Array 1 134-1001 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWPJ01000004.1 Pigmentiphaga humi isolate dnA1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 134 28 100.0 32 ............................ CAATCGAAGTAGCGTTCCGTGATGGACTTGGG 194 28 100.0 32 ............................ CGCAGATGGTGACATCGGCCCTAGGCGCCATG 254 28 100.0 32 ............................ TGGGACGGATGGGTGCCGTCAGGCATGAACGG 314 28 100.0 32 ............................ AATCCAGCATAACTAATCTTGCATCACCAGGC 374 28 100.0 32 ............................ GCCGGCGATGTACCGACAATCGGTCATGGTTC 434 28 100.0 32 ............................ CCGGAGTCTTGGGCGAACATCGAGTTGTCCAC 494 28 100.0 32 ............................ GCAAGGGGGTGCAGCATGAAAGCGGCCCCGTA 554 28 100.0 32 ............................ TCGGTCAGCGGCACCGCATCTACTGCGGGAGG 614 28 100.0 32 ............................ TGGACGCCCATAGACAGCTCTCGGGCGATGAC 674 28 100.0 32 ............................ ACACGTGCGGGCTTCGGTGCCGCGCTTGCCGG 734 28 100.0 32 ............................ CGTACCTGGTGCTGAACCCGCAGCGTGACTCC 794 28 100.0 32 ............................ TATCGCCCACAACACACCGACGCGCAACCTCG 854 28 100.0 32 ............................ TTCCAGCTGGAAGCGGACGCCATACCACGAGC 914 28 100.0 32 ............................ AGGACGACGAGATGCTGGGCGCGGTCCGTGAT 974 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 CTTCACTGCCGTGCAGGCAGCTAAGAAA # Left flank : GCAGAAGCCGAAGAGCGTTACTATCGACAACTCGCGGCATCCGCTGCGGAATCTGTTTTACTTTAACAAAACAGCCTCCGCGATTCCCGGTGTGATTCAATCTCGCCCGCGCGCAGCAGTTCGAGGAAGTCTCC # Right flank : AAAGCAAGCCAAGAACGGGGGCCGGACTTGGCTCTTCACTGCCGCATTGGTGCACGTTAACTTATTGAAACTATTTGCTCGGCTCTGTAGCATTGCGTTAGGTAGAGCCAGAACAATAAAGGAAGGCGCCTGAACCGTCATGCGATTCAGCATTTGTCGAGATAGGATGCGTCCAGCGTTTCACTGGTCTGGATCTACTTCTTCTGTGCGTTTAGCAGCGAGACAGAGCTATGCCTGACCCCATCTCCGCGGGTCGTCGTGAGCGCATCCACGCCAAGATCGATGAATTCCTCGCCGGGCGTTTGATCGTCAAGCTCGACAAGCTTGCTCCTGAGGATCCCAAGCGTCAGGAGCTAATTACCCAACATCAGCGACCCGCATGGTTGGAGAACGCCGCCCGCCGCGTGCAGCAAATCCAACTCGTCACTCATACGCTGAAGCCCATTCATCCGGATGCGCGCGGAACCAATCTCTACATCGATCCGGGCGTAATGGCGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGCAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 99281-99011 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWPJ01000011.1 Pigmentiphaga humi isolate dnA1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 99280 28 85.7 32 ...C.....T...G.A............ CATATGAGGACGTCCGCATCCCAGATCGTGGC T [99269] 99219 28 85.7 32 .TC.........GG.............. CAGAAGCCGCCGCGGTCCTCGAAGTTGCCATC 99159 28 85.7 33 GT.C........G............... CTTACCCTTAAAGGGCCCCAAAAGGCCTTCTAG 99098 28 100.0 32 ............................ ACACAATGGACAGCCGCCGCCCTGGGCTATCG 99038 28 71.4 0 CT.C.....T.A.T.......C.....G | ========== ====== ====== ====== ============================ ================================= ================== 5 28 85.7 32 ACTTACTGCCGTACAGGCAGCTAAGAAA # Left flank : TCAAGATTCACCTCGGCCGGCGCGCAGGAAATCGCCAATGCCAGCAGCCACTGGCGCATCCCTCTGGTTTGGCTGACTGGAGTGTTGCCGCAACGTCAGCCATTCCGCGCCGATCCGCGTCCCAAGGTCGAACTGGTGCTGCTGCCCAATGAAGACGAGGACGATTTCGAGCTGGCCCGGATCGAGGAAAAAAATGGCCGGACTCAGACCGTTATCGAAGATGCGCTGCGACACCAGGTTCCTGACCAACGGTTCCGCGCCGATCGAGTGGTGCCTTGGGGCCGAGTGGATTTCATCGCGGCACTGACAGAACACGCCGAGGCCTTCGAGCTGGACTTGATGAGCTGCGCCCAGCGATTTGCGAAGGTGACGATTCCTGATGAACTCCAGGGGTGGAGGTTTCACGCGGCACTGGGGTTCAGCCGGGCGGGGTAGAAAATCGATGAGTTCTTTGCGACGATAGAAAACGGCTTGGGCTGTGCTCGGAAAGATCTTGGTCA # Right flank : TAGAAGCCCGAACATCGCCCCGCATTCAATTGGCAAGCAAGCCGTCCCCGCAAAAGCGGGGACGCCCTCCCCTACGCCCCACCCTCCACATAAAAATGCTTGGTCGCCAAAAAGTCATTCAACCCCTCCTGCCCATGCAGCCTCCCATACCCGCTGTCATGGTGCCCGCCGGTTTCGGCTTCGGCGAATAGGCGGTTGTGGGTGTTGGCCCAGACCGTTCCCGAGCGGATCTGGCTGGCGACGCGCCTGGCCCTGGTGGCGTCGCGGGTCCAGACGCTGGCGGCCAGGCCGTAGCGGGTGGCGTTGGCGCGGGTGACCGCGTCGGCTTCGTCGCGAAAGCGTTCGATGACGAGCAAGGGGCCGAACAGTTCGTTCTGGATGAAAGGGCTGGCCAGGTCTTCGACTTCGACCAGGCTGGGGGTGATGAAGGCGCCGCGCGCGAGCGGGCCGTCGCCGATGTGGCCGCGCAGGTGCATGGTGTGCGACCGCGCGGCGTCGTC # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 103898-105124 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWPJ01000011.1 Pigmentiphaga humi isolate dnA1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 103898 28 100.0 32 ............................ CGGGAGAATCCGCAACAAGCGACCCAGCATAG 103958 28 100.0 32 ............................ AGATCGTCAGAGAGCCTCGTAGTGGACCATTA 104018 28 100.0 32 ............................ GGTGACGATCAGCAAACAATCGGCATTGCCGA 104078 28 100.0 32 ............................ CGGTCCAGCCGCTCGATTTCGGCGAGGATCAG 104138 28 100.0 32 ............................ TTATCTAGTAACCCCAACTTGCTAGATTGCGT 104198 28 100.0 32 ............................ AAGCGGTAATCGATTGGCGCGCTGCGGCCGCC 104258 28 100.0 32 ............................ CGATTAAGCCGCCAACGCTCCCGGTCTTTGAG 104318 28 100.0 31 ............................ CACCGCTCTACCACCGTCAGGGGGGGTGTCT 104377 28 100.0 32 ............................ GAGCCAGCAGAACGCTGACATCGCAGCCGAAC 104437 28 100.0 32 ............................ ACAGGCCGGTGCCGGGCCAGAAGTCGAACACG 104497 28 100.0 32 ............................ TGCTGACCTCTGAGACATGGGTGCTGGGTACC 104557 28 100.0 32 ............................ AGCGACTCCGCGTTTGCCGGCAGCGGCCGAAA 104617 28 100.0 32 ............................ ATATTGCGCGGATCATGTACCGCGATCTGAGG 104677 28 100.0 32 ............................ AGCACGGCGCTGGATGTCACTGTTTCCATGAA 104737 28 100.0 32 ............................ ATCACCGCCGGCTCCACGGTCGGGCCATCGAC 104797 28 100.0 32 ............................ GTCTCGACGCTGACCTCGGCCTGCCCGACGGG 104857 28 100.0 32 ............................ GCCGCGAAGCTCTACTCGCCCGGCTTGCCAGC 104917 28 100.0 32 ............................ ATGCGGGGAATACCGCCTGGGAAAACGACCAC 104977 28 100.0 32 ............................ GACCTTCTCCAGCACCAGACGGGTGCGCTCGG 105037 28 100.0 32 ............................ ACGCCGACCGGGTAGCGCCGCGTCTCAGCACG 105097 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 100.0 32 CTTCACTGCCGTGCAGGCAGCTAAGAAA # Left flank : GGCTAATTCCACGTCCATTTCGTTAGCACTGAACAAAGGCGTACCGCCGCCTCCGCAGAAGCCAACCAGTACACCGGCTTTAGCCAACTCCCGCATGGCGGCCTGGGTGATCGACGTTCCCGTTCCGAGCAGGATCGTCGTGGTGTTGGCGATGGGAATGTTCCAATAGAGCGACTTGCTGCCCTGGTCTGTGACGTATTCGACCCTCCCCCCGTTGACCAGGACACGGCAATGCTCGAGGTAGTAAATATTCGCCCGTTTTGAATGCAAGATGGTCTTCAGGTCTGAGGGGCTGATGTCCTGCACGTTTGGAGTCCTTTTGGTTTGACTTGTCATAGAGACTATTGGACGGTTTGAGTATAGGGCGAGACCCTTTTTTCTGGGGGGCGGGGAATTTCCTTAAGAATCAATATGTTGGAGATTTTTAGGAAAAATAGGTCTGGTGAGGGGGTGAGTGGGTTTTTACTTTAGAATCAATGAGTTGTGAGAGTTTTGATCTA # Right flank : TCTTGAATCGAACCGGTTTTTGAGGAGGCTCCAATTCTTGAGAAAATGGAGCCATGAGCAAGAACAACAAGTTTTCCCCTGAAGTACGTGAACGTGCGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGCAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //