Array 1 4-1557 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXE01000072.1 Salmonella enterica subsp. salamae serovar 58:l,z13,z28:z6 str. 00-0163 SES60163_6000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ............................. AGATTTATCAACCTCTGCATAGGTTTCCAACA 65 29 100.0 32 ............................. AGATTTATCAACCTCTGCATAGGTTTCCAACA 126 29 100.0 32 ............................. AATGCTCATCGATGTGGTGCCAGTCACTTAGA 187 29 100.0 32 ............................. GCTGCCGGAGAAATAGGGGGCTGGCAGAATGT 248 29 100.0 32 ............................. ACCGCGCCAGTCAGGGAAACGTTAAATTACCG 309 29 100.0 32 ............................. ATACAACGATTAAACATCCAATTATGCGCTAT 370 29 100.0 32 ............................. ACAAAGTTTTACCGCCAGCACATTATCGCCGT 431 29 100.0 32 ............................. ATATCCGCTTCCATGTCGATTGCCAGTTGGAC 492 29 100.0 32 ............................. AGGCATTCCGCATCCGTAGCATTGTTTCAGGT 553 29 100.0 32 ............................. TAAATATGAGTTTCACCCCGCAACTGGAGGCT 614 29 100.0 32 ............................. CTGATCCACGTCGCCCGCCGCGAGGCCGGGCT 675 29 100.0 32 ............................. GGGTCGGCGTCTGTGAAATCCTGTGGAATACC 736 29 100.0 32 ............................. AATTCCGCAACATGCAGGACCACTACAGCGAT 797 29 100.0 32 ............................. GAGGTTCCAGTCGAAAAAGTTGTCAGCGACAT 858 29 100.0 32 ............................. GACGAATGCCGCGACCGCCGCCGCGATTGCCA 919 29 100.0 32 ............................. GCATTCCAAACCCTTTGGAGTCAGTATGGCGT 980 29 100.0 32 ............................. AGGATATTGCTAGTCGTTTTGATGAGGCTGAC 1041 29 100.0 32 ............................. CCGCTCTCATTTTTTCCTGAATTTCAGCAGCA 1102 29 100.0 32 ............................. TTGGTGTACCTGCCCGAATTCAATCGCGCAAT 1163 29 100.0 32 ............................. GTGATGATTCAGGAAAACAAACTGCCTGTAGT 1224 29 100.0 32 ............................. GGTTGGTAACAGGTTGGGTTGCGTATTAGAAA 1285 29 100.0 32 ............................. TTGATATGACTTTATCTAGATCGCGATTCTGA 1346 29 100.0 32 ............................. GCTGGTTTTAACCCACTGCTAGTAAAACGATA 1407 29 100.0 32 ............................. TGGCGCGCCAATCCGCCTTCGGTGCGTATCAC 1468 29 96.6 32 ............T................ AATACGCAAAGCTGATTTTGTCGAACAGTGCG 1529 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACAG # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAATGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 764-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXE01000040.1 Salmonella enterica subsp. salamae serovar 58:l,z13,z28:z6 str. 00-0163 SES60163_22000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 763 29 100.0 32 ............................. CTATATGATCGTTAGGTATTTTATTTAATATT 702 29 100.0 32 ............................. ATGCAATAAATTACTTTGGCAGTAAGACCAAA 641 29 100.0 32 ............................. CATCAGTTGGGAGGCGGCTTTCAGTTCCTGGG 580 29 100.0 32 ............................. ATCCGAACGCAGACCCTGAGACGGATTTCACC 519 29 100.0 32 ............................. TGGGCGCGGCTTAGCCTGGTATTCACTTCCAC 458 29 100.0 32 ............................. AAAACGGTGGGACCATCTATGTACGCTAATGG 397 29 100.0 32 ............................. TTTGCTGAGAGACTCCAGTTGCGTTTCTGGTG 336 29 100.0 32 ............................. AAAAATATTTCAGAAGAAATTTCATTACCTAA 275 29 100.0 32 ............................. GTGTGCCGGTACCGTCACCTGTGAGTCTGCCA 214 29 100.0 32 ............................. ATACTCACCTTCACCTATGTACTGAGCAAGAA 153 29 100.0 32 ............................. CTCCACCTCAGCAGGCCAGACGGTTTCCGGAA 92 29 100.0 32 ............................. CGTCCTTAATGGCTGCCATCGTGTCAGGTACA 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAGTAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : GGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18946-18063 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXE01000040.1 Salmonella enterica subsp. salamae serovar 58:l,z13,z28:z6 str. 00-0163 SES60163_22000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18945 29 100.0 32 ............................. CCGGCCTATAACTTTGGCGGCCTGTCACTGGT 18884 29 100.0 32 ............................. ACCCGTATGGTCGGTGGTATCTGGCAATTGCG 18823 29 96.6 32 ............................A GCTTCAGAGCGGGCATTATGTCGCTGGTGTGG 18762 29 100.0 32 ............................. GGACGCTGGCATATACCAGCACCATGACATAG 18701 29 100.0 32 ............................. GCGGTGCGGCATGAGCAATACATTTTTTATCA 18640 29 100.0 32 ............................. GCGCGTACTTTCTCAACGTCTGCCCGGCTCAT 18579 29 100.0 32 ............................. CCGCCACGTTTGAAATCACTCAGGGCGGGAAA 18518 29 100.0 32 ............................. GCGCTGGGTCGTTTCCACCAGCTCAACGCTGA 18457 29 100.0 32 ............................. GTAACGTTGCCGTTCTCTACGATATTGACCTG 18396 29 100.0 32 ............................. CCGATTCACCAGTTCACGCTCTCGATCATGCA 18335 29 100.0 32 ............................. CTTTCCGGTAGAGCGGAATTGAGAATGCTTCA 18274 29 100.0 33 ............................. CTGGGTCTTGGTTTCGACGTTGTAGCGAATAGC 18212 29 100.0 32 ............................. AATGGCGGAAATAGACGCACGCGGACCCGGTA 18151 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 18090 28 86.2 0 ....C........C..........G-... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAATTAGTTTATAAACAATGATATACATTTAGA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTCATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //