Array 1 215344-215159 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040274.1 Nostoc sp. C052 plasmid pC052_B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================ ================== 215343 33 100.0 48 ................................. AACTCAATAAAGAAAACTATAGTCACTATTTAGGCGTAGGCGTTAGAT 215262 33 100.0 38 ................................. AACTTTGCTGTGTAAGCCATGATTGTGTGTCCTTTAAA 215191 33 97.0 0 .............................A... | ========== ====== ====== ====== ================================= ================================================ ================== 3 33 99.0 44 ATTCCCACTCGCTGGGGATATTAATTGAATGGA # Left flank : GGCAAAGTGATTACTGCTTCAGGCGTTAAACCTACTGTTAAGGTGAAATGGCTAGAGATAACTTTTGGATTTATGGTGCTATTGAACCATTAACTGGAGATCATTTTCTTTATGAGTACCCCAAACTGGATGGCGAGTGTTTTCAACAATTCCTGGACTGGCTATCTGTGCAATTAGGTGGTGATTACGCTATTTTACAGATTGATCAAGCACCTGCTCATACAAGTTCAAAGATTTGTTGGCCAGAGAATATTATTCCTCTGTTTCAACCAGCATCAGCCCCTGAACTCAACCCAATTGAGAGACTTTGGCAATTTCTCAAAAAACCTCTTAAAAATCAACTTTTCTCTTCTTTACAAGCTTTACGCGAGCGCATCCAAGAAATCTTCGACCAACTTACATTTGAGGAAGTAATTTCTGTCTCTTCTTACAACTTTATTTTGGAAGCTTTATTCTATGCAGCTTCATATTAAATTGGTATAAGGGTCTAAACTTGATGG # Right flank : GATCACATTAGATAGTAAGCCAATGGGAATTAAAGAAGCCTTAAAATTAAGCTATATATTAATTGAAAGGAGATCACATTAGATAGTAAGCCTGCTGCCGTTACCTGTTGCCCTAGCACACGTATTGCTTTCTATTTTTGGGAACTATAACTAGAGGTTTAGAGGATAGGAAATGTTGGCAAAAAAGCAAATTCGTTGGCGGCGAGTTCTGCTGGTAACAGCTTTAGGGACAGTAATTACATTTGCGATGGCTACAGCATTCCGTTATTGGCAAGTAAAAACACAGGGTTGGTGTGTCCGGTTTGCTCCAAATGGCACTCAAAAAGTTTTGTACGGTAACGACTGTTTGAAATAAAACTACATCGCTGGGGCTTGTGGATGCTGCACAGAGTAATCCTACTCCGTTGTTGGCTGAAAACCAGAATTGTGGTGTTGAGGCGGCAGTCTCTCATGACGGTGCTTGTTCCGCCGCACCCATCGCTAAAAATGAAAAATCTTCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 225825-228317 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040274.1 Nostoc sp. C052 plasmid pC052_B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 225825 36 100.0 36 .................................... TGTTCAATCTGCTAAGGCTGCTGTTCAAGCTATCTA 225897 36 100.0 36 .................................... ACCTGTAAAGTTTTAGATTCTATCAAATTTGTTAAA 225969 36 100.0 42 .................................... TTTTTACTGCTTAACCTTGTTGTAATTGTTCTACCTTGGTCA 226047 36 100.0 40 .................................... TTTAATCGGAGTATTCCAAAAAGCTGCCTAAGACTTACGA 226123 36 100.0 36 .................................... CGCTAAACTGTCTGAGCTAAACGGATATCTTGGCGA 226195 36 100.0 44 .................................... ACAGGCAGTTACCGGGGATAGAGAAATTACCAGGATCTCATTTA 226275 36 100.0 39 .................................... TGTAAGGGCGATCGCTGGATTGAATTGGGAAACGGGAAT 226350 36 100.0 39 .................................... ACATTGAAACATTTAAAGACCAATTTAAAAGACTTATTG 226425 36 100.0 47 .................................... ATTCGATACCCTAATGGCAGTATAGAACGTGTAGGTATACTTTACAT 226508 36 100.0 35 .................................... CTTCCTCTCCTAAATCCCCGTCTGACGGCATTGGG 226579 36 100.0 39 .................................... GTTTTTGGTGAGAGAAGCCCAGTTTTTTGAAGGTACTGC 226654 36 100.0 40 .................................... TAAAGTCATTTTCGTGCATCATATCTGCAACGTCTTTAAG 226730 36 100.0 38 .................................... TTATTTACCCTCAGCCACCATTACAAACATCTAATCAA 226804 36 100.0 41 .................................... GAATTCAACATCAACATCTATATAAGTCATAACCGAAGTAT 226881 36 100.0 35 .................................... TGTAGCAGACTCACTGGGAAATTATATACTCCCTA 226952 36 100.0 35 .................................... ACAACTAGGTGATGTAACCAGTCAGCTAACCGACG 227023 36 100.0 46 .................................... ACAGTTATCGCTACTGAACGATGAGATTCAAAAAACGCTTGATGAT 227105 36 100.0 36 .................................... TCACCACACACGTTTAACTCAAGAGACACGCTGGAA 227177 36 100.0 44 .................................... ACTCCGCGTTCACAAAAGGCAAGAATATGACGATGAAAGGGGGC 227257 36 100.0 36 .................................... ATGATTTACAAAAAACCAAGGATTTTAAAAATGAAT 227329 36 100.0 39 .................................... TGATTTCTGATTCAAGTGCGGTAATAACTTGTGTAGTTT 227404 36 100.0 42 .................................... ATCTAAAATTATTCACGTTCGTTTAGCTGAACTACCTGTTAG 227482 36 100.0 34 .................................... ACTAGCTATTTGCCCCTCGCTATGATGTTGAACA 227552 36 100.0 38 .................................... ACGATACTGAGTAACCAGAGAATATCAGGGCGACATTT 227626 36 100.0 38 .................................... TCATCAGGGTATCCCGCGCAGACATTGCAACTGTTGAA 227700 36 100.0 40 .................................... ATCATCTTCTAACCAAGATGCAATAGGATTTATCCATATT 227776 36 100.0 37 .................................... GCTTGAGGCATTTTATTCTCAAGCATATCCAACATCT 227849 36 100.0 35 .................................... TCCACTTCCATCTTGAACTTCCCTTAACTCATTTT 227920 36 100.0 37 .................................... TAATCCCAGTGTTACAGCAGTATGCGAGAGTTTCACA 227993 36 100.0 36 .................................... AAGTTATAGGCGTTCACCCCAGAGGAATTCAGAATA 228065 36 100.0 37 .................................... ACGATAATATTGCTGCGTAGCAAAAAAAGGTCATAAG 228138 36 100.0 37 .................................... ATTAAACGCTTACCTCTAATCTTTTTATTTTGTTCGT 228211 36 100.0 35 .................................... CCCACCATTCAACTCAACGAATAAGCAATACTTAA 228282 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 34 36 100.0 38 GTTTCCATTCAATTAGTATCCCCAGCGAGTGGGAAT # Left flank : CAGACAGCAAATGAGAGATTTCTAACCCTCTTTGGGAATCCTTTCCAGGTGCATAAATTATGCTTTGGGCAACGCTGCTAATACCAGCTTTATCACTCGCCAAGGCAATGTCAACAGCCAGATGTATGTGTTTTAAGATTTCATACTCGGACTCTTCAGGATTAGGATTATAATTGCTCTGCACCCAAGGTTGCATTACTTCTAATTGTTGCCAAAAGTTATTGTCACCGTGCCCAGTGTTATTGTGTAACGCTTTTAGCACCGGATCATGGAGTAATCCCCATATTTTTGCTTGCCAGTATGCTTCTGACATGGGTGAATCCCTTTCTATGGTGTCCGGTTTGATTGTATAAATTTATATTGGGAATGTCCAATAATAGTCAATATTCATTTTTAAGATTGCTCAATCTCTTAAATCCTTTCATGGCAAGGCTTTGAGCTAATTGGTTGGATTTTTACTAAATATTTTTTATTTTTTGACAAATTGCATTAGTTGTGCA # Right flank : TCCCTCAATTTTAGACCCTTACCCAGTAAGGAATCCAGAAGCCGTTTCCGAAGGTCACAAAAATTAATCGCCAAACTGCCATTCCATCAATCACCAACATACCCCAAACCCTTACCCTGTAAGCGACCGAAGGTCACAACGCTCAAATAAGCATTTCAGCTATTTTCCCTGAACCTCGGCAAACAGAGCTAAATAATCACCGAACTAGGCGGTTCAATCACAGATGGCCCCACACCCCAAGATTCTACTTGAGAAAGAGTATGCCGTGACAAAGGATAAAATCGTAGACTATCTTCAGTTAAATTCAGCTTTTTTCTTAACCGACGACGCAAATCTTGATATTTCTCGGTAGTTAACTGACACTCAAACACAGAATATTGAACTCTCTGTCCATAACCTTCAAGTAAATCAGCTACCTTTTTACGTCGTTTATCACAAGGAATATCATAGGCAATTACATATAAAAACATAATTTAGCCTCAATCAATACGATAAGGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGTATCCCCAGCGAGTGGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 35278-35960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040280.1 Nostoc sp. C052 plasmid pC052_H Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 35278 36 100.0 37 .................................... CTTACTATCACCTCGGGGTGAGTAGAGGAAAGCTGTT 35351 36 100.0 34 .................................... TTTTGGGTGGATTGGGTTGCAACCGAGATTGCGC 35421 36 100.0 38 .................................... GCTTAGTTAATCGTTTAGCTGGTCTTTGCAAAGCTGAA 35495 36 100.0 36 .................................... GAGAAATATCTTCATTTCTCATTTCTGCCTCGGATA 35567 36 100.0 36 .................................... ACTTTAATGTCCAATCTTGTCTCGTAATCGTCCACC 35639 36 100.0 39 .................................... GCGTGTTCGCCGTTGGTTATTTCCCAGGCGGCCACAATA 35714 36 100.0 31 .................................... TGCAAGTGGGCTTGCATACAGCACCGTGTGG 35781 36 100.0 37 .................................... ATTGTGAAGTCGCTCCAGCGGAACCCGCCTATTTCGA 35854 35 97.2 35 ................-................... GATACGGTTTGTCGCCAGGAAATGTCTTTGTTTTC 35924 36 88.9 0 ..............................ATTC.. | C [35953] ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 98.6 36 CTTTACATAACCACTTCCCCTAACGGGGATGGAAAC # Left flank : TTCAGATATTAAAACTGAAGTTGGCAAGCGATCGCTATGGCTATCAGCCAACTTTGGAGCGCGGTTATAAGAGTTATGCCACAGAAAAATAATAAGCCTAACTATTGGGGCGATGATGTAACCTCCTTCTTCAGGATGTCGTTTTACCTGTGTAGTATGGTCTTAATGCTTACTGTGAGACTGTTTCACCTGGATGTCGTCAAACCTCCATTTCCCGACATCTCCGCCCCAACTATTAAGGGTTTTGACAATATCTTGACTTTTATAGGTAAAGTACTATACCTTTTTTCCAGGTGTGTTGAAGTCCATCGACACCACTCGCCAGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGCAACGTTTCCAAGCTGTGAAATCTACTAATTATTGAGAATTCATTGGGAGTTATTGACACTCAACAAAGTGGTGTCGATTGGGGTATCTCAAACCCTCTCCCTGTAAAGGTTCCAGAAGTGAACT # Right flank : CATCAATTTCAAGTTTTTTATCAGTGGCTAGCTCTACACCACTTCTAGCCACAGGCGAGAGCATAGACAACGCCGCCGCCGCCCCTAACACCTGAGCGTCAGTCACTTCCAAATATCTTTGCAACTGTTCCAAATTTCGATGCCCTGATATCTCTTGAATCACTCGCAATGGTATTCCGGCGTTACTCATTTGAGTTAGCGCAGTCCTTCTAAAGCTGTGGGTACTCACGCCAATTATCCCAACTTGTTTGCAAGCTTCTCTCAAAATCCTAGCGGCTGAGTCTTCGCTGATGTGTCCATCACTGCGACCGGGGAACAGATAATCATCCCCTGCTAGTGGGTAGTATTCAACCAGTAATCGCCGTAAATCTTCAATCACTGGGATAGACCGAGTTGCAAGCTTCCCTTTCGTATTTGACTTTCTGATAATCAGCCTGGGTCTAACGTTACTCTTGGGCGTGTAAATGTCTTGGGTCAACAAAGTACAGCATTCACGGATT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATAACCACTTCCCCTAACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 40929-40246 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040280.1 Nostoc sp. C052 plasmid pC052_H Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 40928 36 100.0 37 .................................... CTTACTATCACCTCGGGGTGAGTAGAGGAAAGCTGTT 40855 36 100.0 34 .................................... TTTTGGGTGGATTGGGTTGCAACCGAGATTGCGC 40785 36 100.0 38 .................................... GCTTAGTTAATCGTTTAGCTGGTCTTTGCAAAGCTGAA 40711 36 100.0 36 .................................... GAGAAATATCTTCATTTCTCATTTCTGCCTCGGATA 40639 36 100.0 36 .................................... ACTTTAATGTCCAATCTTGTCTCGTAATCGTCCACC 40567 36 100.0 39 .................................... GCGTGTTCGCCGTTGGTTATTTCCCAGGCGGCCACAATA 40492 36 100.0 31 .................................... TGCAAGTGGGCTTGCATACAGCACCGTGTGG 40425 36 100.0 37 .................................... ATTGTGAAGTCGCTCCAGCGGAACCCGCCTATTTCGA 40352 36 100.0 35 .................................... GATACGGTTTGTCGCCAGGAAATGTCTTTGTTTTC 40281 36 80.6 0 .............................CTATTCA | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 98.1 36 CTTTACATAACCACTTCCCCTAACGGGGATGGAAAC # Left flank : TTCAGATATTAAAACTGAAGTTGGCAAGCGATCGCTATGGCTATCAGCCAACTTTGGAGCGCGGTTATAAGAGTTATGCCACAGAAAAATAATAAGCCTAACTATTGGGGCGATGATGTAACCTCCTTCTTCAGGATGTCGTTTTACCTGTGTAGTATGGTCTTAATGCTTACTGTGAGACTGTTTCACCTGGATGTCGTCAAACCTCCATTTCCCGACATCTCCGCCCCAACTATTAAGGGTTTTGACAATATCTTGACTTTTATAGGTAAAGTACTATACCTTTTTTCCAGGTGTGTTGAAGTCCATCGACACCACTCGCCAGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGCAACGTTTCCAAGCTGTGAAATCTACTAATTATTGAGAATTCATTGGGAGTTATTGACACTCAACAAAGTGGTGTCGATTGGGGTATCTCAAACCCTCTCCCTGTAAAGGTTCCAGAAGTGAACT # Right flank : CATCAATTTCAAGTTTTTTATCAGTGGCTAGCTCTACACCACTTCTAGCCACAGGCGAGAGCATAGACAACGCCGCCGCCGCCCCTAACACCTGAGCGTCAGTCACTTCCAAATATCTTTGCAACTGTTCCAAATTTCGATGCCCTGATATCTCTTGAATCACTCGCAATGGTATTCCGGCGTTACTCATTTGAGTTAGCGCAGTCCTTCTAAAGCTGTGGGTACTCACGCCAATTATCCCAACTTGTTTGCAAGCTTCTCTCAAAATCCTAGCGGCTGAGTCTTCGCTGATGTGTCCATCACTGCGACCGGGGAACAGATAATCATCCCCTGCTAGTGGGTAGTATTCAACCAGTAATCGCCGTAAATCTTCAATCACTGGGATAGACCGAGTTGCAAGCTTCCCTTTCGTATTTGACTTTCTGATAATCAGCCTGGGTCTAACGTTACTCTTGGGCGTGTAAATGTCTTGGGTCAACAAAGTACAGCATTCACGGATT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATAACCACTTCCCCTAACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 40537-41445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040272.1 Nostoc sp. C052 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 40537 37 100.0 37 ..................................... AGCTCGTTGCATTGCATTTGAGTGCGCTGTCCGAGTT 40611 37 100.0 34 ..................................... TTGATGAGCCGCGCATAGATACTGTAGTATTGGC 40682 37 100.0 37 ..................................... CCTTTTCTCTGGTATGTATCCACTATCTTCTATAAAA 40756 37 100.0 34 ..................................... CTATATTAGTTCTAGCAAAGGGGGTATTACTTTA 40827 37 100.0 37 ..................................... TTGATATAAAAGTAACTTTAGGTGATAAAGTTATTAA 40901 37 100.0 35 ..................................... AAATCTGCAATAGGATCTTCAGTAATGGGTATACC 40973 37 100.0 34 ..................................... AAAAAACAACTCTATTCAAATTAGTAATAATATC 41044 37 100.0 36 ..................................... TCCTTCATGGAGGCTACACCCTGCCTTCTGGCTTCG 41117 37 100.0 36 ..................................... AAAATAGTGGCGTAATTCTGGATAATCAGAAGTCCT 41190 37 100.0 35 ..................................... ACTACTTTAGGAAGCTTCAAAGGGTATGTGGAAAA 41262 37 100.0 39 ..................................... AAGACTATATCTTTTATTTCCTCTAAAAACCCTTGTAGC 41338 37 100.0 34 ..................................... TTGTAATAATCATCTTGTAAGTTACGATGCTCTT 41409 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 100.0 36 ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TGTTGCAATGAATTTGCGGCGAGTTACTTCTTGCATCATCTCTACCTTTAATTAGCGAAAAGTTTATTATTTGTTATACGTACAGTACTATAAAATAAATACTACAAGTTATCAATCAGCTTACCGTAATACTAGCTTCCTTTACCGTCTAAGCCTTCCTTGCTGTACCTGTATGTTAGGGAAAAATCGGATGTATTGGCAAAGAAAAGCCATAGCACTCAACAATTTACTGTGCAGAGTTCCCTGATATGCGCGGAAGGGTAGGTGTACAAATTTCAAAGCTTGAAAAAAGTGCTTCTATCTCAACTCCAGCTAGCATTTCACCCCACCAATACCCAATTTACATCCGCGCAATCTCTAAAATGCTTACAGTAAACGGGTTTCATCCTTCAAGCTTTCCCGACACTCTTCCCAAAAAAATTCTCTAATGCTATGATTACTCTATATTCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGCTTTCAGGCTCCCGCT # Right flank : CAAAACAGCAAGCTTATACCTTGTATTATCTCTAGTAGTCTGCCAACCCAAAAATGCGCTTGTGAGAACTGGGGAAAGGGGAAAGGGAAAAGGGTAAGAGATTTAAACCCTTTCCCCCCGCCCCTTATCCCCAGAGGGGACCCCACCTTCCCCCTTACCCTTTACCCCGCCAAGTTCACTTGGCGAACTACTAGAATTGCAGTACAGCACTTCTGGCAGCTATGAGGTACATCCATCCTCAAAGCTGAAAGCTATGCTAGGAAGGTGCAAGGAGAAAAACTGTATTGCATGGTGGTTTCGATGAAGTCCTACTGTCCAAATCTCTGCTGACTTTTAACCGTTCTACTTCTTGCTGTAGTTCGTAGATGATTTTCTGTAACTCACGTATTACCTTGCTTTGCTCAATAATTATCTCCACCAGTTCTTCTTTTGATAACTGGTTCAAGCTTTCTCGGTCTAAATCTTGAGGCAGGTTTTGGTTCATATTTGTGATATTCTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 398672-398339 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040272.1 Nostoc sp. C052 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 398671 36 100.0 37 .................................... ATTATGACGGTTTTTGGATTGTTTATGCAAAGATTTT 398598 36 100.0 40 .................................... CCGTCAATATTGAATTGGGTGTATGGGAAAATCTCTAACC 398522 36 100.0 41 .................................... ATGCTCACGTTGGGTTGAGTGGCTGGGTTCGGTAGATATAG 398445 36 94.4 35 ..............TT.................... TGCTCACAGTAACCGAGATTGGAGAAGCGTTCGAG 398374 36 77.8 0 ...G..G...G..C.A..............AA...A | ========== ====== ====== ====== ==================================== ========================================= ================== 5 36 94.4 38 CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : TTTTGTCACAGGTGCGATCGCTACTCTTTATCTCTCTCTGAAACTCTTATTCCTTTGTGTCCTTCTCTGACGAGACGCTGCGCGAATGCGTCCTTCTCCCAAGGGGAGACGCTGCGCGAATGCGGTTCGTTTTTCATTATTTTCCGTAAGTCCTGTAGTCTGAATACATAAAAACCGTTGTAATCTTGGCGTAGAGATGCAATCGCTCAAAATCCCTTAGTTTTTTGTAACAATTGCGTAATAAATTTGACCAAAATTCCTAAAAAGTTTTATTTTAAAAACATCGTGTGTCGTTCATCCACGCATCTCGCCCGAACCTTGAAAACCCCATAACTTCTCTACGAGACGCTGCGCGAACGTTTACATGCGTCGATGCCTTATACAGCATAGTTTCCAAGCTGCAAAATTGACAAATTTTTGAAATATTTTTTTCATTTTTCAGAGATGCGTCGATTGGGGTATCTCAAACCCTTTGCCTGTAAAGCTTCCAGAAGTGAACT # Right flank : AGTTGAAATAGCCAGTGCAATGTCTCGCTTACTTAATTGAAGTCAGGCGATGTCTACCACGAGCCATATCTACTGCCTGATAATGCTGATAAACAAAACTGGAAAATAGCTGACTTTTGATTCACAGCGATCGCAATTTTGAAGCCATTGCCTAAATGCGTTCACGCAACTTAACCTTCGCGCAGCGTCTCGTAGAGAAGTTATCGCTTCAACATCTCTTTTCAACCTGGAATCTTTGTTGCAAAAAGACATTAAAACAAATTGACAACTTGTAGAAAATTTGGGATTATCAATCTACGACAATCCGATAGATTTTTAGTAGATTAAAATTTATTTGGATCTCAAGGCGAAAGCACCGATCTCGCCAAAACAGGAAAATCTTTTTTTGGAAATCATCTTTATTCCGTATCAGATTATCTTAATTCACCATAAATAAAATTCAGGTTTTTATCGTGAGTGCTTTCGATTCAAGCGGGGTTAAACCAGACGCAGAACTATTC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 1445398-1446494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040272.1 Nostoc sp. C052 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================= ================== 1445398 37 100.0 33 ..................................... ACTACATTGGCGGGAATTATACCAGGGTATAGC 1445468 37 100.0 34 ..................................... TCTTTAATAAAAAATTTATTAATTCCAGATTCTA 1445539 37 100.0 37 ..................................... CTATTATCATCCAAATTAATAGTATTACCGATAACAT 1445613 37 97.3 35 T.................................... AGATATTTCACCCAAACTCGATAGTGGATCGATAC 1445685 37 100.0 35 ..................................... TAGTGAAACTCAGGAAACCCCTCAAGAATCGACTC 1445757 37 100.0 33 ..................................... CATCACGACTCTAACAACTCAAAAACTTAAAAT 1445827 37 100.0 34 ..................................... AGTTTCCCTACCGTTACGGGTAAGTTATGTTTGA 1445898 37 100.0 37 ..................................... GCTTTTGAGGCTTCATCGGCTCCGCCTGAAGTGGTAA 1445972 37 100.0 33 ..................................... CAGATATTACGTATGCACCCACTAAAGTAACAA 1446042 37 100.0 37 ..................................... CGGTTACTAGCTTCTGTTGTGCTTGCTGTTTAGTGAC 1446116 37 100.0 35 ..................................... CCCTGGTGGTGGTATTTCTACTAAAGAAGCTGACT 1446188 37 100.0 34 ..................................... TATCATCAACTACTGGCTTTGGAACATAGGGTTT 1446259 37 97.3 42 ............................A........ ATGAGCTTTCCTGGTTTAAATCCTCCTATCATTGCATCTAGG 1446338 36 81.1 81 ..........................C..-..CGGTT AAGGTTTTTTGATGGAAATTGTAGAGTGCAAAGATCCGAGAAATCATTATAAAGACGCGACAAATCGCGTCTCTTGTCTTA CAA [1446362] 1446458 36 81.1 0 .CC.A..G.-.T.G....................... | C [1446461] ========== ====== ====== ====== ===================================== ================================================================================= ================== 15 37 97.1 39 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : ATCGTTTTATGTTTTCTCTGCTATTCATAGAATTAACAGACCTCATACGCAATTCTGCGCTGGAAAGGGGAACAAAAGAGGTTCTGATTAAAACAGCTTTTAGAGAATTTGCTTGCGCGATAACAGACTTTGAAGACGTTGCCAAATAAGGTTGATGGGGGTGTAGGTATTGCTTAGGCGTAGCTCATCCCAAGCATTGCCCAGAACTGAGCTAACCTAATCTAGTAGGATATAGTAAACAGCTTTCCTATCGGATTAGTTTTTTTTGGCTGAATGCGCGGATAGGTAGGTGTTGGTAAAGGGGTAACTACAAAAATGCCTGAATTGACCTATATGCAAGCATTTCAGAGCATTAGCATTTATAAACCATCCGCGCACCTTATGCAGACTAGTTTTCAGCCATTTGCCTCTACCCAAATCACAACTCCTCGTGTTATGATTTATCCATTCGCGCAACCGAACCTTGAAAACCAAATAAGACAAGGCTTTCAGAAGCCCGC # Right flank : CAAAACTTAGAAGTATTAGTAATTAAATCTTTTCTATTGCAATTACCTAAAAACCATCTAAAAAGAAATTACTTTGCGATCGCGCAAAAACTTACCGCTTATATTGCGCGGAGCATCAGTAGCTAACCAGATTGCAGTGTCAGCACCTTCTTCTGGCGAACGGGGTGCTGATGAACCACCCATATCTGTTCTCACCCACCCCGGACAAATGGAATTGACGACGATCCCTTTGGAGTCCAAAGCTTGTGCCAACATAATTGTTGCGCCATTTAATGCCAGCTTTGATAGGCAGTAACTTGGAACACCAGCAGATAAGTCTGATAATGCTCCATATCCACTTGAAACGTTAACAACTCTGGCATCGGAGGATTTTTCCAATAGGGGTAAAAATGCCTGTACCATCCGAATTGGGCCAAAAGTGTTGGCATTGATTGTGGAATCAAGCAACTCACGAGAAATAGTCAGAATATTTATATCCTTATCTGGATACACGCCAGCAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 4 1574435-1574979 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040272.1 Nostoc sp. C052 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 1574435 35 100.0 35 ................................... AGGAGCAACAGAATGGGGTTAGATCTTCAGTTTCG 1574505 35 100.0 37 ................................... TAATTAATTACAGACAAAGTTACCTGTCTAACCAAAA 1574577 35 100.0 37 ................................... TATTACCAAGTGTGTGAAGAAATTAAAGCAGATGACA 1574649 35 100.0 42 ................................... ACTTTGGAAATGAGGTGAACTGCTTCAGCAGTTTCATTTCAT 1574726 35 100.0 37 ................................... ACTGGGAGGTATAGGAATTTTTCTAGGATTCCTAGGA 1574798 35 100.0 37 ................................... CAGCTTCCTAAGCTTGGTATCATGGGGGATGATAAGC 1574870 35 100.0 40 ................................... TACTGTCATGGATACGACTGTCGGTTTTGTTTTTTGTTAA 1574945 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 8 35 100.0 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : GATTATTTAAATTAGTCGCAATTTGAAAATGTTCTGCTCCAAAAATACTTTTCCAAAGTTCCAGGGATTCTAAAAAATATTTTTCGGCTTGTGAGTAATTCCCTTGTGAATGGTAGAGTACTGCCAGATTATTTAAAGATTGTGCAACATCAGGATGTTCTGAACCTAAGAGACTTTTTCTAATAGTTAACGCTTGTAAATACAAGGGATTGGCTTCTAAATAACATCCTTGTATTCGATATAATTCTGCTAAGTTATTCAAGCTATCACAATATTCTGAATGCTCTGTTAGCTGCTGGCTTGACCCTAAGTTGACAGCTTCTTGGGCAATAATTATTGCTTGCTTGAAGTTTCCTTGTCCAGCAAGTTGCACAACCTGTAAGTTAAGTTGATTTAATTTTTCTAAGAGTTTTTTCATCTGCTAGTTCCAGATGCTTGTATATTTTTTAGTTTTGACTTTTCAATCAATTATTTATTTTACCTAAAATTGTTCATCATCA # Right flank : CCCTACCCTTTTAGAAGCCTTGTCCAGAGAGGGTTACAGATACCCATTTTCGCGGGGGGTCTAATTTACCTGTCAATAAGTATAGTTTATTGACAATTAGATACAGGTTAAGGCATCTCAAAATCATACCCAGCAAGCTTTTCGCGGGGGTCAACGAAATCATAAGGGTTTCAGGGAACGCTCTACCCCCGCGAAAAACTTACGTATGAAAAGTCAAACTAAGCACTTTTACTTTTATTTTGAAACCTGATATTAAGTTTTCAAGGTTCTGTGGCTATGAGCAGTAGTATAACAAACTACTTCAAGTTTTGAACGCCTAAACTATTAACTTTTTTATCGTACAGTAATCATGTAATCTGTATACCAAAGTTGATAGTCTCCGCATTCAGTCACATATTTTAGTAACTCTATAAGATGACTTGCTTCTAGTGACAAAACCTTATCATTCTCTTGCCGTAACCAGTCTAATGTAGGTACTTCCTTGGTAAGGACTGCGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 5 1952120-1951946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040272.1 Nostoc sp. C052 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 1952119 29 100.0 44 ............................. GGAAACTTTTGCTTTTGGCCTTGTTACCAACTCATTCCACCAAA 1952046 29 100.0 43 ............................. GGAAACTTTGTCCTGCTGCTGATTCAGCAGCGAAGAAAGTGAA 1951974 29 96.6 0 .......................T..... | ========== ====== ====== ====== ============================= ============================================ ================== 3 29 98.9 44 GTTTTAATTCCTTTACCCCTCACGGGGAT # Left flank : GGCAAAGGAACCGGGCTTGGCCTATCTATTGCTTATCAAATTGTGGTTAATAATCATCATGGCAAGCTCACATACAATTCTAAACCAGGTGAAGGCATAGAGTTTATTATTGAGTTACCGATTCGATAAATTTAGAATTTGTAAACTCAATAAAAAACATCACTATAGAAAAGTTAATACTTATAGCTTTCAAAACTTTAAGTAGTTTGTTATACTGCTGCTTATAATCATAGAACCTTGAAAACTTAATATCAAGTTCCAAAATAAACCAAAAAGTGCTTAGTTTTACTTTCCATACGTAATTTTTTAGCGGGGGTAGAGCGATCGCCAAAACCCTGATGATTTCGTTGACCCCCGCTAATCGCTTACTGCATAAGAGTTTGACAAGGGTATACAAGTCATTGATTCTCAATAATTTGTGCTTGTTGATAGTTAAATTCGACCCCCCGCTAAAATAGGTATCTCTAACCCACTCTAGATAAGACTTCTGGAAGGGTAGG # Right flank : ACAAACAATCTCACGCTAATTACGAACCGACAACAGTTTTCAATTGAATAGACCATACGCATAGGGGCACATATATTATTGTGCCCCTGTAATAATGTATATTCCCCGTATTTTAAAATTGCTGTATGTCACAAATCCATTTATCCAGAAATTGCTGTAACTAACGAATATTCACCTCTTGCAGGTAATTTACTCCCTGAAGATATTCAATTTTAGTAGCTGAGTTTTTAGAGAAGGATGAATTTGTTCTTTTTGCAAAAGCTACCTTTTGATTGTCATCTGTCACGCGTTGTTTTTGAGTATACTCATTCAATTTGACTTGAGCTTGAGCATAAACTAGAGTATCTTGAGGAATCTTTTTGAGAAATTTTAGAGCCAGATCGAAATCACCAATAGATGCTTTTTTATAGGCTTTCTGCAAAAAGTAAGCTGCTCTGATCTGCCGTTTGCGATCGTACTCAGCTAACTTTTCTTGAACTAAAGCACCTGCATGACTTTCT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTTTACCCCTCACGGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 6 2245656-2248306 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040272.1 Nostoc sp. C052 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2245656 37 100.0 35 ..................................... CAGCCAATTATCGAAGAAGTAGCAATCTAAACCAA 2245728 37 100.0 41 ..................................... GGCATAATCAAGCTGATCTGCCATGTTGGCTTGTCTAGCTG 2245806 37 100.0 37 ..................................... ATTTAGAATTCTAACTTACTTAGAAATTCTTCTTCTG 2245880 37 100.0 36 ..................................... CACCAAGGAGAAAATTAAATGAATTCCCCTAATTGC 2245953 37 100.0 35 ..................................... CGATAAGTAAGTTAGCAATATAACGACCGCTATCT 2246025 37 100.0 34 ..................................... TAGTAGGAAGCTTCCATTTTTTAGTACCACGCGG 2246096 37 100.0 39 ..................................... AGCACAGACCACCCACTAGCCAGCAAACAAGGCAGCTAC 2246172 37 100.0 35 ..................................... CCTCTAACCCTAGAAAGCAATATTGCAATGCTCAG 2246244 37 100.0 34 ..................................... CTACACTTTATTATCTAACAATAAGTTATCTTTA 2246315 37 100.0 35 ..................................... ACTAACACAGAAGCTTCATTAATATTTACTAGTAA 2246387 37 100.0 36 ..................................... GTAACTTATGTAATTGAGTTGATGGTTATGCTCTCA 2246460 37 100.0 35 ..................................... TATGAGGTATCAGGATAGAAGCTTAAACTTTACCT 2246532 37 100.0 37 ..................................... GCTTCTCTCCACTGATGCAATCATTCAGTGGAGATGG 2246606 37 100.0 37 ..................................... GCCGGAATTTAAAATACCAGGTTTCAGGTTCCCCGAA 2246680 37 100.0 33 ..................................... TTTATCAACCTTTCCCGCAAGAGCTACTCTCGT 2246750 37 100.0 37 ..................................... CTTTGCAAAAATGGTGGGATGATTTTAAATCAGAGGT 2246824 37 100.0 36 ..................................... GGCTGTTTAACAGACTTAATAACATTAAACACTTGA 2246897 37 100.0 36 ..................................... TAGAGAAATAGGATATGAGGCGTGGGTATACAATGA 2246970 37 100.0 34 ..................................... TCTTTTCGCATTCTCGATCAAGTTGTTCTTGAAT 2247041 37 100.0 41 ..................................... AATAAAAAGACTAGGTTATCTACCAACCTAGTCTAAATCCA 2247119 37 100.0 34 ..................................... TACAGATTTTGCAATAGCCAGCGTTCTTTTTTGC 2247190 37 100.0 31 ..................................... AAGTTAAACATGGTGTACCCCATGTATGAGG 2247258 37 100.0 35 ..................................... TTTTGTGCATGATGGCGGTGAAACGTCTAAATGGC 2247330 37 100.0 35 ..................................... AATATCAGTTATCCCCAGGCAGTAAGCCACGAGAG 2247402 37 100.0 36 ..................................... CGCTCTCAGCACTGATACACTTTACGGCATACATTT 2247475 37 100.0 41 ..................................... CTACAACTGGGGAGTCGCTGCAATCTTCTTCTATGTCAGGG 2247553 37 100.0 33 ..................................... CGGCCCTTTACCCGGCTGAACGTATGTCACGGT 2247623 37 100.0 33 ..................................... CAGTGTTGTTAGGTAATCAACTATAAATTGCGG 2247693 37 100.0 40 ..................................... TCAACTCCAATAGTAGAGATAACAGGACTGTACATTCCTG 2247770 37 100.0 33 ..................................... CGGCCCTTTACCCGGCTGAACGTATGTCACGGT 2247840 37 100.0 33 ..................................... CAGTGTTGTTAGGTAATCAACTATAAATTGCGG 2247910 37 100.0 34 ..................................... TAGCGATCGCATATCGCCGGGTATTCCCGAACGA 2247981 37 100.0 34 ..................................... TGGGCGGATGAGTACAGCAATCGGTTGAGTCTAT 2248052 37 100.0 36 ..................................... AGGAGTAGGACTTGGACTTGGTGATGGCGTAGGATT 2248125 37 100.0 35 ..................................... ATATCAGAATAAAAGTGTGCTTTAGTTTTCAGACC 2248197 37 100.0 36 ..................................... TTTAAGGATTGTAAAGATAGCTGATGTAGGGACTTC 2248270 37 86.5 0 ............................TT..T..CG | ========== ====== ====== ====== ===================================== ========================================= ================== 37 37 99.6 36 ATTGCAATTCATCTAAATCCCTATTAGGGATTGAAAC # Left flank : CAAGAGTAGTATTACTATTGTTGCGTGTGATGTGGGAGGCTATAAGTATATGAAGACTGGGATTTCTGGCTTTGAAAGCAGCGATCGTGCCCCCCATCACCTACCGCAAGGCGGAATTAAAAATTAAAAATTAAAAATGAATACAACGTAAGCGTTTCATTCATTTGGAATGGGTGGTTTATTTGCGCCGTGCTGTATTAGGTTATTTTTAGCGATCGCATCATCTCACAGGTTTCCTGTATGTAAAATGCGCGGAAGGGTAGGTGTACAAATTCCATAGCCTCAAAAAAGTGCTTCTATCTCAACACCAGCAAGCATTTCACCCCGTTAATGACTCGATCATCATCCGCGCGATGTCTGAAAAGCTTACAAAAACTGGGTGTCAGCCTTCAATCTTTCCCGAAACTCTTCCCAAAGAAATTCTCTAATGCTATGATTGCTCTAGATTCGCGCAAACGCACCTTGAAAACTAAATATAGCTTGGCTTTCAGTATGCCGCG # Right flank : GAACCGCAAAGGACGCAAAGAAGAGAAGCTTAACTGAACTGTATTGGCCTATGTCTCAGCAGATGGCTTGCTTGTAAAGCTTATCCGTGGTTTGATTAAAATACGGCATCTAAATCGACTTAGTGTATTTTGTTGACGAATCAATTATCTGAATTAACTTGTCAGCCACAAAGTAAATATAAAACTTTCCATGCCTATCCAAACCATTGGTATCTTAAGTCCTGGTGATATGGGACAAGCGATCGCAGCTGTTCTCAATCAACATGGATTGAAAACTATTGCAGCCCTAAACGATCGCAGTGAACGAACTCGGCAACTAGCAGCCGCAGCCAACATTCAAGATGTGGGTTCTCTTACGCAATTGGTAATTGAATCTGATGTAGTGTTGTCAGTTCTAGTACCCGCAGCGGCTACCCAAGCAGCGCAGCAAGTAGCTGAGGCGATCAGTAATGTTGGTAAACCCATTCTCTATGTTGACTGTAATGCGATCGCACCCCAGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 7 2620269-2618847 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040272.1 Nostoc sp. C052 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2620268 37 100.0 33 ..................................... ATCCCTTCCCTGCATGCCATCAAATAGCTTAAC 2620198 37 100.0 34 ..................................... TTTGCATTTTCATTTTAAGAGCAATGCGGCTATC 2620127 37 100.0 34 ..................................... ACATACATTAGGGATTGCAGAATACTTGGACATC 2620056 37 100.0 35 ..................................... TCAATATTCATTTAAGGAGGGTGTGCAGTAAATTT 2619984 37 100.0 35 ..................................... CCTAAACTTAGAACACACAAGGACAAGGAACCTAA 2619912 37 100.0 34 ..................................... ATAAATACACAATCTTTTCAGTTTCAAACAAGAA 2619841 37 100.0 36 ..................................... GGTTGGGATCGGCTAACTCGCAATCTTTCTCCTCAT 2619768 37 100.0 35 ..................................... CTCATATCCATCTTGCAAGTATGAGAACTCGCTAG 2619696 37 100.0 35 ..................................... TTCTGAACAATCCATACAATCCATCAAATAATTCC 2619624 37 100.0 34 ..................................... AAGCAATCTATACGTATTTATAACATTTCCTTAA 2619553 37 100.0 34 ..................................... GTTCATGATATTGACTATACATTTGTGCCTTCTC 2619482 37 100.0 34 ..................................... AGCAATAGACACCGGAACCCTAACCAATTTAGTA 2619411 37 100.0 41 ..................................... CAATATTTTCTGAGTATTGACATCCATCGTAGTAGGTTCGG 2619333 37 100.0 40 ..................................... GTAATTTTTGGTGGCAGTATATTAACGAAGGTGAGGTATA 2619256 37 100.0 44 ..................................... TTAAACAGTTTAGCTATGGGAATAGCTATACAAATGCTTGCCAA 2619175 37 100.0 32 ..................................... GCAGCTTAGTTTTTGAAATGTGATCGCTCTTG 2619106 37 100.0 39 ..................................... CGAACTCATAACTGAGGCCTCACTACTAATTAGTGAAAT 2619030 37 100.0 33 ..................................... ACATCACCGATATCATCACCGCCATTGAAGGTA 2618960 37 100.0 40 ..................................... GCATCGGGTAAAGTTGCCACAGTGTAGCTAGTTGTGCCAA 2618883 37 89.2 0 .........C.A........T......C......... | ========== ====== ====== ====== ===================================== ============================================ ================== 20 37 99.5 36 ATTGCAATTAACCAAAATCCCTATTAGGGATTGAAAC # Left flank : GTACAAAACCAGTCGGGAAATCATCGCCTTTCGTTCCCCTTCTTTTTCGATCCCAATTTTGATGTCGAAGTGAAGCCAATTAAATTAGATCATATCGTGGTAAATGATCATACCGATCGCTGGGATCAAGCAAACATTCATGATTTTCGCGGAACCTATGGTGATTACGTTTTGAGTAAGGTGTCTAAAGTTTTTCCAGAATTGCAGCGATCGCTATTATAGGATTTGAAGCTATTTCTGTACATCCAATGCGCGGAAGGGTAGGTGTACAAATTCCACAGTCCGAAAAAAGCGCTTCTATCCCAACCCCAGCAAGCATTTCACCCCATTAATTGCCCAAACATCATCCGCGCAATGTCTGAAACGCTTACAAAAAGTGGGTTTCAGTCTTCAATCTTTCCCGAACTCTTCCCAAAGGAATTTTCTAATGCTATGATTACCCTAGATTCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGCTTTCAGCCTGCCGCG # Right flank : CAATAAAACAGCCGTTGAATGGGATTCCTTGAGAATTTAACTAGACTACTTTCCAATACAAAATTTGCTGAAAATTCTCTCTAAAACTGACTCCGTTACTTCTTCTCCGGTAATTTCTCCTAAAGCTTGAATTGCACCTCTTAAGTCAATTGTCCAGAAGTCAAGAGGGAACTGCTGGGCAATTGTTGCTTGTACCTGTTCCAAAGAAATTTTTGCTTTAGTTAAAGCTGCTGCCTGCCTTTGGTTAATGGCTAAATCCATATCAGCCGCTTGTACTTTTCCAGATTGAGCTATCTCTAAAATTGCTATTTCTAAAGCATCAATACCTTGATTTTGGGCTGCGGCTGTAACAATTTTGGATTTCGCAACTTGAATTTTAGATTCAATATTTTTTCTATCCTCTTCTTGTAATAAATCGATTTTGTTAATTACAAGAATCAACGGACGGTGTTGCACCTTTTCGTAAATTTCTCGATCGCCTTCTGTCCAACCTGCGGAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 8 3034156-3034479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040272.1 Nostoc sp. C052 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 3034156 35 100.0 36 ................................... ATTGCATGGAGAAAGGAAAGCATCATTTGCAGAAAA 3034227 35 100.0 37 ................................... TATTTTTCAGCGGAAATAGTATGAATATTTCTGGAGG 3034299 35 100.0 38 ................................... AAATTTATCCCTCTGGTAAATGCAGTCAACACCTGTGC 3034372 35 100.0 38 ................................... TAGTTTTATTAACTCTCGGAGGGTTACATACCTTCAAC 3034445 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 5 35 100.0 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : CAGCATTTATACCTGTGCGGATTTCACGAATTTGTAGGTTAGCTCGATTAGTTACGTCTATATAGCCGCCACCATGCTGATCTGCTATCTCTGCGATCGCACGGCACTGCTGACTAGTAATAATTCCACCTGGTATTCTAACGCGAGATAATATACCATCTGCGGCGGGTATAGCATAAAACAAGCCTGGACAAGTAGCAAATCCAGAAAGCAAACTTAGAACTCCTTCCCCGTGCGACGCAGGGAGTAGACGGTGAGTGTGTCTTGAGGACATCCTGAGAGTTGGCATTCTGACTTGGGTAATCCCATCACAGCTGCGGCACAGTCCCGGAATTTCACCGGAGTTTCCCAACTCTCAGCTTTAGTAATTTAGATTTTGTTTAGGTTATAGATATCAACCAGACATCATCCAGATAATTATCTTACATTACTATAGCCATAAATTTTACCTGAGCTTATCCACTGATGTGTTAACGCTAGTGCGATCGTGCGGACTTATA # Right flank : CCCTACCCATTTAGAAGCCTTATGCAGACAGAGTTACAAATACCCATTTTCGCGGGGGGTCTAATTTATCTGTCAATAAGCTACTATTATTGAGAATTTAGCCCTGGTAGACCCTTCTCAAAAGCTTACTCAGAAAGATTTTCGCGGGGGTCAACGAAAGAATAAGGGTTTTGGCGATCGCTATACCCCCGCGAAAAACTTGCGTGTGCAAAGTCAAAATAAATACTTTTGCTTTCACCAAGAAACTTGTGATTGAATTGTCAAGGTTCTGTTATTAATGAGCGCGAGAATAACATACTACTCTTAAATTATCAAGTCGGTACTAATTCACCAGGACGCAACTTTGACCACTTACCCGTTTCCCGCTTGAAGCTCAGACAACCAACAACGTCCCATTCCATTTCAATTACATCATCTTGAGTCCGAATGTTGACATTGATCGAAGGTTCATTCGGATCAAAATCTGGTGTTTCAGTCAAGTGAGGCTGTTGGTGCTGCCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 9 3867866-3865815 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040272.1 Nostoc sp. C052 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3867865 37 100.0 34 ..................................... ATTGCAAATTTTGTGTTTGCATAATCAGGATAGA 3867794 37 100.0 33 ..................................... ATACTTTCCACTAGCTTTTAATTTTGCTGACAT 3867724 37 100.0 35 ..................................... CCTTCTTCTAATGCTGAATAAGCTCCAGTACCATT 3867652 37 100.0 34 ..................................... ATATTACTACTACCAGTAGAGATCAATACATTAA 3867581 37 100.0 34 ..................................... TCAAAGCAATGTATGGCAACCATGCCGACTTTAG 3867510 37 100.0 35 ..................................... ACAAGAAAATGTGGCTTAACCCAGATGGCTCATTC 3867438 37 100.0 35 ..................................... TTCTATATCTTGCTGGAATTCCTCAATCGAACTAA 3867366 37 100.0 33 ..................................... TTGGAATGAAAAGCCCTCTTGCTCAAGCAAAGT 3867296 37 100.0 37 ..................................... AGCAAAAGAGGTAGGGCTAGAATCTAAGCTTAACTTC 3867222 37 100.0 35 ..................................... AGGCGAATAGCCCTCCTTCTCTAATGCTCCAGCAG 3867150 37 100.0 36 ..................................... TACTGATCGGCAAGGGGACTTGATTAAAATCTGGGA 3867077 37 100.0 35 ..................................... CCGTCAAGAGTCGGCACTCAATGGAACTGATTTAA 3867005 37 100.0 34 ..................................... TTGAGTATCTGTTCTCTCTCGTTAGCACTGAAAG 3866934 37 100.0 34 ..................................... AAATGCAAAGATTACAGCACCCGGTATAAAACCT 3866863 37 100.0 34 ..................................... ATTGGGATCGCCCCCACCAGGCCCAGTAATTTCC 3866792 37 100.0 37 ..................................... TTGCAAAGCAGCTTGCTGACTTGGATCTAGCGTTACA 3866718 37 100.0 35 ..................................... GGAATTTTCAGGGGTTGAGCATAATGAAGAATATT 3866646 37 100.0 34 ..................................... GTTGTAAATTGGGTACATTGAGAAAAAACGCCAA 3866575 37 100.0 33 ..................................... GTCGCCTGAGAGACTGATTCTCTTCTCTCAGGC 3866505 37 100.0 38 ..................................... AGTCTCTCCAGAAGCAGTAGAGTTGCTGGAGGAGAAAG 3866430 37 100.0 34 ..................................... TTGTCCTTTTTTCAGTCCAAGACGGTTCTTAATT 3866359 37 100.0 34 ..................................... ATCTGAAAATTACTGCGAGGTAATCTGCCAAAGA 3866288 37 100.0 38 ..................................... AATAAATCACCGTTGCCACCTACAAAGATGAACGTGTG 3866213 37 100.0 36 ..................................... AGGTATTGGTAAGCCATCAATTATTACAGCTTACAA 3866140 37 100.0 34 ..................................... TTCGATTTGGGTGATTTTACCAAGAGCTACAGAA 3866069 37 100.0 34 ..................................... TTTGAGCGATTAAAAGCTTTCTGCTCATTTCTTA 3865998 37 100.0 40 ..................................... ATTTCGTCCGAAAACTGAACTGTTGGAATGGCTGGAAGAG 3865921 37 100.0 34 ..................................... CAATAACAACAACTGCAAACAAGAGAAATAAAGT 3865850 36 86.5 0 ...T.........................TC.-..T. | ========== ====== ====== ====== ===================================== ======================================== ================== 29 37 99.5 35 ATTGCAATCAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CCGGACATAGCAGTACTACTGAACGCATCCTTCAGAATTTACATGAATTATTAGAGCGATCGCTCGGACATCCTTATACTCTAAAGGTGATTGATGTTTTAAGTCATCCAGAACAAGCGGAACTCAATCAAGTTTCTGCAACTCCTACCCTTGTCAAAGTTTGGCCTCACCCAATTCGGCGAATTGTTGGAGAGTTGGATCATGTAGAAAAGATTTTACAAATGCTAGCTGCTAAGGAAACATTTTAAATAATCGACTAATTTTCTTGCCAAATGCGCGAATGGGTAGGTGTTGGAGAAGGGGTAACAACAAAAATGGCTAGCTCGTCGTATATACAAGGATTTCAGGGCTATATCATCTTTAAACTATCCGCGCACCTTATATAGACTGACTTTCAGCTATTTACATCTAGCACAATTACCACTCCTTATGTTATGATTTTCGCATTCGCGCTATTGAACCTTGAAAACCAAATAACACAGAGCTTTCAGACGCCAGCC # Right flank : CTATTTTAATTATGGCTAGTATTCACGCACCTATCCATCTTCAAATTTACGAACGCGAAGGAACGCGCTGGTTTTTTCACGGTGGCAATATTTTTTATAACCCTTGTGGAGTACCGACTGATCTAAATTCGATCCTGCAAAGGAATGGGTTAACGAGAATAAAAGTCGTAGTTGAACTATTTCGCGTCAATGGCGGCAAACCCGGTTTTTACTTGGCTGATATTCAGGAAAAAAAATACTTCTACTGTGGACAAAAATGGGAAGATGTTAAAGCCAAACTGCGATCGCTCCGTATTGGACGAGATAATCCAATGGAGCATTAATATTTTCTACCCACTTTATCGATTGCTGCTTGCAAAGATACAGATTGCAATCAACAGTAGAGATTGAAACAAAGTATCATAGGGATTTGACTTAATTGAGTATAAAAAAATACAAATCATAGCAACATAGTCATTTCACATCCAGCTTGAGGGCTGTGATATTATGGGAGACTGCTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 10 6669720-6670041 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040272.1 Nostoc sp. C052 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 6669720 35 100.0 37 ................................... ACGATTCGGGAGAACAAACCGAATTTTGACTTTATGG 6669792 35 100.0 35 ................................... TTCCTTGTTGCAAACATTTCTTTAGCTGGCGATCG 6669862 35 100.0 40 ................................... TTCCCAAAGACGGATAGAGACATTATCCTTTGGACGATAG 6669937 35 100.0 35 ................................... GGGGATGCTGAAGCCCGTGAAGATTGGCTATCTCG 6670007 35 97.1 0 ...............C................... | ========== ====== ====== ====== =================================== ======================================== ================== 5 35 99.4 37 TGAGTCGTGGCTTTATGCCGTTAGGCGTTGCTCAA # Left flank : TAGTAAGACGGTTCGGTTGTTTATTTTTGGGAGAAAGCGACCAGTTGATTAAAACGATCAAACTTGTCTCGGAAGATTATCTAGAGGGAGTGAGACAGTGGGCAATTATAGATAATAGAGGCAGGTTAACCTTACCCTATTGGGTTGACCATGTGGGGTCAAGAAATACCCGATTTTTGAGGTATCGGATTGAGGAAATAGATAGATTATCACCTCCTGATTTAGCCTGGACAATGGTTCAATCTCCGATTTGACAAGTACCCTGCTGGCGAGGAGAATTGAGGGTAAAAAATGACGCAAAAAATTACAGGGTTAAGGGATATAGAAATTTAGATAGAAAAAGGTGCTTGCAAATCCTTGAAAGAGTTAGGAGGATTGAGTTATAGAGGTTGAAGAAATACAAGAAATTGATAAGTTTTGTCTTTTTGGGATCTCCGGCTAAGGGGTACTTGTAAAATTGTAAGTGAGCCTTCATCACCCAAGGGTTTTAGCCTTTGCTC # Right flank : ATCTTGCAAGATGAAGCGGCTAATGTTATTAGTTAGGCGATCGCCTGAAAAACCTTTGCAATTGGCAGACTGTGATTCCTTTTTGGTGCGATGCCTGCGGCAAGCTACGCTAACGCATTCATCAACAATTAAGGGACAATCTTAAAAGATTTAGTAGCTAATTTGACTTTGAATATATAGGTTTTGTGGTTGCCACATAGCACAATGCTAGTATTTTCACACTTAACGACAGGCAAGATTGAAGTGTAGAATTATACCAACCCTCTCTTAACCGAAAGCCGACCCTTTTATGTCAGAAGCAATTGACAAGAAATCTTTGAGTGAACGTGATATTTGTACAAAGTACATTACACCTGCTCTAACTAATCGGGCATGGGATATCAACACTCAGATTCGTGAGGAAGTGACGCTGACAAAAGGTAGGGTGATTGTTAGGGGTAAGCTTGCTAGTCGAGGTGAGCAGAAACGCGCTGATTATGTGCTGTATCACAAACCCGGTG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAGTCGTGGCTTTATGCCGTTAGGCGTTGCTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 11 7024611-7022841 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040272.1 Nostoc sp. C052 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7024610 37 100.0 34 ..................................... GCCGATTTGCGAGTGGATTGATTGCTTGCGAAAG 7024539 37 100.0 38 ..................................... TAATCTTCTAAATGCTGGATTAGAGCCTGCGGGAAGAG 7024464 37 100.0 34 ..................................... GTAGGAACTCCTAATGCTGATTTTACTTTAGCAG 7024393 37 100.0 35 ..................................... CGTTTAGCTAATTCATCTGCATACACTACTCCGTC 7024321 37 100.0 32 ..................................... TCTCCCTGATGCTTATATATCCAATTGATTAA 7024252 37 100.0 33 ..................................... AAAAATGCCATTGCTGCGGCGAAAAGGGCAATA 7024182 37 100.0 35 ..................................... ATGGAGTAATACTTCTAAAGTATCACCTAATGGTA 7024110 37 100.0 34 ..................................... TGTTTCAGACGCTATTCGTGATTTGATAAAAAAG 7024039 37 100.0 35 ..................................... AGGATTAGTGCGGGAATGTGGGTAAGCGTAGCTAT 7023967 37 100.0 36 ..................................... TCGATACAAGAGACGGTTCATACCAAGTATCAGAAT 7023894 37 100.0 37 ..................................... ATCTCAAAAAGAATGCGAACTAGTTGCTACAAAATTA 7023820 37 100.0 36 ..................................... AAATACGCCAAAAGTCTTTTATATGGAATTATCGTA 7023747 37 100.0 34 ..................................... TCACTTTCCCCTCGACATCCTGGATTAACAAGTC 7023676 37 100.0 33 ..................................... GTATCGCCCAAACTGACATTTGCATTAGATGAA 7023606 37 100.0 34 ..................................... ATAATTTCGGATTCTTGTAAGCTTCCGAATTCGA 7023535 37 100.0 34 ..................................... TGGTACTGAAACAAATGTAAATTTTACGGCTGAA 7023464 37 100.0 36 ..................................... TCAAAACACACAGATCCCCACTGTGTCTGAGAATTT 7023391 37 100.0 35 ..................................... AACATCGGGGCTTGAGTTATCCTCCATCGTCAATG 7023319 37 100.0 34 ..................................... TTCAGAATTTGCTCTACCCTCTGAGATTCCTGAA 7023248 37 100.0 38 ..................................... AGCAACACGATTAACCATGACTGGATCTCTTACAGCCA 7023173 37 100.0 35 ..................................... TGTGATGGTGGCTCTGAAATAGTTCGATTTATACA 7023101 37 100.0 41 ..................................... GTCTCCCAATTCAAAGATTAAATTGTCTGTGTAACTCTCAA 7023023 37 97.3 36 ...........T......................... AAATATTTCTCGTAATAAACCTCCCATCTGTTTTTC 7022950 37 100.0 36 ..................................... ATCTCTATAATTTCTGCATCATCTTTGAAACCTGCT 7022877 37 97.3 0 ...................T................. | ========== ====== ====== ====== ===================================== ========================================= ================== 25 37 99.8 35 ATTGCAATTAACCTAAATCCCTATTAGGGATTGAAAC # Left flank : TTATGGCGTTCCTAATATGCCAGGTGCAGTACCTTGGACAGCAACTCAAGCACTAAATAACAGTACATTACCTTATGTTGTCCAGTTGGCGAATTTGGGAATTAAAGCACTGGAAGTTAACCCAGCCTTAGCTAAGGGTGTGAATGTGCAGAATCATCAATTAGTACATCCGGCTGTACAAGAGGTATTCCCTGACTTGGTAAATTAAGTGTCAGGCGATCGCTTATTTTAATGGTGGTAGCGATCGCTAATTAGACTAATTTCCTTGCCTTATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGAGCAAAAAAGGCTGTAGGCTCCATCTATACAAGGCTTTGAGGGCAATCATACCTTTAAACCATCCGCGCACCTTATAGGGACTGCGTTTCAGCGATTTATATCTTGTGCTATGACTATTCCCTGTGTTATGATTTGCTTATTCGCGCAACCTTACCTTGAAAACCAAATACAGCAGCGCTTTCAGCTTTCAGCG # Right flank : AGTTCATACAAATAAAATCTAACTAATGAGGGTTGTAATTTGTCATTGGTAATAGGCTAAAAAGTCTTTACCTAATATAGTTACGTTTATTCGTGCTGAATTAATTGTTGACTCATAATTTAATTATTGAATAAATATTAAAGCAGCCAAATCCTATAAGTTACTACACTAAATCGATAGAGTTTTAGTATTATTAGAAAAACTAATTACGGAAAAAGAAGTATTGCCATTAAACAGTAAATCTGTCATATTTAAGAATCTCATTTAAAAGCAAAAGCATTTACATTATGTTAGCGACATCTATAAAAATTCTTAATGAGCATTATCAATCTCTCAACAACGAGGGTATAGATGTCATTCAAGGATTAACTCAAAGTCCAAAAACCTTACCTCCAAAATATTTTTACGACGATCGTGGCTCAGAATTATTTGAGCAAATATGTGAATTACCAGAATATTATCCAACAAGAACAGAAGCATGGATTTTGCGCCAATATGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACCTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //