Array 1 37960-38185 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHI010000009.1 Listeria seeligeri strain FSL W9-0596 NODE_9_length_127980_cov_125.689077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 37960 29 100.0 34 ............................. ATAGGTTAGGCACTATCTTAAGTACTAAGATTGA 38023 29 100.0 40 ............................. TCATTATCTAAAGTACACAAATAAATATTACCATCACTAG 38092 29 100.0 36 ............................. TTTTAACGGTGGTAGTTGTTAAGATATTACCATCTT 38157 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 4 29 100.0 37 GTTTTAATTACTCATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTACTTCAAGAGACCAGAAGTGTTTTAACTACTTTTAATCATCCCAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCGAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTCATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 44413-47170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHI010000009.1 Listeria seeligeri strain FSL W9-0596 NODE_9_length_127980_cov_125.689077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 44413 29 100.0 36 ............................. AACGCCATCATTCAAAGTCATATCCACATTTATTTT 44478 29 100.0 34 ............................. CCAATTAGTTTACTCATAGCGCCGAATGCTTGCG 44541 29 100.0 35 ............................. GCAGTTATTACGGTGGCTGGTGCGGCTTTGCTTGG 44605 29 100.0 35 ............................. ACAGCCTTTATCACAAGTTGGATGGAGCTAGCCAC 44669 29 100.0 35 ............................. ACACTTACACACCACACCAAAGTTAAATGCCGTAG 44733 29 100.0 36 ............................. CTCAATAAGCTCTCTTTCTGTGAAGGTCACTTGGTG 44798 29 100.0 36 ............................. TGTAATTACACCTCCCCAGGATTGTAGATACCTACG 44863 29 100.0 34 ............................. TTGCTTTCAGAGGTGAGAAAAAACATGCAATCAA 44926 29 100.0 37 ............................. GTGGTCAACTTAAATGATGGGACACCAGTTAAATTTC 44992 29 100.0 38 ............................. GCACAGATTAGACAGATTACCAATGCCAAAGTACAAGG 45059 29 100.0 35 ............................. TTGTTCATCTACAGCATAAACTAGGCGACAAGAAA 45123 29 100.0 37 ............................. AATCCACCGACTTTTTCACCAGCATTATTTTTGTTCA 45189 29 100.0 36 ............................. CTGGAAGAGGCGTGGCTAAAGATAGCTGAAATGAAG 45254 29 100.0 37 ............................. AGCCCAAATTGGTTATGGAAACGAGGAAGCTAAGTTC 45320 29 100.0 36 ............................. TAATGTGTCAAGAGCTGCTAGAGAGTCCGGATATTC 45385 29 100.0 37 ............................. CAGAGTACTTACTTATTCGCACATGAATTTAGCAATG 45451 29 100.0 38 ............................. TAAGCGAGTGTCCAGCGTGTTCGCTATGTCACTTAACT 45518 29 100.0 36 ............................. CATTGTAAAGCGAAATTAACTTTGTTCGATGGTGAC 45583 29 100.0 35 ............................. CGAAATACTCTTTATTTAGTCTCATTGTCCTAACT 45647 29 100.0 38 ............................. GCGATTGAAATTGTGAAAAATCGTAAATTAACGGTACG 45714 29 100.0 34 ............................. AAACCTCGAAACGAGAAAAATCGGCAACTTTGGC 45777 29 100.0 34 ............................. CTTGTTTTTCTTGGGGCATCTTTCTACTCCTTTC 45840 29 100.0 37 ............................. TTACCTCAAAGTGGCAGATGGTTTTATGGGGTATATC 45906 29 100.0 36 ............................. ACGAATTATTGGACGGCTGGCTGACCGTGATATGAC 45971 29 100.0 37 ............................. ATATGTATTCAACTATTATTCAGCAAAAGACTTGACA 46037 29 100.0 35 ............................. CAAGGTCACCAAAGTTCCATTTCGATAGGTCGGTA 46101 29 100.0 42 ............................. TGGTTACTGTCAGTAATTGAACCTGTTTAGTATCGACGACGT 46172 29 100.0 36 ............................. TCGTCCCAGCAATCATCAACAATTAGCGGATTTTCA 46237 29 100.0 33 ............................. AAGCTTAAATCTGAAACATTCCAAGAACCATCA 46299 29 100.0 36 ............................. ACACTATCTACGTGGTGTATTTCACCTCTGCGACCT 46364 29 100.0 37 ............................. AGACCAGACCAGTTCATCACAAACAGTCCGGTCGTCC 46430 29 100.0 35 ............................. TTCAATCACCTTCTTTCTTGTGTATCGACTTTATT 46494 29 100.0 36 ............................. CTAAATACGCCAGAAATGACCTGCCAGATGCCTTTT 46559 29 100.0 35 ............................. CTATGATATCTTCAAGGGCATATCTACATGTATCA 46623 29 100.0 35 ............................. ATTAGTTGTACTTCATTCATTTTCATGATAATTCC 46687 29 100.0 36 ............................. ACTAATCAGCCCTATAATGATATCCCGACGACTATC 46752 29 100.0 36 ............................. TGACATCACCCGTTAAACCCACCACAACATGTCCCC 46817 29 100.0 35 ............................. TCTGGTAAATCGTCCATGTCAAAAGGTAGGTCTAA 46881 29 100.0 37 ............................. AAGTTTTTCCGGTTTTCAGCAACGATGACTACGAAGA 46947 29 100.0 38 ............................. AACTTTTTCTGCTGCCTCATTTGTCATTTTGCACCTTC 47014 29 100.0 35 ............................. ACGACTAAATACGAATCAGCTAGGCATCAAATGAA 47078 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 47141 29 86.2 0 ........C....C..A...........G | T [47167] ========== ====== ====== ====== ============================= ========================================== ================== 43 29 99.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACAAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 55769-57799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHI010000009.1 Listeria seeligeri strain FSL W9-0596 NODE_9_length_127980_cov_125.689077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 55769 29 100.0 36 ............................. AGAAGAAATCCTTATTCCTGTCTTTTAGTTTTCTTC 55834 29 100.0 35 ............................. TGTCTACCAACTCCAAGAAAGTACACCCGTCTTCC 55898 29 100.0 36 ............................. GAAATTAAGACAACAATAGCAGTAGAAGTTATATCT 55963 29 100.0 36 ............................. AAAACAGAGCCTCCGCCGTCCCAGCCGGTAAGAAGA 56028 29 100.0 34 ............................. TTGCTTTCGGCAGGTACAAAAGCACTATCGAACG 56091 29 100.0 35 ............................. ACTAAAATTGGTGCGACAATTAATGAGAAAATCGC 56155 29 100.0 38 ............................. AGAAAAGATATTTTATGTATTGATGTGAAGTCCTTTTT 56222 29 100.0 36 ............................. TGCTCTCTCAAGTCGTCAGCAACCATCACGATGTCA 56287 29 100.0 35 ............................. TAACCACCTTGTTCAGCATAACGCCCCTGATGATA 56351 29 100.0 36 ............................. ATTCCATGGAGGATGCTCCTGATGGTAAATATTCAC 56416 29 100.0 36 ............................. AGTTGTATACTTATCGTAAACGGCTTTTGGTTTTAG 56481 29 100.0 35 ............................. TCATTTGATGTCGCCAAGCTATTACCTTCAATTAC 56545 29 100.0 34 ............................. TTTGTTTGGGGGCGGAGCGGCTCTTATTCGCTTG 56608 29 100.0 34 ............................. ATCATCACCCGTGAATGATATAACCGCTAACTCA 56671 29 100.0 36 ............................. ATCATTGCGCGTCCGAAAGGGCTAGAAGTGTCAAGC 56736 29 100.0 36 ............................. ATATGCACCACTGTCGTATTGACGTGATGTTTTCTT 56801 29 100.0 35 ............................. TTATTCCCGTTATTTGATGCCGCGGCACAATATTC 56865 29 100.0 35 ............................. CAACTAATCGAAGCGGCTATAACGATTGTCATGGC 56929 29 100.0 36 ............................. ATCACAAATGGAGCGGCTAACAAGGTCTTAAAAGAA 56994 29 100.0 36 ............................. GTTATTGAAAAGAATATGCAAATATATATAAATAAT 57059 29 100.0 35 ............................. TTTTCACTTGCATATTTTGATAAGATGTTTTCTTC 57123 29 96.6 34 .......C..................... ACCATCCCGTCTGCTGTAAAATATATTCAAGCGC 57186 29 96.6 37 .......C..................... CATGGTATATTTATCATATACTGCCTTAGGTTTTAAT 57252 29 96.6 35 .......C..................... CTCCGTATACTTTCAAATAGAATTTACTAAGTTGA 57316 29 96.6 36 .......C..................... AAAAACACGCGCGATCTGACACCGCTTTGCAACTTC 57381 29 96.6 37 .......C..................... AATTTTTCGATGGTGTCTAAGCCGTCGACCACAATAC 57447 29 96.6 35 .......C..................... AATATGCACCAAATGAGCTATTGCAAATCATGGAT 57511 29 100.0 36 ............................. ACCGGTATTTTCATAGATTTAAGTTTCGCTGGATCA 57576 29 96.6 36 .......C..................... AAAAAAGAAATGCGCAAATGGTTTATGCACGTTATC 57641 29 96.6 36 .......G..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 57706 29 82.8 36 ..A....C....C........TC...... GTGGTCAAAGCCTTCTTATTGCCAGCAGGTGAGCCC 57771 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 32 29 97.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //