Array 1 609-1522 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWM02000035.1 Thermoproteus sp. CP80 NODE_169_length_14549_cov_7.84288_ID_1659038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 609 25 100.0 44 ......................... GCCTAAGGATTCATCATGGGGGGTGGTGAACGTGGAGATTAAAG 678 25 100.0 43 ......................... ACCCCAGGCCGGTGGGGCTCAGGGCAGTGCGGCAATTGAAACC 746 25 100.0 43 ......................... TAATCCTCATTGTTGGCGAGGAACCTGCCTGTAATGGCTATGC 814 25 100.0 42 ......................... GTTCCCCTGCACAACACCCACGAAAACAATGCAGATACAGGA 881 25 100.0 39 ......................... TGGCCAGGCCTTCTACGTCAACACATCCTACACCCCAAT 945 25 100.0 45 ......................... CGCATAAACTCCTCATTCCTTATTCAACACGGCTACGCAGTACCC 1015 25 100.0 51 ......................... TAAAATGTTTACTAGTCAGTATGATGCCTATAGAACCACTATAAGAACGTG 1091 25 100.0 39 ......................... TATTTCAGATGTTGCAGTATCCTCATCGTAATTGTACGG 1155 25 100.0 48 ......................... AAACATAAGTGGAAATGACGGAATACTTAAAAACCCCAGGGGCACCCT 1228 25 100.0 40 ......................... CATGAATAGCCTGCTTCCCATGCACTTAGCATGTTGGTTT 1293 25 100.0 40 ......................... GGTTGCTGAATTGGCTTGATATTGTCGTTGCAATGCTACT 1358 25 100.0 48 ......................... TTCAGCATCCCAAACATCACGGTTGTAGCCCCAGAGGCCCAGAGTAAT 1431 25 100.0 42 ......................... ACTTAACTTACTCATTGCTGGTTACCTGGCCTGTCATCAGGT 1498 25 84.0 0 ...................G..TAA | ========== ====== ====== ====== ========================= =================================================== ================== 14 25 98.9 43 GAAACTCCCTAAAGGGAGTAGAAGG # Left flank : GAGTACAGTGTGCTGAAGCTGGTTGGTGAGGGTGTTGAGAAGGCTAAGTATATACATAAGGAATACAACTCAAGGTTCTGCAAAAGCAGGTATAAGGAATGCATATCAATGCCGACGGTGGAAAGGATCCTGGTTAAGTTAAGGAGGAAGAACCTAGTCAAGTTTGAGGCATCAGGTAAGGCGTACAGGTACTACTTAACGCCTGTAAGTGTAATGCTAGTGGGCAAACCAATGGAGCAGCCACAAAATAGTAAGAACAACCTGGACCTAAGCGGTTAGTAAACAACGAGAAGGATCTTATTCTCAACTCCTTGGATTATTTCATCGGAGGCCGGATATTATTATGGAATTGAATTGCTCTTTAGAGGTTTTCAATTCCCTCAATGTTAAGTCATTAGAGGGATTACATACCATAAATGAATAACCAGAGAAACCCTCCAATGAAAACAAAAAACACCATAAAGAAAAACTTAAAAAGAGGTAAATAAAGCAACGATACG # Right flank : AATCATGGGATGAGTAGATGATCGATCTTTTAGTCTGGGCAGTTTTTACTGTAGTAGCATGCTTTGCATTTGGCTTTGTTTGTTGTTTTTGGTGGTATTGTTTGCTCTTCTAGGTGTTTCTTTAGCTCTGTGATAAGTCTTGTGGCTTGCGTTCTTAGGTTTGGTGTTACCTTAATTGTGATGATTTTTCCCTGTTCTGGGTTTGTTATTATTACTTCGTCTACAGTAGTGTTCATGGTTTCTTCAACTGCCATAGCATAGGCTATTGCTTGGATTAGTATGTGATTGTACCTTATGTATAATCCTCTTCTACTTACTGCTGTTATCTTGGACTCTACGACAGAGACGTGTTTACCCTTAACCAAGACAGCATCAACCTTGCCAACTATGCCAAGTTTCCTCGACTTAACAGGGACCTCAGTGATTAACTCCCCGTTGAACCCATTACTCCGCAGTATTTCCTTCAACTTCTCGATGTTATTAATACCCTTGGCGTACTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACTCCCTAAAGGGAGTAGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 807-1301 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWM02000004.1 Thermoproteus sp. CP80 NODE_14_length_69361_cov_86.4489_ID_1681154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 807 24 100.0 48 ........................ TGGACTCAATGTGTCCAGCTTATACCACGGCTCGTAAATATGCCTCCA 879 24 100.0 45 ........................ ATATCAGCGCGGTCTAGGCCGTTATCCTGGCCAAGCTTTATACAC 948 24 95.8 46 ..................C..... TTCATACTCAACCACACCCACGTATACGAGCTCGTGTACCTGATCG 1018 24 100.0 42 ........................ ATTCAGCGTGCTGAAGGAGATATCGAAGAGCATGCCGATACC 1084 24 100.0 37 ........................ AAACCCAAAACCAAGCCCAAGCTCAAAACCAAGAACA 1145 24 95.8 43 ..............T......... TGAGGGGGTTGAAAGGGCCTAAATACAGGCGAATATATTCCAG 1212 24 100.0 42 ........................ CAATAATGCGCTCGGAGCCGCCCGCATAGTAGTAGAGCACGT 1278 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== ================================================ ================== 8 24 98.4 43 GCATCTCCAATGGAGAATTGAAAC # Left flank : ACCGCAGGCCTTCCGTCGATCAGAAGCGGCCAGACTGTGAAGGGCTTCGGCCCCCTCTCCGGGAGCCCCGGCAGGAGGCGGTGCACCACGGAGTGCGCCAGGTAGCCCGAGAAGAGGTTGATCGCCACCCCCCTCTCCAGGTTGCCCCTGAAGGCCACCACAGACATGGCCGTCCCGAGGCGCCGCGATATAAAGGATTCGACGCGCCGTCGGACGGCGTTTATAAAACGTCGTGCAGATTGCGCTTTACATCCATCGAAGCTGTCCACTGCTTCGGCGAGCTGCGTACGTAAAGCGGGGATCCCGTTTATAAAACGGCAGCTTCCCGGCGCGGGCCGACGCCGAGACGTAAAAGCACGCAGATGCGCGCATCTGCACGCCCGGCGCACTTTACGTAGAAACAAGACGCGGCGACCCGTGCAGCGCAGTTAGACCTACATCACGCCGAAAGACGGATAGAAAAGCTTAAATGCCTATACATTCATGGTCCAAGAAACCCG # Right flank : TTGCCTATGTTGGGTTCTGCGGCGGCCGCGGCGTCGCGTCCTGCGCCGGCTTGAGCACGGCCTCGGAGGCGGCATCCTCTTCGTACTCCTCGCCGTCCTCCCCGCGGAAGACGGCAGTGCGTGTGGGAATCGCCCCAGAGCTCCGGCTGGAGGCCCGCCGGCTCCGGCGCCTCGTCCACAGTCCAAGGCCTCCTCCAGCCCCGCAACCGTCTGACGCCTCTCGCTGGGCACAGACGCCGCAGGCGTCTTCCGCGTGGGCCCTGTCTCCCCAGGATCCGTTGGCTCTGCGCATTTTCGCAGCGCCCTACTCCGACGCTGGGGCGCCCGTCTTCGGCGGCAAGTTCATAGATGTGAGGCCCTCGGAGGCTCGTGGTCGCGTCTGCGCTGCGGTCTGCCGCTTGCGTCTTGGCTCTGCGCGGGGGCTATGCCTTCCCATAGGGTGCACAGGACGTGCGCAGAGCTGATTGGGATATCCGGCGACGTGGCTAACTTCGTCGATA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCTCCAATGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //