Array 1 437-67 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRMW01000034.1 Anaerococcus lactolyticus S7-1-13 contig34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 436 33 97.0 33 G................................ TGCAAGCCTTTATATAATTCATCCAATAGCTTT 370 33 100.0 34 ................................. ATTATTTCTTCAAGCCTTTCAGCCCTTATGTCTA 303 33 97.0 34 T................................ ATATTTTCTTTTAAAGTTATAATTTGTTACCGCT 236 33 97.0 35 T................................ TAATGTGGAAGTGCTTATATTACCATCAGCATCTT 168 33 100.0 36 ................................. CAAATCATTTATAAAATTTTCTAACCTGCAATCAAT 99 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 98.0 35 CGTCGCCTCCCATACGGAGGCGTGGATTGAAAT # Left flank : CATATACAGGCTCAACTATTAAATTCTTATATAAGAGGAGATATACCTTCATACCCACCATATATGCAGAAGGACTAAATATGTATGTAATAATTACTTATGATGTAGAAACGAAGTCTAAAAGTGGAAATAAAAGACTAAGGGATGTTGCAAAAATATGTAAAAATTATGGACAAAGAGTTCAAAATTCAGTATTTGAATTACAAATTTATCCAGCAGATTTAATACAAATAAAAAATAAATTAGAGGAAGCGATAGATAAGGAGAGAGATTCAATAAGAATATATAATTTAGGAAAAAATTGGGAAAGGAGGGTAGAAACATTAGGAAAAGATGAATCTTATAATCCATCAAGTGATTTATTGCTGCTATAGGATGAGATGCCTAGTTAAACATAAAATTATATAAAATAGCTCAAAGTATTGGGCGCATTAAAGAGACAAAACTCATAATAAATGACTAAAATGCAGAAAAAAGAATAATAAATATTAAAAATCTGC # Right flank : TTGGGGGTCTCGATGCTTACCTTATCTGGCTTTGTGGGTCGCCTCCCATACGGCGTGGATTGATTTT # Questionable array : NO Score: 8.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCCTCCCATACGGAGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 120616-119840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRMW01000033.1 Anaerococcus lactolyticus S7-1-13 contig33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 120615 33 100.0 32 ................................. AATTCATCAGCAAGAGCATGCTCATTAATATT 120550 33 97.0 36 C................................ TTAATTTCATAGTGAAATCTTTTTTTGGTATCTCTA 120481 33 100.0 34 ................................. CCTATAGGGTATAGGTGTTTTTACCGATAGGGTA 120414 33 100.0 34 ................................. TCATACTCAACAAGTGATCTCATCTGACGATCAA 120347 33 97.0 35 G................................ ACCAAGGATCTTAAAGAGATAACAGAAATTGTAAA 120279 33 97.0 35 C................................ GCTAGTGGTGGAAATGAAGTTATTGGTGCTGATAC 120211 33 100.0 36 ................................. AAATTCGGAAATATCTTTCAATTCATCTTCGGAATA 120142 33 97.0 37 C................................ TACAGCATAAGACACAAAGAATTAAAAAGAATGGTTA 120072 33 97.0 33 G................................ GTCCCAACGGTTTAAAAATTCATCGTGTTTTTT 120006 33 97.0 34 A................................ ACTATATCCATTATAACCTATATTTCGGGCAATG 119939 33 97.0 34 G................................ TTTTAGGGAGTCAGAAAGTAGGTATCTACCATTT 119872 33 97.0 0 ...T............................. | ========== ====== ====== ====== ================================= ===================================== ================== 12 33 98.0 35 TGTCGCCTCCCATACGGAGGCGTGGATTGAAAT # Left flank : TTTGGTATCTCT # Right flank : AGTATTATGAATTAAATAATCATAAGTAGCACGAAGTCATCACTAACATACATGAGTAGATTAAAACAAGTAAATGGAAATTTGCTCAATGTTACTAAAGTGCTGATTTCGAATTAGGAGAGAAATTAAATCACTAAATACTAAATGAATTTATATTAAAACTTTCGATTGTTATCTAAACATGATTTAGTATCGTAATAAATAAAAAATCGTCCGGGGAATTAGATTACTTAAAGTAAGTTATCTATCTCTTGGACGATTTTTTTGACTAATCTTCTTTATTTTCTTTTAGACTAAATTCTAACAAAACTGGGTTGTGGTCGCTGTTTACGAAGCCTATGGCTTGGCCTTTTACGGATTTTACTTCTACGTTATCTGATACTAAAAATCCGTCTATTATGCATTCGTATGAGTCGTTTGGATCGTATGGTTTGTGGTTTAGTCTTGATGAGTTGGTGTTTTCATCAAATGTAGGTTTGATATTATCGGTTAGGTAGTCA # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGCCTCCCATACGGAGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //