Array 1 908164-909783 **** Predicted by CRISPRDetect 2.4 *** >NC_004116.1 Streptococcus agalactiae 2603V/R, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 908164 36 100.0 30 .................................... TAATTGCCAATGCTTACAATATCTTCGTCA 908230 36 100.0 30 .................................... ATGTTCTGAATTACCTTTCTCGACACTCCG 908296 36 100.0 30 .................................... ACCATCAAGGCTCTTATCTGCAGATTGTTA 908362 36 100.0 30 .................................... AAATGGTTGCCAATGACTTTCTAGAGTGAT 908428 36 100.0 30 .................................... ACAAAATCTTTTGTTGCTCCTGGACGTATT 908494 36 100.0 30 .................................... ATGTAAGGTATTGTAAAACTTCTTCTTGCG 908560 36 100.0 30 .................................... ACTGTTCCTATAATTAAAATAAAAGAGGTA 908626 36 100.0 30 .................................... TGTTCCAGTAAAAAGTAATTTTAAAGCATT 908692 36 100.0 30 .................................... CGCTCGATTGATGCTATCAACTATATTGAA 908758 36 100.0 30 .................................... TTCTTCAAGAGAACTTGTAGAACAGCTTCA 908824 36 100.0 30 .................................... AAGGTACTTTTAGCTTGTTCTTGTGGTGTT 908890 36 100.0 30 .................................... ACAGCTACTGTAAATTCTGCTTTTACGGTT 908956 36 100.0 30 .................................... TAGTGCAGTTGTCAAGGAGATTGTGAGCGA 909022 36 100.0 30 .................................... TTTAACCTTTGAAAATGTGAAAGGCTCGTA 909088 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 909154 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 909220 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 909286 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 909352 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 909418 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 909484 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 909551 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 909617 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 909682 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 909748 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGATAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //