Array 1 87928-87428 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWDI01000007.1 Companilactobacillus formosensis strain S215 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 87927 37 97.3 29 G.................................... TTATAACCTTCAAATCCCTTTTCAGATGG 87861 37 100.0 29 ..................................... TTATCTTAGTAAATGACAGCGAAACAGCA 87795 37 100.0 29 ..................................... AATATTGTAGCTGTTCGAATGAAACATCG 87729 37 100.0 29 ..................................... AAGTCGTTAGTGAGCTGTAATAACTCTGT 87663 37 100.0 29 ..................................... CGGCTCTATTTCTTTGGGGCTAGTGATAA 87597 37 97.3 29 ......................T.............. TTCTGAAATACCACCAGAAACAGTCACAT 87531 37 91.9 29 ......................T...G.......G.. AATTTTATAGTTTAGAAATAGCGATAGAG 87465 37 78.4 0 ..........A..TA......T.....T..GG....T | T [87457] ========== ====== ====== ====== ===================================== ============================= ================== 8 37 95.6 29 AGTTTTAGAAGTAAGTCTTTCCATTTACTTAAGAACC # Left flank : TGATCTCGGTTCATTTAATCTCAACGCAAGCAATCAAATGAAGATAATCCTAAAAAAGATAATCGAAGATTCTCAAATAATGCTTAATGAAATTGAAAAAGTTAATACCGATTTAAATAGCGTTGTTTTTGACTCCATTACTAGATATTCGTTGCCGTTAACCCTTGATATGTACGCCAATTACGAAAAACTTTTAAAGTCAAAAGGCATCAAGATTGATTCTAGTAACTGGGCCAATTACTGTGATAAACTTATGGATGTAATCAGTTTTTATTCTGATTTCACTAATAAAAAATTGCTTATTTTTAATAACATCTGTCGTTTGTTAAACGTCAATCAGTTAAATGAGATACATACTTATCTAAAATCCGTTGATTTAAAGCTAGTTTCTTTAGAATCTTATCCTATGATTTTTAAGGAGGAAAAACTAAATGCTAAAGTCTATTCAATCGATAATGATCACGTTAGGTTTGATTATTAGAAGTTGATTAGAAAACAAC # Right flank : TGCTATACTTGTCCTCGTTAAGAGATTCAGATCAATAAATCATTTTTGGTATACTTACAAGTACGTCATCTCAATTACTTGTTTTAGAAGTAAATCATCTCAAATAAAAAGCTCTAGTACAGAATCCCAAACGATTCCAATACTAGAGCTTTTCATTTTTTATCCTAAACTCTTTAAAACATAATCACCCAAGGTCCGGACACGTTTCAAATCATCTTCATCTGGATCTTGGTCAATCTTCACGGAATCAGCAACTTGTTCGCCATTACTGGAATTCAGTTGCATTGTGAAGTAATCTACCGCACGACCAAAGTGAATGTGTCCTTTGGAACTTGATCCTAACACCGCAAATTTAGTTCTTTCTAAGTCAATATCTTCCAAATCTTCATAAAAATCTTGGGCTTCTTCTGGCACTTCACCATCATTGTAAGTATAAGTATCGACAATCACAGCATCGTAACTAGAAATTTCATACGCATCAGTATCAATCATTTGTTCTA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAGAAGTAAGTCTTTCCATTTACTTAAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 646569-647524 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWDI01000001.1 Companilactobacillus formosensis strain S215 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 646569 36 100.0 30 .................................... TTATGCTAAGGCTAATTTAAGGTACTTTGA 646635 36 100.0 30 .................................... CATAAAGCAATTTATTGACCACAGCAATGT 646701 36 100.0 30 .................................... CGCCGCCCCGTTTCCTAGTGCTTTGATCAT 646767 36 100.0 30 .................................... TTATTTGAACCACCGTTAAAAAAACTGAAT 646833 36 100.0 30 .................................... CCCTTTTTAACGTCGTTCTTTGGTACCTCG 646899 36 100.0 30 .................................... TGGGGGTCGTTTTGGGAATCATCTATTCAA 646965 36 100.0 30 .................................... AAAGTGTATACGACCTGTCAACCGTGGCCG 647031 36 100.0 30 .................................... TATCGTCAACAAGGAAGTTAAGAGATTGCT 647097 36 100.0 30 .................................... ATACTCACACAAAATTGAGCGGTGGCGGTC 647163 36 100.0 30 .................................... CCAACGTAACACCGTCTGGAATAATATTTT 647229 36 100.0 30 .................................... CCATTACTTCAATATTTTTTTGGTCAATTT 647295 36 100.0 30 .................................... TTTTAAATGTATCGGTGGACTTGGCAGCCT 647361 36 100.0 30 .................................... CATCTTTAATATCGATGTAAACACTCTCGT 647427 36 94.4 26 ..................................CT AAGGATTCTTTTCTTGATACATATAG 647489 36 83.3 0 A...C..............A.CC....C........ | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.5 30 GTTTTTGTACCTTAAAAGATTTTAAAAGAGTAAAAC # Left flank : AGTTTCGATTGGAAAATACTGGTCTGCCGGTTTGGTTGATATTTTATAATCTAGATAGTTTTATTAGTTCTAAAGATATTGAGCCTTTTTTGATTGAAGTTAAAAAGTTAGTAAGAGAATATGATTTGAAGCTAATTTATTTAGGAAATGATTTGAATAATGTGCCACTTGATGCTAGTGAAATAGATAATGTTGTAGTATCTACCAATGAATTTCATCAATTGCTACCAATCGATGAATTAATGAGATCAATTCAATTGTATTATCCAAATGAATTGCAGTTGTCAAAAGATGAAATTGCACATTCTTTAAAGAGGATTGTTCCCTTAATTGGAAGTACTGAAAAAGTTTTTATATCTAACCAAGATTTGGTATTATTAAAAGTAATGAATGAGATTTTAGGCTATGAGACGTCATATGATTTAAGAACTCAATCATTAACAGATGCAGAAACCAAATTTTTGGAAGATTAATTAACGGATTAAAATTTTGAGTTTGAG # Right flank : CTCCAAAAAGACTAGATCAGGTGGAATCTAGTCTTTTTATTTTGGAGAAAAAGTGTCATTAAATTTAATATTATTACATTTTCTCTAATTAAAATTAACTTTAACCATAAATACCTATTGCCCAAATTAATATTCTCGTTTATGATAGTCTCAAAACTTTCCAAGGAAGAGGGATCACTATGAAGGCAATTTTGACAGTAATTGGTCATGATCACGTTGGTATCGTGGCTAAAGTTTCAACTAAGTTGGCTGAATTGAACGTTAATATTATTGATATTTCGCAAACTTTGATGCACGAGAATTTTACAATGATGATGATGGTAACGCTTGATAATTCGACTCAATTCGACACAGTTCAACAAGAGTTGGCTAGTCTTGGTCAAGAAACCGGTTTGGATATTCGCATTCAACGTCAAGAAATTTTCGATGCGATTCAAAAACTTTAGGAGGTCAATGATGGAAACTAATTCGATTTTAGAAACAATCCAGATGGTCTCGGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACCTTAAAAGATTTTAAAAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //