Array 1 417623-418688 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGO01000001.1 Salmonella enterica strain BCW_5908 NODE_1_length_684567_cov_4.05766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 417623 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 417684 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 417745 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 417806 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 417867 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 417928 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 417989 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 418050 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 418111 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 418173 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 418234 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 418295 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 418356 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 418417 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 418478 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 418539 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 418600 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 418661 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 434824-436317 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGO01000001.1 Salmonella enterica strain BCW_5908 NODE_1_length_684567_cov_4.05766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 434824 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 434885 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 434946 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 435007 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 435068 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 435129 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 435190 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 435251 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 435312 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 435373 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 435434 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 435495 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 435556 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 435617 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 435678 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 435739 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 435800 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 435861 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 435922 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 435983 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 436044 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 436105 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 436166 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 436227 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 436288 29 93.1 0 A...........T................ | A [436314] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //