTCATTGATTGGAAACGTCAACCTAATTCGTAATTCGTAATTCGTA C [104837] 104936 36 77.8 0 A.T.A...........A.............C..TCG | C [104965] ========== ====== ====== ====== ==================================== ================================================================== ================== 17 36 96.9 41 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : ATTCTACTTGATGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGCCTTTCCTCGCAAAGTTAATGGATAAAGAGTTAGCTAGTTTGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTAGTACCAAGGACGTTTATATAGTTCGTAACTTTGTGTGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGGTAAGGCTAGATAACTAGCCTTACTTTAAGAGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTCCTCCACCTAATCGGTGGAAACCTGCTTTAGCTGCTCTTGCGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTTATTATCTAAAGGCTTCAACAATAAAGTATATGCAGTTTCCAATCAATTAATTTCCCTAACGAGTAGGGAGTGTCAGATATTGTAAGATCAATCCGTGCAGAATTGAATCTAGGGAGCAAAGTTATTGATTGCTACCTGTTCCCCAATGGCGAGA # Right flank : GCACTAAAAAAAAGCCCCAGTTTTTACTAGGGCTTTAGTGGTTATAGCAGTCGCCAGACCTATTAGGACAAAGAGTGATGCAGCAAAGCTAGACGGTGAAGTCTTTTTATCCGGTGTTCCCTCCCCCCCTAGCCCCCCGTGCACGGGGGGCTAGGGGGGGCTGTTCCCTGCTATAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAAGATGAAAAGCCGAGAAAGTCTGGAGGAGGAGAGGGCAGAAAGGGATAATGGTGCAAGGAATTAGTGACAAAAAGTTAATTCAGATTTTATTGACCTTTGCCTCCAGATTTGCTTTTAGCAAAATAAGTCTGAAACATTGCCTTAGCAATAGGAGCGGCGGATTTAGATCCATAACCCCCATTTTCCACCACGACCGCGATCGCAATTTCTGGATTTTGGGCGGGGCCAAAAGCCACATATAGGGAGTGATCGGTTTGTCCCGATACCTCCGAAGTTCCGGTTTTACC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 2050997-2049694 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR812490.1 Planktothrix rubescens NIVA-CYA 18 strain PCC 7821, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2050996 37 100.0 42 ..................................... TCCCCGTTCTTGCTCACGATGTGAGTCTTTATTGCATCCTGA 2050917 37 100.0 43 ..................................... CATTTAACTCTCCTAGGTATTCAGTGGTTTGGAGATAATAGAT 2050837 37 100.0 35 ..................................... ATAGGACAATATTCTAGGGTTACAGTATTGCCATT 2050765 37 100.0 41 ..................................... TCAAAGATATTAACCATCAAACCTTCTAAGGGTTTATCAAA 2050687 37 100.0 39 ..................................... AACTTGTGTAACGAACTAGGGTATATTGACGAGCGTAAG 2050611 37 100.0 34 ..................................... ACTATATCGCCAACGTCGAGCCATTAATCTTTGA 2050540 37 100.0 35 ..................................... GTCAAAACTGTATCAGTGTTAATATGACTATGTGA 2050468 37 100.0 38 ..................................... GACGACAGTACAGGGATGGATTAAGTTTTGCCATCAAC 2050393 37 100.0 35 ..................................... AATATCCCCGTATTCGTACCCGTATTTTGAACCAG 2050321 37 100.0 37 ..................................... AAGTAGTCTTATATCCCACTCAAGGGGATGAGTTAGA 2050247 37 100.0 37 ..................................... ACAAAATCCCACTAACAGGAATCTGTCTTGTTTGCAA 2050173 37 100.0 37 ..................................... CAAACGATTGAATGATTAATGATTAATATCTAAACAT 2050099 37 100.0 37 ..................................... GGGAGAAAAATCTATCCCCAATGGTTGAGTCTCGCAT 2050025 37 100.0 37 ..................................... GAAGAGTAAACTTTCCAGTCGCCTGTTTTATTGCCAA 2049951 37 100.0 37 ..................................... AACTCGATGACCTAAAAGGTTATTGTGAAGCTGCCCA 2049877 37 100.0 36 ..................................... CGGCGGTCGTTTTGTTACTTCGCTGTGGGTTGGCTG 2049804 37 100.0 37 ..................................... CCGCGCCTTCCTTTCTGGTCTGTGATAGTAGATTCTG 2049730 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 18 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : TGCGATCGCTTAAAATTACATCCCATCCTTGCAATTTTAACAACCGGGCGGCAGCATTTCCCGATCTTCCTAAACCAATAATATGAACTTTCGGCATAGACAATGTAATAATTCCCAGTAGGTTGTTTTTGATTCTACTCGGATATGTTTCAGTCCCGCAAGTGGGATTATTTTAATTGAAAGAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGAGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACACAAACAAAGTCCACCTACGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTTAAGATATCCTTTTCCCCTAGAACAGAGTGATCT # Right flank : TCTGCCGTTTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATCATAATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACAATAGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAACTGCTCACCGTTGGGGTAATTTCTGCTAAAGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAAGCTTTTGTTTTAGGAACTAATTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 2143162-2143872 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR812491.1 Planktothrix rubescens NIVA-CYA 18 strain PCC 7821 chromosome I, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 2143162 37 100.0 42 ..................................... ATATAGCCGCTTAAATCCATCAAAACTGATAGGGTGACTCTT 2143241 37 100.0 35 ..................................... AAAAAGACTTCTCAAACCATTGATCTTCTATGGGT 2143313 37 100.0 35 ..................................... TTAACCGACAAGATCAACCAAGCTATTAAAGCGAT 2143385 37 100.0 37 ..................................... ATTTTAGTTACCAGATAATTTTTTACGATTAACTGAT 2143459 37 100.0 47 ..................................... TAGGAAAAGATCAATAGGCTGTAATAAAACTTTACATATCCCTAGAA 2143543 37 100.0 37 ..................................... TGGACTCACTCGCTCCTTCTACCGTTGATCGTATCTT 2143617 37 100.0 37 ..................................... AACAATGCTAGTAAACTTGTGTTAACTATGTTAGACT 2143691 37 100.0 36 ..................................... TATCAAGGCGATCACCGACAAAATTCTGATGGAAGA 2143764 37 100.0 35 ..................................... ACATGGATCAATTTTTGTAAGTCATACTCCAAAGG 2143836 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 10 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : ATTTTCAAGTTCAATCTTAAAATGCGTAGGAAGATTGAAAAAAACTAGAAAAAACGACTTAAAGTTCCTCAAATTGTAAGTTAGATCAAAATTAGATGAAATTTAACAAAACGTAGGTATTTATTTATAGTTACCTACGTTTTGTTGAAAAAACAGCTAAATTGCCAAGCACTTTTTTCAGATATTTAATTAATCTTGACCAACTCGCATAATAATCGACTTCAATCCATTCATAATATCCTCAAGAGATTCAATAATTTTTAAGGTTTCTTTTTGTTCAGTTTCATCATCTAATTTAGACAAAAATTGAAATAATTGGTTAATTCTTTCTTCTTTTCTTTTTCTTTTTTTAATTATTAACTAATAGTTTGAGCTAACTCCAGTGGGAACGCCAGGGCTGTTTCATCAGCCAAAATTTATGTACAAACAAGCTAAAGATCGTTGATATTTTCGGCTATCATTCTTTGAGTCATTGTCGAAGAATAATAGCCATTAATAAG # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGAGTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAGTAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCCCTGACCTCAAATAAAAAACCCCGCCTCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAAAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 23279-22843 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZCZ02000003.1 Planktothrix rubescens NIVA-CYA 18 strain PCC 7821 map unlocalized plasmid pI, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 23278 36 100.0 44 .................................... ATGACAATTCTTTTAGCTTCAGTAATTGAATAAGGCAGTTTCCA 23198 36 100.0 40 .................................... TACGAAATAGACGGCGGTTTGTATTTCTCCAATTGACCTT 23122 36 100.0 45 .................................... CAGTTGTGAATACTTCATGTTTATTACTTTTTAGTGTACCCATTA 23041 36 100.0 48 .................................... TAATCCAGAGATCTTTCCAGCGAGTTACTAATTGGGATGTTGTATCTT 22957 36 100.0 43 .................................... ATACTCTAAGTTAAATTGCTTTGAATACTCGCTTTTTGTAGCG 22878 36 91.7 0 ................................GT.T | ========== ====== ====== ====== ==================================== ================================================ ================== 6 36 98.6 44 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TTTTCATTATACCCTATTTAGATGCTGAACAGCTTAATGGATTCAAAAATATTTATTCAGTTATTGCTGTATCTCCCACGAATTACGCAAATATTCCCGCTCTCGCTTAGACGCTACTTTGACAGGGGGAGGAGGGTGAGAAACCATTTTTGCCTTCTTACCCAACTTTACATCGTGCTAAATTTTGCGCGTATCTTGTCTTTACCCCATAACCTGCGGTTTTATCCCCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAAAGATTACTGAGTATCCGAGTTCAATAATTATTTGATGTTTTTTGCGAAGCTGAAGCTTGAATGCCTATGATATCGATTCTGCTGTTTATAGCCTCGCCTACCCTTCCTGTAAGGGTTCTGAGATTTTGATTCAGGAGTAAAATGTTGTTTCAGCCAACTGTTTTTATCAGTCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : TTGTTCAACATGAATTCAACAGGATTAGGAGAGTTGCTAATCCTGTTGAATTCATTGATTGCTTGATTAAGTTGTAAAACTTGACAATAAATTGAGTTATATTTTATTAACAATATTAAGTAGGTAAACTTAATATTGTTCTAAGAAAAGCCTTGTAAGTCTGGTTTTAATTGATTGATTCAACTGATTAATTAACTTATGCAATAGCGGAACATAATTCTGTAGAGTCTAAACCTTCAAGGCTTTTTAAATTCTGAAGAACTTGGAAGTTACCTGAACCAAACAAATGTAATTCTTCCTTCGCCCTCGTCATGGACACATACAGTTCCCGCCGCCCTTCTGCTTCATTGCCGACACCAAACTGTTGTACCCACAGAATCAACACCGCTTTGAACTCTAAACCCAATGAAGATTTAGCCGTAATGATTCGCACCCCAGGACGACGATTGCTATACTCTCGTTTATCCTGGTTTACCCAATAATACCCCATCCCCAACTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 9076-8575 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR812492.1 Planktothrix rubescens NIVA-CYA 18 strain PCC 7821 plasmid pI Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 9075 36 100.0 44 .................................... TGGCTCAGGTTTTGGAGGATTGATAATGGGGTCAGTAAAATTTT 8995 36 100.0 38 .................................... TAAGATTCTTCGTATTTATCATTAGGGACACCTCTTTA 8921 36 100.0 37 .................................... TCAAAGGCATCAATAAAAATAGGGACAAAAGCCTCAA 8848 36 97.2 53 ....................A............... AGGTATAGGCAGTTGCCAAATTCCTCGATAAACCACTTTCGGTTTGCTTGGGT 8759 36 97.2 42 ....................A............... ATACGAACATTTTGGATATTGTACTGGTTTTGTTCATCAGTA 8681 36 88.9 35 .......C..G......A..A............... CAGGTAATGACAGCACAAACCAGATTAGGAAAATC 8610 36 86.1 0 ..T...................A...C...AA.... | ========== ====== ====== ====== ==================================== ===================================================== ================== 7 36 95.6 42 GTCGCCCTTTTATTGGGGTGGCGAATTAATGGAAAC # Left flank : ATGCAAACATGGCTGTACCAATTATGGAATATCTAAAACCTTTGGTGACGGGAGAGGAAAGGGTTAAATTCACGAACCTTATTAATCACCTGAATTTGATTGTGGGAGGAAGTTTGAATGTCGGAAGAATGTGTGAAAAATGGTTACTATTGTCCTTTTGTTCAAAATCCTCATCAATTGGATCAATATGTTTGTCTCAAGTGTGGAATTAAACGGGATTTAGAAAAGAAAGAAAAGTCAGAAGTGTTGGATTTTATCATCCTTTTTTTAGTGGGGATATTAATTGCAATTGTATTTTTTAGGCGTTGATGGATAGGTTTGCGAGGCTGCGGTAAAATGGCTACAATGTTGATGGTATCGTTAGGAGGCTCGATAGTCGATGGGGAAAGGGTTTGACGGGTTTTTAAAGGGTGTGATCATGGGGTTGGAGTGGTCAGATTTCCTGAGCCTCGCAAACTGGGTCTGGACATTCGGTGACATATAGGGTTTAAAATGGAGGG # Right flank : CTAATAAAAAATCCCTGACTTAGCTTGAGTTCAGGGATTTTTTATTGATAAATTTTAAGTTTGGCGTTTTATAAGCGATCAGCTAAGTCTTGAAGATTTTGTTCAATTAAATTAACATCAGAGTTATCATTTAATAATCCCAGAGAATGCAAAGCTTTAATAAATGGTTTTTTAACATTCAGATTATAAACCTTTTGAACATTTTGGTTTTCGTCAATATTAGTTTGGTTGTTTGGATCAATAAGATAACGAAGAATATCTTTTTTTTCTCCACCTCTCAAATTATGAACATATTGGTTTCTTAAATCTAAATCATGGGTTCTGCTATATTCACAAGACCATTCTAATAACTTCCACTCCCAATTTTCAAGATTTAGTGTTTCTTTAGCCAAACGTTGCAGCCACAGAAATAATCGAAAATTCATTAAGTTATACTGAAAGTCGTTCTTGCGTTTTTGCTGATGGCAAATATAATTTAAAGTAAAATCATTATGCCAGTT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTTTTATTGGGGTGGCGAATTAATGGAAAC # Alternate repeat : GTCGCCCTTTTATTGGGGTGACGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 18440-17320 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR812492.1 Planktothrix rubescens NIVA-CYA 18 strain PCC 7821 plasmid pI Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 18439 35 100.0 38 ................................... GTTCAGTTTTAAAGTATATCGCTGACCTACAACTAGGT 18366 35 100.0 39 ................................... AGTTACCCTATTGGTTCTCCTGTGATGGGATCAATAGGT 18292 35 100.0 37 ................................... TTCGATAAACCATTATAATTGTCGACTTTGGGAACAC 18220 35 100.0 37 ................................... TGATTCTCTTCATTGTATTCTACTACTGAAAAAAAGA 18148 35 100.0 38 ................................... TAAAACAGTACCTACAGTAGGCTCTTTTAGAAGCATGA 18075 35 100.0 35 ................................... GAGAACCAATAGGTTCTCTTCGTTGTGGGGTACAG 18005 35 100.0 37 ................................... CTTGGAAACATCCAAGGTGTCGTTTCCGAGGTCACCA 17933 35 100.0 39 ................................... CTCTTGAACATTATCAATATAGCCAAAAGATGAGAAAAT 17859 35 100.0 40 ................................... TTGTCACCGGGATCGGTAATTGGATCCCCGCGGAGTGAAA 17784 35 100.0 31 ................................... TTTTCCTCCTCCAAGATCACCAGGATCCGTG 17718 35 100.0 40 ................................... GCAGCCTATTTTTGAATAGGTTTATACTCTTTAATCTCTG 17643 35 100.0 38 ................................... AGAGTTTCAATATCCCGGATTCGGGATAAAAAATTCTC 17570 35 100.0 41 ................................... CTATTTAAGCAAAATAATCCCGTGGTAAATGTCACCGTGTG 17494 35 100.0 36 ................................... TATCAGTTCTTACGAAAACATGGCGACCTTTTTGAT 17423 35 100.0 34 ................................... TGTCTCCTCACTACCTAATAGTTGGTAGAAAATA 17354 35 94.3 0 T.................................A | ========== ====== ====== ====== =================================== ========================================= ================== 16 35 99.6 37 CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Left flank : GAGTTTCGCGCTCAAATTGTTGACTCGTTTGTGAGTTATTTAGTCAATTCTAAAATTTTATTGCTTGAAGATTTTACCTCTCCTGATGAATTGGGTGGGGTTTATCTTCAGCCGGATGCACTCAAAAAGTACCTGAAACACTGGGAGGAAAAGTTATATTCTGAAGTGACTCATCCTCAAACAGGATACAAAGTTAGTTTACGACGTTGTATCGAGTTACAAGTCCGAGAGTATATTGCGGCTTTGATGGGAGAGGTGGAAGTTTATCGCCCGATGATTTGGAAAAATTAAGGATACAGGTTAAGTTTCTGAGGGGGTCTGGGAATTGCTGAAATCCTCATTCTTGGGTTGACCCCCTCAGATCGCCCTCTCTGTATCGATTTCAAGGATCGTTTATTGTTGTTTATTGAGAATAAATAGTATGGATTGAAGTCAAAACTTGACGCCCTCAGATTTAGGGGTTTATAATCCAGTCAGAGCAAGGCTTCTATGAGCCTAGA # Right flank : TTAAAAATAGTCTCAGCCTTGGATTTTAAAATATCCGAGGCTTTTTTAGATATAAAATCAAGAAAATATACTCAAAAAAATATTGAAAAATATATTAAAATAAGAAAGATATATAACTTATATACAAACTTATATAAACCTTAATTTTACCTAGATATAAACCTATATAAAGCTCTGCAAAAATTAGCTCAAAGGAAAAAATAAACCGTAAAAACTAATTACTGTTTACGTTTTTCCTGAGTTTACCCTAGAGTTAAATTGTGTTTATGCCAACAATTTATGTCATTCATCCAGGTTCCAGTATTGACGTGCATTCTCGTTACCTGCAAGTTTTCCATAAACAGCAGTTGTGTTTAGGGGTTCCCATTAACCGAGTTACCCAAATTATTCTGTTTGGTATTTGTAACCTCTCCCGCAAAACTCAAGTTTTAATTGCAACTCGCCAAATTCCTGTCTATTATATTAATGTTCATGGGGATCAGTTAGGAAGTTTAGAACTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //