Array 1 57899-59547 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT732526.1 Clostridium sp. Marseille-P2415 strain Marseille-P2415T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 57899 33 100.0 33 ................................. ACTTGCATCTGGGGCTCCTGTATTTGCAGAGGG 57965 33 100.0 35 ................................. TTTCAAATAGACCATATATTGAAGTTGTTGACTTT 58033 33 100.0 35 ................................. TGTGGTCACCCGGCTGAATGCAAGCACCATTTAAT 58101 33 100.0 34 ................................. CTGTAAGGGGACAAGATATATGGCAAACGGGATA 58168 33 100.0 34 ................................. AGTTATCCCGGATCCATGTCCAGCCGAGCCACCT 58235 33 100.0 35 ................................. GATAGAATATACTGGAATCTTATCTGTAGTATAAC 58303 33 100.0 34 ................................. CCGGAGGAATCCGTCAGGGACTACATAGCCGAGA 58370 33 100.0 34 ................................. GGGTTTACAATGGACGGTTCAAACGTGATTCACA 58437 33 100.0 35 ................................. CATCAGAATCACGTCAGGCAGAATGGCTTTTGCAT 58505 33 100.0 34 ................................. CTTCTACTCCGCCCTCTGCTGCCTTTTCTGCAAT 58572 33 100.0 35 ................................. GTACTATTTGGGGAATTGCTAAGTCCCCGGAGCTT 58640 33 100.0 33 ................................. CTGCAGCTCCTGACAGCTTTCCGGATCTCTAAT 58706 33 100.0 34 ................................. GAATCCATGTGTGTCCGCATCATCCACAATTACA 58773 33 100.0 33 ................................. TTGACCGGTACAGCCTCGACGGGGTTTGTATTT 58839 33 100.0 35 ................................. TTGTGCTTGCCGGTGACGAGGAAGCACCACCATGT 58907 33 100.0 33 ................................. CAATCAGTTCTGATTTAAAACCATCATAGGTAC 58973 33 100.0 34 ................................. AAATTCCTGGTAAACAGTAATCCAGTCTTTTAGT 59040 33 100.0 34 ................................. CAGTCCAGGGCCGTCCCTGCATCGTAAGGTGGGG 59107 33 100.0 35 ................................. TGCATCGTAAAATCCCTTTACTTTATTAAAATTTT 59175 33 100.0 36 ................................. CAACAAAGGGGAGGCACTTAGGACAGGGGTTTCCAC 59244 33 100.0 35 ................................. TGGCTTAATAAGTATCCCATCTGTGCGGCTGTGAA 59312 33 100.0 35 ................................. TTTGCTCTGTCCTTCGTGAACATTACCCGGTGCTT 59380 33 100.0 35 ................................. ATGCAATGGAATGACAGGAGCCGCCCCGGCATCGT 59448 33 100.0 34 ................................. CCGAATCATTCAACTGGAAACGGTACTTACCACT 59515 33 72.7 0 ......T.C..CA.........TA.G.CA.... | ========== ====== ====== ====== ================================= ==================================== ================== 25 33 98.9 34 GTCGAGGGTCGTGAGACCCTTGGGGATTGAAAT # Left flank : ATATCAAGTTTCATGGGCTATTTGAAAGGAAAAAGTACGCTGATGATTTATGATAGACATCCAGAATTGCAGAGTAAGTGGAATAAAGCGTTTTGGTCGCGAGGATATTATGTAGAAACCATTGGTAATATAACCGATGAAGCAGTACAGAAATACATTAAAGAGCAAGCAGAAGAGTCGCGCAAGGAAGATATGAGAAGTACCGCTTTTTAGCGGACCAGTAAGGATGCTTGCGACACCGCCCTATTGGGCGAGCAGTAAGAAAGCCCTTATTAGGGCTAATATCAAACCACCAGTTGAACTGGTGGTTGCTGACTTAAAATTTGCTAGGTGCGAACTGGAAGTGAACATGAAAAGTCTGGGAGATTCGCACTTTATTTTATTATAAAATAGAGTTGTTTATATGTTAAGAGTTTGAATTAGTTAAAAAATAATAGTGTAATTTGTACAAAGATAACAAAAATGTATTTTGGATGATTTTAATATTGGTTATTTTTGCT # Right flank : TCAATAGGAAAAGGAGAATATGGGAACGTACTTTTGTCTAGGGACTGTGGACTTGTATCAGCAGCTTTATATATGAAAAAAGGAAACGGATAAGTTTTAGAATGTCAACCAGTCTACTGGTGATTAACGTGAAAAAGGCGGCACCAGCAGATTATTTCATTGATGCAGGGCTGCAAGCAGCCCTGCAGGATATTGAGGTGAATATGATGTTATTCTGGTAGATCTGCAGGTATGTTTTAGATACAATGATATAAAAGTAATCTGTACCCTCCATTGAAAACGGTGCGCATTGATTGATATGAGGGTTTATCGCAATATGGATGGTAAGAAAACACTTGTACTGCAGAACATGCAGATTGAAGCTGGTGAGCTATTATTCCATTTACATACAAAAGGGCATACCTTCCATCAGGGGGACATGTCTTTTTTTCTGTCACAAAGTATGCTATGATTAACCGTAGTGATCATAGTGACTGTTCCTGTTTAAGGAACCCGGAAAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGGTCGTGAGACCCTTGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2383158-2382662 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT732526.1 Clostridium sp. Marseille-P2415 strain Marseille-P2415T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2383157 32 100.0 34 ................................ TGGTCAATGTGGCTATGGGAGTGATTACCCTGCT 2383091 32 100.0 35 ................................ ATCAAAAAAGCCCGAATACACGAGGTATCCGGGCA 2383024 32 100.0 34 ................................ CAGAGAACTGGCTCATTGTGAAGGATACAACGGA 2382958 32 100.0 35 ................................ TTTAAAACTTATTTCCCCGTTGCGGACAAACTTAC 2382891 32 100.0 35 ................................ TATGACGATGACGGAAAGATACCGCCGGACTTTTC 2382824 32 100.0 33 ................................ TTGTGGCTTCATATGCGTCCCCTCCCTTAATAG 2382759 32 100.0 34 ................................ TGTGTTGATGATCTTAATTTGACCCCGTTTATTT 2382693 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 100.0 34 GTCGAAGTCTGTGTGGCTTCGTGGATTGAAAT # Left flank : GAAGCCGTTGAGGCATTGAAAATCATGGCAAATTGGGTGAAAAGGCCTGGAAACCTCGGCTTATTAAAAAGAGGGGGTAATACAATTCCGGTATGCTATCCGAAAGGCGAAGATACAAGTAAGAAAGGAGATAATGCGTCTGCTTCACATCAATGGTTTGCCGGTAACCGTAACAGAAGTCAGGATTCAAATAATATGCAGCCAGTTTTCGCTAAGATACTTCCAGAAGTGAAGGATGAAGTGGGGAATAATGAAGAAAAGTGGCTTTATAAATTAATAAGGAAATAAGAAAGTGGATTCATGATAGAATTTTTATAATTATATTTTTCCGTGCGAATCCTAAGTGAACATGAATTCCCTGGGGGATTCGCACTCGAATTTAATTAAAAAACAGCTTAATATTTGAAAAAAACGATTTTTGTTTGTTTATCATTTGTTTGTGCTGTATAATGTTTACTAAATGCATGGAAAAACCAGTAAATATATTGGAGATTTTTGCT # Right flank : ACAGGCTGCACGGCGAACGCTTACAATGTATACCGGTCGAAGCTTATATAGCTTCGTGGTAAGTGGTAAACTACCTGTCCTCTAACATTTCGGATATTTTTTGAGATAATTATGTGAAAGTTTAAAAAGTTTGCAACAAACTTTTCAAACATTACACACTTTTTTCAAAGGAGGACCCGACATGATACACACGTGGATACTATTCAGATCCAAGGCTTGTTGCTTTTTATCCTCAAACAAACATTTGATTTGCCACAAATATAAAAAAATTAAGGAAATTAAGGCATATCATACAAAAACCACTAAAATTTCAAAAAACCACTTGTATTTTTAAAATACAAATGGTATAATTCTCCCAACATATCAAACGAGAGAACAAAGGAGTCTCAATCGCAGGTGGTGCGATTGCGGCTCCTCTTGCTTTTCCGGACCATTGTCCTTTAAAAGCAAACCGGACTCTTAAGGAGAACAAGGAGGTTTTCCCTTGCATAACTGCGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGTCTGTGTGGCTTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGAAGCCTTTGCGGCTTCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2396970-2393304 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT732526.1 Clostridium sp. Marseille-P2415 strain Marseille-P2415T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2396969 32 100.0 34 ................................ CATCGTTTCACCACCTTTCGACCTGCCATCTTCA 2396903 32 100.0 34 ................................ CAGAAGGATGCAAACGTCATTTTAGCTCGTACAT 2396837 32 100.0 34 ................................ CAGAGCAGCCAGAAACGCATACAAGGAACGGCAG 2396771 32 100.0 33 ................................ CGAAGACCGAAAATATTATTGCATCAGCCAGGA 2396706 32 100.0 34 ................................ TATTTAATTACATCCTCCACTCAGCCCCAGCTGC 2396640 32 100.0 33 ................................ CTGCATATCGTTAATCAATCTCCCCTGAGCCTT 2396575 32 100.0 35 ................................ CCCGGACAAGGCGAGGCTTAACCGAAAAAAGTTTG 2396508 32 100.0 35 ................................ CATGATCTTGGCTGTTACATCCTCGGTAGGCGCTC 2396441 32 100.0 34 ................................ GCAATAATGCTTTTTATAGCCTCAAATTTAGCCG 2396375 32 100.0 34 ................................ AGGTAGTCTATGGGCGGCTTGCGCTCCTTTTTTA 2396309 32 100.0 34 ................................ TTTTAACGCTGCTGCATCTTCTGAAGTATATGCA 2396243 32 100.0 34 ................................ TTATACTCAATTACTTTTAATTCATTCAATTTCT 2396177 32 100.0 35 ................................ CTCTAATACTGCTACGATCTGCCGTATCTGGCTAT 2396110 32 100.0 33 ................................ TGTTGCAAACCGTAAATTTTACCGTTTGCCTTT 2396045 32 100.0 34 ................................ AATGCCATGGAATCCGAACTCAAACGCATTTATA 2395979 32 100.0 34 ................................ ACGTTTACAGCAAGTAATGGAGTGTTGACAATTA 2395913 32 100.0 34 ................................ ATTACTTGCCATGGGTTTCACAGGAGAGAAAGCA 2395847 32 100.0 34 ................................ ATATTGAACAATTTAAAAACAATAGACACATCGA 2395781 32 100.0 35 ................................ CCACTATCGGCGGATTGATTCCGCTTGTAACCGAT 2395714 32 100.0 33 ................................ AATAGAAGGTTGGTATACTAAGTCCCTTGTACC 2395649 32 100.0 34 ................................ AGATATTGGAATCCATGCAGGACGGCTATTTGTA 2395583 32 100.0 34 ................................ ATCAAAGACAGGTGCATAATAGATATCTTAGCAT 2395517 32 100.0 33 ................................ TTTTGGGAAAGAGAAGAAGGTGAGGAAGTATAA 2395452 32 100.0 35 ................................ ACGTATCGTTTCTGAAAATGGTGGGGCGATTACAT 2395385 32 100.0 34 ................................ CATTTCATCCATGATCCCCATTATTTAATCCTCC 2395319 32 100.0 33 ................................ CGATTGTGCCGGGGTAATCTTGCCGGACTTGAG 2395254 32 100.0 35 ................................ TAAATGGTTTGAAAGCTATACGGGAACCCTCACAG 2395187 32 100.0 34 ................................ TAAGAGAATATCAGAGCGGAGCCTCACTAACCGG 2395121 32 100.0 34 ................................ TCCTTATAATCCTCGAGTTGATCCAGCGTATACA 2395055 32 100.0 34 ................................ CAATGCCGATCACGACACGGTCGCCCGCGACACT 2394989 32 100.0 33 ................................ CTTACTATATGCTCATTGAGCACAGCTTTCACA 2394924 32 100.0 36 ................................ TCTGTCAGAAAAATCATTCCCCCGGCGTTACACCGT 2394856 32 100.0 34 ................................ GGGAAATGAAAAGTTATGTAAACAAAAAAGAAAA 2394790 32 100.0 34 ................................ TGGATTTTTACCATTCGAATCTCCTTCCTAAGCT 2394724 32 100.0 35 ................................ CATAAGTATTTATTATCATAGTTATTACCTCCTAT 2394657 32 100.0 34 ................................ TCCCATATTATCATAAGCATCTTTATATGAAATA 2394591 32 100.0 34 ................................ AAGTACCAGGGAAGTTATAATGCCTCAATTCGTT 2394525 32 100.0 35 ................................ GAATGCTGTACGGGCATATATAGTCTTTACATTGT 2394458 32 100.0 34 ................................ CTTGACGAATTTTCTTATCTCTGGGAATTCCACT 2394392 32 100.0 34 ................................ ATACAGTGAAATGACAGGAGCCGCCCCGGCATCG 2394326 32 100.0 35 ................................ CATATCATACAGCGGCGTATATGGCACATCATATT 2394259 32 100.0 34 ................................ CGCGATAGCAGCATTACAAGAAGCTGGATCGAAA 2394193 32 100.0 36 ................................ CAGATATTATAATGCCGGCCGCTACAATATGGATAT 2394125 32 100.0 34 ................................ TTACGTAGCATGCTTTTATAAAAGGTGCTCTCAT 2394059 32 96.9 33 ................T............... TTGCAGGTGTGTCCTTAAGTATTGCAAGGTCAG 2393994 32 100.0 33 ................................ TATCGGCGCGGATGCGGATGGTAAAAAGATTTC 2393929 32 100.0 35 ................................ CCAAGGCATCTGACAGGCATGTGACGATGTTCGCC 2393862 32 100.0 35 ................................ ATTGCGGGAAAGGGCCGCTAACGGCTACCATGCTG 2393795 32 100.0 33 ................................ CTATTAACGACAAAAATAATAGCCACCTACTAT 2393730 31 96.9 34 ..........-..................... TGACCCTGTACTACATAGAGGGTATGAATTGGGT 2393665 32 100.0 34 ................................ ATTACGCCGTCTGTTTTCCACCCGCCACGTTGAA 2393599 32 96.9 34 ..........................C..... TGAAATAATCGCGTATAATGTGATTATAGGGTTC 2393533 32 100.0 33 ................................ TGTGATATCATCTATCCCTACGCCGGTATTAAC 2393468 32 100.0 34 ................................ TATAAGGCCGTATCGAAAGCGGGCGACACCTACA 2393402 32 96.9 35 ...................T............ AGCACCGTCCAGCTTACGGTTTTCAAGCCTCCAAC 2393335 32 93.8 0 ...........................T..T. | ========== ====== ====== ====== ================================ ==================================== ================== 56 32 99.7 34 GTCGAAGCTTATATAGCTTCGTGGATTGAAAT # Left flank : AGAGCATTCGTGGTGTTTGATGATATGTTTTTGTGTATGAGGTTGTATTAATAATTTTTGTAAAGAAAATGAGGTTTCTTTGGTATTTTATGTTGTTATGTGATAAAGTTATAATAATGATATATTTTATTAAAATATAGAAGTTGAATGAAATTAGTTATAGCATGATGATATGATATTGTTTATATAAGGTAATTAATGCTTTATTTTATGAGTTAGGTGTAATTTAAAAAATATAAAATAATTATACAGATTGAAATAGGATTTATTATTGTCTTGTTTAAAATAAAGTGTAAGAAATTTTAGTTTAATGAAGAAATAATCAATTGGTGCGAAACTCAAGTGAACATAAATTCCCTGGGGGATTCGCACTTTAATTATGGGGGAGAGTTGCACTATTTTTTAAGGATACTGGATTTAATTTGATTAATGTTTGGTTTTGTTGTATAATTGTATCAAAATTTTGAAAGGTGAGGAGGGGAATATTAGATGTATTTGCT # Right flank : TCTCGCATTAGATAGATCGGCATTTGCAATTAAGTAGAAGCAGATGTAGTAGAGAGAAGTAGAATAAGTATGATAAAAGCATCTAAGTTCATGATAACTAGATGCTTTTTTGTTGATGAAAAATTTCAAAATTATGACAACAAATACATACAACTTGTAGAAAAATGATAATAATTGTGATAAAATATCCTTAACAAATCAATAATGGAGAACTATTATGTGGGATCATTTAAAAATTTTTACTTTAAGAGTTTCATTTATGTCCCTAAAATCAGGAACTCTTCCGCCGTATTTAGGTTCTACAGTAAGAGGTATCATGGGGCATTGTTTTCGGGAATTTGTTTGTACGGCTTCAGAAAATAAATGCTTTTTATGTGAGAAAAGAGAAAATTGCCTTTATGTTAAATACTTCAGTAATACCGGTAAGGAGGCAGGTGCAATCAACCCATATGCTATTTATGTTTTAAAAGACGGCAAAACCGAATGGAGGGAAGGCGAAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCTTATATAGCTTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCGAAGCCTATACGGCTTCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.60,-2.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //