Array 1 162079-160907 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYC01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain W392 NODE_1_length_496662_cov_167.938031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162078 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162017 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 161955 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 161894 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161833 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161772 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161711 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161650 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161588 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161485 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161424 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161363 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161302 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161241 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161180 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161119 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161058 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160997 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160936 29 96.6 0 A............................ | A [160909] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179581-178211 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYC01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain W392 NODE_1_length_496662_cov_167.938031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179580 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 179519 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 179458 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 179397 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 179336 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 179275 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179214 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179153 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179092 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179031 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 178970 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 178909 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 178848 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 178787 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 178726 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 178665 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 178604 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178543 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178482 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178421 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178360 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178299 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178238 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //