Array 1 688-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEZ01000024.1 Salmonella enterica subsp. enterica serovar Blockley strain 79-1229 NODE_24_length_51927_cov_2.38607, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 687 29 100.0 32 ............................. GAGTTTCATAAATAATAAAGCCCCGTCTTTTA 626 29 100.0 32 ............................. CTCGGGTTCGGTTTATACAAGGAAGATCAGAC 565 29 100.0 32 ............................. TTACCTGCACTGCGCCAGCGATTTTCTATTAA 504 29 100.0 32 ............................. ACTTATTCGACGGGAAAAGCATTGATGTTACT 443 29 100.0 32 ............................. GAGCCAGCCCTGCCAGCTTTAACATGCGCTGA 382 29 100.0 32 ............................. CTGCCCGTCTCGTTGTTAATCGGGTTACCGTA 321 29 100.0 32 ............................. ATCTGGCTGTACTGGCTGGCGGTGATTTCCTC 260 29 100.0 32 ............................. CCCGCCCAATATCATTCCCATTCGGGTACAAC 199 29 96.6 32 ...............T............. ACATGCGCGAGGGTGAGCGCCTTTGCCGCACT 138 29 100.0 32 ............................. GCACGGATATGGTTGACTGCATTTCGCTGAAC 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GGATGCGATCAGGCTGGCGATCAAGCAGATGTCGTATTCCCCGCGCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39-1103 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEZ01000015.1 Salmonella enterica subsp. enterica serovar Blockley strain 79-1229 NODE_15_length_126119_cov_2.41633, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39 29 96.6 32 ..A.......................... ACGTTCGGCCATTTTCCCGAACGCCGTAAAAC 100 29 96.6 32 ..A.......................... GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 161 29 96.6 32 ..A.......................... TCGTATCCCTGCAGCTCCAGCGACCCTTCCCT 222 29 96.6 32 ..A.......................... GCAGGGTTTTACGGCTCCACGTGTTTTTTACG 283 29 100.0 32 ............................. CGAGAGATCATAGACCAATGGACTGAAAGACT 344 29 100.0 32 ............................. AATTGATCACAATCCTGTATAAGCTGCGCAAA 405 29 100.0 32 ............................. AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 466 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 527 29 100.0 32 ............................. AGTACGAGGCACTATTCGGCAAGAAACCGCAC 588 29 100.0 32 ............................. GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 649 29 96.6 32 ........................C.... GATTGTTCAGATTGGGAATTTGACCAACGCCC 710 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 771 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 832 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 893 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 954 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 1015 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 1076 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGGATGCGATCAGGCTGGCGATCAAGCAGATGTCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17374-18258 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEZ01000015.1 Salmonella enterica subsp. enterica serovar Blockley strain 79-1229 NODE_15_length_126119_cov_2.41633, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17374 29 79.3 32 ......................ACGTGT. GATCTTTTTCCTCCTCAAATCGTGGGGAATGG 17435 29 100.0 32 ............................. TGAATCGCGAGATGGGTTTTATGATGCGGATC 17496 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 17557 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 17619 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 17680 29 100.0 32 ............................. GCTCTTTCTCCGTTAGTGTGAATTTCGTCTTC 17741 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 17802 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 17863 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 17924 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 17985 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 18046 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 18107 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 18168 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 18229 29 93.1 0 ............TC............... | A [18256] ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //