Array 1 1293-871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIII010000003.1 Bifidobacterium sp. DSM 109957 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================ ================== 1292 37 100.0 27 ..................................... TTGCCGCGTCGGATGTGAGAACCTTCT 1228 37 100.0 28 ..................................... TCACCACATGCAGCAGCCAGGGCACCAG 1163 37 100.0 27 ..................................... GCCAAGTCACGCATACGCTTCGACAAG 1099 37 100.0 27 ..................................... AACGTGGCATCATTGGATGTTACGTCG 1035 37 97.3 27 A.................................... TTGGGTTCGACAGATAGTCGGCGACGG 971 37 100.0 27 ..................................... ATCATTGGCTTGTTCCTTTTAGTGTTG 907 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================ ================== 7 37 99.6 27 TCAAGCGTATCAAGAAGGGCAGATGCTAATTCCCAGC # Left flank : AGTTCAATGATATTGGATTGACCATTCCGAGCTCCTTGAACGATTTTGCTCAACAATTTGGATTGTACTGCGAGAAGAGAATTGACCATCTTGAAGTTCCTCTTTTTGAGGGGAAATCATGAAAGTTGATGAGGATAGCGGCGGTATGTGGTGTTTGGTGATGTTTGATTTACCGGTACGCACAAAACGGCAACGACAGGAAGCTACGCAGTTTCGTAATTTGTTGCTGGATATGGGGTACTCAATGGTGCAGTTCTCGGTATATGCTCGATACACGCCGACGCAGGCTGGAAACCGAACAACGGTGAAGATGGTGAAAGACAACTTGCCAGCAAAAGGGCAAGTCCGAATATTGCACATCAGTGATCACCAATGGTCGAAGGCGTTGCGTTTTTCCAGTCGAAAGGTGGATCAAGAGGAAGAATCTCCCAGCACGCTTCTGCTTTTTTGAACGGGAAAACTACTGTAAACCATTGAAAATAGCCCTTCTTAACACGCCA # Right flank : TGTAACCGAATGAATATTTGATTCGTTGAGGTCCATGGTTATTGCGGTTGGAGGCCGTCGCGGGTTTTGTGGGTTATTTCGTTTCGGGGCCGGGGTTATTGCGGTCGGAGGCCATGGTTGGTTAGGCTCCTTTCACCATGCGAGGGACGTGTGGTGAAAGGAGGTACCTCCAATGGTACGGAAAATCAAGGCGAAGACGATCCTGCGCCTGGACGAGCGGGGTCTGTCGGGCCGCGCGATCGCGAAATCCCAGGGAATCGCGCGCCGAAGCGTCGCCGAGACGCTCGATGCCGCGAGGACGGCCGGCATCGGCTGGGCCGACGTCGCCGGCAAGACCGATGACGAGGTGTACGCCCTGTTGTTCCCGGGCAGGGGCGGACATGAGAGCGTGTACGAACAGCCGGACTGGGCCGGGGTTCATCGCGAGCTGGCGCGCGTCGGCGTGACGTTGAGGATCCTGCACGGCGAGTACATGGACGGATGCCGGCAGACCGGGAAGC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAAGCGTATCAAGAAGGGCAGATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2663-3724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIII010000001.1 Bifidobacterium sp. DSM 109957 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2663 36 100.0 28 .................................... ATGTCCTCGAAGAACCACGTTTGCTTGT 2727 36 100.0 28 .................................... ATGTCCTCGAAGAACCACGTTTGCTTGT 2791 36 100.0 28 .................................... TCGTGTATTGTGCCCAACCGCTCGTGGT 2855 36 100.0 28 .................................... TTGTCCAACGTCAGACCATCGCCAGCAT 2919 36 100.0 28 .................................... ATTAATGACGCCACGTGTGGCGCTTTCG 2983 36 100.0 28 .................................... CTCTCCATACGTCTCGCTGCCGGTATGG 3047 36 100.0 28 .................................... TGATGATTGGTCTCCTTGGTTTGGTTGG 3111 36 100.0 28 .................................... GTCTCCCGTCAGTGGATGAATTGGACTC 3175 36 100.0 28 .................................... GGTTCGCTGGCGATGCGGGTGAGCTGGG 3239 36 100.0 28 .................................... CCATTTTTGGTTTTACTGCTTCTACGAT 3303 36 100.0 28 .................................... GCATCGTCTTGCGAAGGACGCTTCTGGA 3367 36 100.0 28 .................................... CATAGTTCGTTGCTTCACGGACGATAAA 3431 36 100.0 28 .................................... CGGGCCTCGCGGATGGTGATTCGCGCCG 3495 36 100.0 28 .................................... CGACAAAAGCGCGGTGACCGTCTGGGAG 3559 36 100.0 28 .................................... TCCATGGTTTGTCCTTTCGGTTTGTTTC 3623 36 100.0 29 .................................... GTATTTGTAAGTATTTTGCAGCTAGGAAT 3688 36 75.0 0 .....T...........A.G...A......AGTTC. | A [3714] ========== ====== ====== ====== ==================================== ============================= ================== 17 36 98.5 28 CAAGCGTATCAAGAAGGGCAGATGCTAATTCCCAGC # Left flank : GATACCGCGCGGCCTACATCCGCATGCCCGACCTCGCCGAACAAGTCCTGACGGCGGCGGGCAAGCCGGGCGGCGTGCCCAAGCTCGTGCGCAAATACGCCACCTACAACCTGCTCGCGATCGACGAATGGCTCGTCGACAAACCCGACGAACCATTCAAACGCTTCCTCCTCGAACTCATGGAGCTGCGCTACGACACCGCCAGCACCGCGTTCGCCACCCAATTGGCGACCAAGGAATGGCACAACCGGCTCGGCGGCGACACCATCGCCGACGCGATCCTCGACCGCATCGTGCACAACACGATATGGATCGACACCGGCGAATACAACATGAGACAACGACACGGACAAACCACGCTCGACAACTAGCCAAACAGGCCGGTGGCATCCAACCAATCCGCCACCGGCCTCCCCACACCATACCCCCGGCCTTCAAGCACAATAACCAGTGACCTCAAACGCTACAAATACTCAACCGAACTGGCAAGAATCGCGAGT # Right flank : CCTACACCACGGCTAAGCATGTTCGCACTGTTGCAAGCTTATCAGGCGGATACTAATTCCCATTTTCCAGCACTTCATTGAGAGTGATGAGTTAGGTATGATGATTACGATGTCATGCAATGATTGCTGGTCTTTGACTCTAATGCTTTGCTGAGGTACTGAGAAGTGAGGGGTTTGTTGTTGTATTGTAATAGCTCTTATGAAGGGATTGTTCCTGCGTGCAATTCGGGTGATGACATGCATGCGTATCCTGAAGCTTATTTGGCTGACGTGGTGGAAAATCAGGGGGGAAGCTATTCGATTTTGTAGCGTTTGCGTTTCCGGACAAGGATACGGTCGATTTCATTAATGCTTATATGAACAGCAAAACTCGAAAGAGCATTGACCAAGCGCAGGCTTACGTCAATACCATGAGTGCTGAAGAATTATGGGAGTATTTCTGTAAAACCGAAGGATATGTATTACGTCCAGGCGAAGCGCTTGCGGGGTTTATACCTGAC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCGTATCAAGAAGGGCAGATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //