Array 1 11532-11753 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAO01000002.1 Clostridium tetani strain 778.17 contig_0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 11532 28 100.0 37 ............................ GCCCTAACGATGCAAATGCTAATGCTATGAATGATGG 11597 28 100.0 36 ............................ GCCGCAGAATAAATGAACACTTATTTCGTGCATCGT 11661 28 96.4 37 ....G....................... GCTTAATTGTCCAAATGATTTACCACTCATTTTTCTT 11726 28 85.7 0 ............T..AA........A.. | ========== ====== ====== ====== ============================ ===================================== ================== 4 28 95.5 37 GTTAAGCTTTAACATGGGTTAAATAGAA # Left flank : TAGCAAATATCAGCTTGTACAAGGCTACCTTGTTATATTTATTTTATAGTTAAATCCCCTTATAATAAATTTACTTTCTGCAATAGAATAAAAGAGCCAGGACTAGTTCTTAAAAGAATTTGCCCTGGTGGCTACTTATTTTTATAATTTACTATTGTTACACTAGCTTATATCCATACTCATAATGGACTTCCCAAAATAAAGAATATATACTTGTCCAATACTTCTACTTTAATTAAATATATAATATTTTCATTTGTATTATTATCCTTATATCTATACATAAAATAATAGTATATACATAAAATATAAAAACAGGTTGACTTCCCAACCTAAGATTGAGAAGTAAGATATGAAACCTATTGATTTTCAATAGGTTAAGCATCCTAAACTCTCAATAAGCCCACCAATCATAAACGGCTGGTAACATTCTATAGGTTTGCTTGATATAGCGGGGTTTATAGATATTTGACCTAATTGAGAATGCCTATTTTACAGTG # Right flank : AATGAAAATATAAACCATAATGAGGTATATGGAAATTCTGGGAGATTACCCCCAGAATTTTTACTTTACCAACCTCCCCCAAGTATCCCTTCCTATAATTCCATCTACCATAAGGCCATTATCTCTTTGAAATTTTTTAATAGCATTTAAAGTAGCATTACCAAAATATCCATCAGCTCCATAGGAACCAATACTATATCCCTTTTCCATTAACTTTTCTTGAATAATTCTTACATTATTATCTTTTAAATTAGCATTAACTTTAATTAAATAACCAGGATAATCTATAACCTTATTTTTATAAAATTCTAATCTTGTTTCTCTTCTTATTTCATCTATTGGATAATTAGTTCCTGGACAATTAGTTGAATTAAGTTCTCCATGGCCATAAATTTCTTTTATGCCATATTTGCCACATAAATATTTAATAAGCTCTATTAAAGAATTTTTTTGAGCCAATGGCATATGCTCCACCATATAATTTCCTTCTACACATATTC # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCTTTAACATGGGTTAAATAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 137467-137692 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAO01000017.1 Clostridium tetani strain 778.17 contig_0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 137467 30 100.0 36 .............................. GCCCTGTTTTTTTATTAAGCAAAAAACCTTCATCAA 137533 30 100.0 34 .............................. TCGTTTTTATTGCCTATTTTTATAAATTTATGGT 137597 30 100.0 36 .............................. TTTTCCATACTTTTTTGGTTACTTTTTTTATAACCT 137663 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 99.2 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : AAGTTCAGAGGAAACAGTAATTAATGGTGAGAAAGTATATGTAGATGGTGATAATATTTTTAAATTACCAATTAGTGAAGAGGATTTTTGTAAATCTCTATACTTTAATAGTATAGTAGTAAGAATAGAAGAAGATATGGAGATAATGGATTCAAGAATAATGATAGAAGCTTTTATAGATACAAATCCAGATTATTTTGCAGGTCATTCAATGGAAGTTACAATAACAGATAATTATAAAATATCAGTTGATGGATTGGCGGGTTAATATATAATATGTTATGTGTATGGGATATAAATATATTAAATTAAAAATTATAAACTTTCCCAGGTGATTTTAAATAGGAATATAGTTTAAGGTATTGATTTGTAAGGATTTATGTGCTATTCTTTAATGTGATTTTTCAAAAGCTAAATCACCTGGGAAATTTTTAGAGAAATGTTGAAATATCAATGGGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATATACATTAAAAAACCTTAGCCATGTCGTTTAAACCCATGATTATTCTGTTTAAACATCTTATTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATATTTGTTAGAGAAAAGACTAAATCATATGAAAGAATACTTGCCTATAAAAATAAGTTTTGAAGCTATAGATACAGAGGGATATAGTAAAGTTGAAAAATTTTTAATTAGTATAATGATGCAAATAGTGAACTATTTTAGATTTTCAACCAATAAAGAAATGTATAAATTCATAAAAAATCGTGAAAATCAAATTACTAATATGAATGATTTTAATAGTTTTATAACAGATTTAGTTGAGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 139667-140092 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAO01000017.1 Clostridium tetani strain 778.17 contig_0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 139667 30 100.0 36 .............................. GACATATAAGACAACTCTTTGGAAGCATGTGTTAAT 139733 30 100.0 36 .............................. AGATGTAATATTATATAAACTAGCATGTGGAATTGG 139799 30 100.0 36 .............................. TTTAAAAAATTATATAGAATGTTGTATGATGCGAAC 139865 30 100.0 35 .............................. GAAACTACTTTTTACAGAGAGAAAAAAGAAAGAAA 139930 30 100.0 36 .............................. GATTTTATAAATAGCACTACTACATCCACTATAGAG 139996 30 100.0 37 .............................. AGGATTATTGGCAATACTAGTTATAATAGGAGATATC 140063 29 86.7 0 ...A............T.-..........A | T [140077] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.1 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAATGTATATACTAGAACTTAAAATATGGAGAGGAGAAGAATATCACAAAAAAGGACTAAAACAGCTTGGAGAATACTTAAATCAGTACGGATTAGAAGAAGGTTATCTTTTAATATTTGATTTTAGAAAAGCTACAAATTTAATAGGTAAAACTAAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGAGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAAAAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGAAGTATAGCTTAGAGTGATGATTTATAAGGGCTTACATACTATTTTTAAATGTAATTTTTCAAAAGTTAAATCGCATGGTAAATTTTTAGACAAATATTGAAGTATCAATGGTTTTATGGTATTCTTAATTTTAATAAACCTTGATTTTACAGTG # Right flank : AATAGTTTAAATTGTAATAGTATACTTAACCATAACATGAGATGTTTAATAAAATAATATTATGGAAAAGAGATTTATATTTTAGATCTAATTATTAAATTCAATAGTATAAATTGTAATACTTTTAGAAATAATATATGTATAATCACAATAAAATAAATATAAAAAATAATGTTAATGTACTATTATGGAAACAAAAGGATGGATAAAAATGAAGAAAAAATTAAAATTCTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGAAAGGATAGAAATTGATGATATCATTTATATAATTGAATTAGTTTTAGTTATTACATTAATTTTAAAAATCTTTCAATTCATAAATTAAAAGATCTACTTTCTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAATATAAAATATTATAGTAAAATATATATTATAATGAAGATATAAGGAGGTGAAAAAGTGAAAATATATGAATTAACATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 149394-150466 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAO01000017.1 Clostridium tetani strain 778.17 contig_0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 149394 30 100.0 35 .............................. AAAATAAGACCAATGAATATAGGTCAGGCATCCAG 149459 30 100.0 36 .............................. ATTTTTTGGGCAATTTACAAAGGGAATGAATTATAG 149525 30 100.0 35 .............................. TAATCTGGACTTCCTATAGACACATAAGTATCTTG 149590 30 100.0 35 .............................. CTGGCTCTCTTATTATTTGCTTGCCACTAATAGGG 149655 30 100.0 37 .............................. GCATACACCAATATGTAATCTCCGCTTTCGTCTTTAA 149722 30 100.0 34 .............................. CTGTTTAAATCTTCTTTTTTATTTTGTTTATTAT 149786 30 100.0 34 .............................. TTCTCTATAACATCCAACACATTTAATGTATCAG 149850 30 100.0 36 .............................. TTTTTAAAAACCTATTCTATTTTAAAAGTTATGCTT 149916 30 100.0 35 .............................. ACAACTTTATCATTAGAGGTTATGTTTAGTAAAAC 149981 30 100.0 33 .............................. GAGTTGATAGGATATTTGGACATTTACAGGATG 150044 30 100.0 35 .............................. GTGTTTTTAGCTATTGCTCTATAATTACTTATTAA 150109 30 100.0 36 .............................. TTTCTTCTCCTATTTGTTCTTTTACTTTGAAATCTA 150175 30 100.0 36 .............................. CCAACGTCTTCTCCGAACAGTGTTTTACCTTCAAAA 150241 30 100.0 34 .............................. ATAGGCGAGCAAGCTTTAGAAATAACAGGGGATA 150305 30 100.0 35 .............................. TCTATTAACCCCATCTCCATTCGAATACATCTTCT 150370 30 100.0 37 .............................. GATACTAGAATAAGAATTAATGGAAAGCAGAAAAGGG 150437 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.8 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAGATGAGTAAAAATTTTAATTATAATTATGCATTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAATAGAGTGTTCAAAACCTGTAAAAAGTATTTGTCACATTTTCAAAAATCTGTATTTAGGGGAGAACTTACACCAGCAAATTTTATATTATTAAAAAAAGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCACACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGATTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGCTAAATCACCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGGGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGGGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 152588-153528 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAO01000017.1 Clostridium tetani strain 778.17 contig_0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 152588 30 100.0 34 .............................. TTAATACATTCTTACTAATTTCAATGGTATGTCC 152652 30 100.0 35 .............................. TAAAATTCTCTTTCGTCTTCAAATTCTTCCGAAAA 152717 30 100.0 35 .............................. GAATCTTTACCAAAGCTTTTTATACCTTGGCTTGC 152782 30 100.0 35 .............................. TCAAACCTTATTCCAGCTATTTTCTGATTGCCATG 152847 30 100.0 36 .............................. AGAATACTATCTGAAAAACTATCATAAATGGGATAT 152913 30 100.0 35 .............................. CTGTACGGATGTTCAACATCGCCTGTCGCTTTAAA 152978 30 100.0 36 .............................. GAAAAAATAACAGAGTTTAACATAGTTAGAGCGGAA 153044 30 100.0 34 .............................. GATAACTATGTTCGACACTGAGGGAGCAAGCCAG 153108 30 100.0 35 .............................. TCTGTTAAAGTATCGAAATCTATTCCAAATATATC 153173 30 100.0 34 .............................. TTTGGTACTGTAATTATTACTAATCAAACTGGAT 153237 30 100.0 37 .............................. GCGTTTAAAGTTCCCCACTTTTACCTATTAAATTTAT 153304 30 100.0 35 .............................. TTTTATCCTCTCCTATGTTTTATTTCCCTTAGCCA 153369 30 100.0 35 .............................. CCTACAGAAGGGAAGTGTTTTATCTTGTTTCCTAG 153434 30 96.7 35 .................A............ TTTTTTATGTCTACGGGTATGGTGGGTATAAAAGA 153499 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.8 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : AAGTGGAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGGGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCCATAAAGCTTAGAAATCGTTATCCAGGGACTTAGCTACTCTTTACTCCCGCTTTAAAGAAAATGGAAGTATTAGAGCTTATCGTCATCGGATAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAAAAATAAGTATATACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGAAAATATAGCTTAGAGTCTTGATTTATAAGGGTTTACATACTATTTTTAAATGTGATTTTTCAAAAGTTAAATCACCTGGTAAATTTTCAGGAAAATGTTGAAGTATCAATGGGTTTATGGTATTCTTAATTTTAAGAAACTTTCATTTTACAGTG # Right flank : TTATTTACCTTTAAATAGATCCTCAACATAGGATGTATTTAAATTAAGTATTTTTCTTTTTAGCGGATTACGTAGATAGCATATAAATGCTCTTAATAGCAATCTAAGGAAATATATGGTGTAATGGCGTTGTTATAAATTTGAAGGAGTGATATTTCATGAGTATTTTAACAAGTTGTATTATTGGACTTGCTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGGAGCATATAAATAATAGTCTTGGATATAGAACACCATTTGCTATGAAAAATAAAGACACATGGTATGAGGGGAATCGTTTCTGCGGGACAATGCTTTTAATAAGCGGTATTATTTTTATACCATTTTCAATATTAATAAGATATTTATATAGCAATAATTTAACTTTATCAATGAGAATATCGTTATTGGGCTTGTTTATTATTATAATGATAGGTATTGTATACACCGAAATACATTTAAGAATGATATTTGATAAGAATGGAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 157708-158515 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAO01000017.1 Clostridium tetani strain 778.17 contig_0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 157708 30 100.0 34 .............................. ATTTCTTGACTAATTCTTTCCGATAAATTTCTAT 157772 30 100.0 35 .............................. ATGTTCCCATATGACTTTATTTCTTTGGATTATGA 157837 30 100.0 37 .............................. AAAGCAAGTGAGATATTAAACCAACAGTTAGAATTAA 157904 30 100.0 34 .............................. TAGATGTTAGGGTTGATAAAGAAGAATTAATTGA 157968 30 100.0 37 .............................. GGAGTATATTTAGACGCATTCGAAGATACCGTTGAGG 158035 30 100.0 32 .............................. TAAGTACAGTTTTAATGTTTTTATTAAAACTT 158097 30 100.0 35 .............................. TTAATTTTGACAAATCTACCATTTGTATCTCTTAA 158162 30 100.0 34 .............................. ACTTCTTGCTTATCCTTCCACCCAAAGTTGTTTT 158226 30 100.0 35 .............................. CTTAAAACTAAAGAGATTATAGAAAAAGATTTCGA 158291 30 100.0 34 .............................. GAATATGCTTTTAAAAAATTTAGTTTATTCGAGG 158355 30 100.0 37 .............................. TCTAATGCTTCCCCGTTAGATCTGTAATATGTCTTAT 158422 30 100.0 34 .............................. AGCTAAAGCCAAACTGTTTTGTTGAATTAATTCT 158486 29 90.0 0 ................-.A...T....... | T [158500] ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.2 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : GTATGTAGTGGATATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAAGCAGTAATAATACCTATGGAAGATGGTAGAGTAAAGGTGAACTTTAATGAAAAGCAAAGAGCTATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAGTAGGCGGAGGAATAATTGAATAAATTTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTATATGCTTTAAAGTATTGATTTAACAGGGGTTGATTAATGTTTTAAATTAGTATTTTAAAAAAGCTAAATCACCTGGTAAATTTTAAAGGAATGTTGAAATATCAATGGGTTTGTGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TAAATCATTTTGAGAATATAAATTTATAATGTGACTATAAAATTTTAGACCTAAAATAAAAGAAATGGTGAAATGTTTTGGTTATACCCTCAACTACATATATGAGAATAGTCTCTTCCTCTCCATTAACATATAATATTTGTCCAGATAGTGAGTAATTTTTAAATTTTTATGCATGTTTATATAAAATAGAGTATTACTTTCTTAGGAAAAATAAACTTTATAAAATAATTATATTTTATATTTATCGGTGTTTTATTATATGAGAGCATTGCTAAATGTATTTTATATCTATTTATAATAATTGGTATTTAGCCAATCATAAATATAGGCCTTCGCTCTCATATGCCACACTCTCACTGTATTTGATTTAACCTTTAATGAAGCTGCGATTTCATTAAAGGTTAAATTATTGTAATATCTTAATATAATAACCTGTTGATATTTCCAGTTTAATTGATTAATAGCACTTTTTACATGTGTAATTAGTTCTTCTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 160576-160801 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAO01000017.1 Clostridium tetani strain 778.17 contig_0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 160576 29 100.0 35 ............................. TATAATTGTTTTTCTTAATTTGCTTTTCCCACCCA 160640 29 100.0 37 ............................. TAACCGTTGCAAACAGGTAACTTGCAATTATTCTAAC 160706 29 100.0 37 ............................. TGAATGTGCTATTCCGACTGTATAATCGTTTTTAAGT 160772 29 75.9 0 A..........GG.T.CC..C........ | A [160795] ========== ====== ====== ====== ============================= ===================================== ================== 4 29 94.0 37 GTTGAACAATAACAAGAGTTGTATTTAAA # Left flank : TACTATTGGACTCTAAAAAAGACGATGAAATAACGATAATTAATAACTCTAAAATAGATGAGGGCAAATTCTATATTGGAGTTTTAAATTCTGAGAATGAGATTATTGCTTTTGATAAAGAAAAGCAAGACAAAATAACATTTGTAACTCCTGAAGAAGGATGCTATCTTATTAGGATTTTAGCTAAAAACTCTAGTGGAAAATGTGATGTGAAAGTAGATTCTAAAAAAGACATAAATCTTAATTACAATTCTATTAATGGGCATAATATAGGTTTACTAGAGAAAAATAATTGAATAAATTTTATATATAAAGTAATATTATTTACCACGTGATTTTAGTTGATTACATGCTTTGAAGCATTGATTTAACAGGGATTGATTAATATTTTGATGGAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTAAAGGAAATGTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AGCTTCTTTTTTTACCCCATATATATTTTTTTTATCACTTAAGTAAGCAAAATCTTTACCTCTAATTGTTTTTTTATATTATATTTAAATGTATTTAATTAAGCATAACTATTAAAAGACAGGAAGTAGAAAAATGTGATACTTAAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTATTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTCACAAAAGTACAGGAAAAGCTTACTGACT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 7 176689-177236 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAO01000017.1 Clostridium tetani strain 778.17 contig_0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 176689 30 100.0 34 .............................. GTTCTTAATAAGTTTAATCGCGACAATATAACTC 176753 30 100.0 35 .............................. ATACATAGCTACAGGTGTTACACCGCGTGAGATGG 176818 30 100.0 34 .............................. GAGTATTTTGGTTCAGTTGCTAAGGCATACAGAG 176882 30 100.0 34 .............................. TTTTCTTCCAAATCTAAAAACTCTCCTAAAACCC 176946 30 100.0 35 .............................. TATTAATTCCTCCTAATTATAAAGTATAAATCCAT 177011 30 100.0 34 .............................. AAACTGTTTTTAATTTTATTTATTTTTATAATAC 177075 30 96.7 37 ................A............. TTTCCTTATCCCAATGGGTATATCCGTTTGCATCTAC 177142 30 100.0 34 .............................. TTATAAATCCTGTATGTATTGATATTTATAAGTT 177206 29 83.3 0 .......T................CCC..- | GC [177230] Deletion [177235] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.8 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AGGCGGACTTGTAACTGTTATGGTTAGAGGAGATGTTGGAGCTGTTAAGGCTGCTACAGATGCTGGAGCTGCTGCTGCACAACGTGTTGGAGAATTAGTATCAGTTCATGTTATACCACGTCCACATTCTGAAGTTGAAGTAATTCTTCCATCAGCTAAAGAAACTGCAAAATAATATTTTAATTATAGTGTAAAGTAAAAAACGTCGCTAAAATTTTTAGTGACGTTTTTATTTTTAAAAATATAATGGTTAATGAAATAAGTATTTAAATATGCAGAGCCTTTTAAATTATATAGAATTATTGATATAATTAACATATGAATTTTACCAGCCGAAAAGAATTTTAAAATTTAGCTTAATCGTTGATATATAAGAGTTTAAGGTAGGTTTTTATATAATTTATAAAATTTTAAAATCACCTGGTAAATTTTCAATGAAACCTTGAAATATCAATATGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATTTTTTCCAAACATCTTATTCTATGGTAATATAATAGGGTAAGGAGAGTGAAAGTTATATGAAAAAGAGATTTAATGTAACTGGAACTTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGACAGTATGGGAAAACCACTACTTTATATTTGTTAGAGAAAAGACTAAATCATATTTAGTTGAGTTTTCACAAAAAAAAGTAGTTTTAATAATAGATGAAGTTGATAAAAGTAGTAATAATCAACTTTTTTTAGATTTTTTAGGGATGTTAAGAAGTAAATATTTATTAAGAAATGAAGGAAGAGATTATACTTTAAGCGTTACTAGCTCCCATTAAGATATCATTAAAATATCCTGCCTAATTATTAGGCAGGATAAAAATTTGTTATTGTAGCTTTTAAAGTCCCATTTCCACTATTAATATATATATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 8 179696-180114 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAO01000017.1 Clostridium tetani strain 778.17 contig_0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 179696 30 100.0 35 .............................. TTACCTGAATGGAACATAATATTCCCAAAAAACAA 179761 30 100.0 34 .............................. TTTAAAGCTATATGGGAAAACTTGGGGCAATTTA 179825 30 100.0 35 .............................. AATATAGCTTTAGCAATTTCTTCATCCTTGCCACC 179890 30 100.0 34 .............................. CAGGTGAGAACCGTTTAGATTTAGGGCAAAACTT 179954 30 100.0 37 .............................. TTAAAGACGAAAGCGGAGATTACATATTGGTGTATGC 180021 30 100.0 33 .............................. TAACCTCGGTTAGCTTATTGTGTTTTACAATGT 180084 29 86.7 0 ........................CCC..- | GC [180108] Deletion [180113] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.1 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TAGTGCAATTTTAATTTAATATCGAACCACCTTAAATTAATGTCCGAAAACCTTCTAGATAAACAACGGAAGTTTTCAGGCATTTACTAAAAATATAATATTTTAGATGCAGAGGACAATTTAGTTTTAATGCTTGAGGGGAATTTTAAAATAGTTTATTCGATGATTACCTGCTCTATCTTTAAAGTGGGAGTAAAGAGCACGTCTCCTGATAACAAGTTCTAAGCTTTAGATGGAGTAAAAACTCTCTCTAAAGCTTAGAACTCTATTTATAAAAATAATTATATATTTATAATGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTAATTTTAAATAAGGATATAGCCTAAGGTATTGATTTGAAAGGGTTTATACCCTGTTTTTTAATGTGATTTTCCAAAAGTCAAATCGCCTGGTAAATTTTTAATGAAGCCTTGAAATATCAATGGGTTTGTGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATTTTTTCTAAATATCTTATTCTATTAGCGTCTTACCACCGTGCAGTTCAGTATAACAGTAAAAGGATATGATGGATTTATAGCAGAGTAATGTTAGAGGTAGTTTTTAGCTTAGGCTAGGAGCTACCTCTTTTTTATTGTTGTAAAATGTATAATAATATAATAAATATTTACATTTAGTCCTATATTGTACTATAATGTAAATAATATTACTAAGTATAGGGGGATTTAAATGAAAGCTTTGACTAAGATAGGTAAAATACTTGCAATATTAATAATTTTATCCATTATAATTGCTATATCACCAAAGCTTGGGTTCATAGTATTTACAATAGTTCCAATAATATATTTAATCTATCTATTCAAGAAAGGACCTAAGTTTAAGAATTATAATTTTTTACTAAAGGGGTTAATTAGTTTCTTTTTAATATTAGTTTCAATCACAGGAATTGGAGGAGTTTTTTCTGAATTTGGAGAAAAAGATAATAAGTGGAAACAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //