Array 1 1086319-1087873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYGB010000002.1 Escherichia coli strain COL3 ctg.s1.000000F.arrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1086319 29 100.0 32 ............................. CGCAGGGGGTTATTGAGTGGGACGGCAGGCGC 1086380 29 100.0 32 ............................. TGCCCGGCCTTGATCCGGGTGCGGTGATAAAC 1086441 29 100.0 32 ............................. CGCCAGGCGACATTCACCGGGCGTCTGAGCGC 1086502 29 100.0 32 ............................. CGGGCTAGTCCGTTGTGATCGCTGCGGCCACG 1086563 29 100.0 32 ............................. ATTATCAGCGTTTACTGAATATCGATCATTAC 1086624 29 100.0 32 ............................. TTGGCTGGGGCCGGAATCCGGCTGGCGGGGAT 1086685 29 100.0 33 ............................. CGGATCGTGTGCGTGCCGTCACTGCGGCCTGGC 1086747 29 100.0 32 ............................. ACCAAATCACAAATTTTCGCAAAAGCCTGGGC 1086808 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 1086869 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 1086930 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 1086991 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1087052 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1087113 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 1087174 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1087235 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1087296 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1087357 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1087418 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1087479 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1087540 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1087601 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1087662 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1087723 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1087784 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1087845 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAACCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1103394-1104155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYGB010000002.1 Escherichia coli strain COL3 ctg.s1.000000F.arrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1103394 29 100.0 32 ............................. CCGTGCTCAATTCAGCACCCGACATTGCGCGA 1103455 29 100.0 32 ............................. TCAATAATTTAGTGTGTATTAAATTCAATTAT 1103516 29 100.0 32 ............................. AACAACCTAAAAATTCGGGACTATGGAAAAAA 1103577 29 100.0 32 ............................. CCGCACATAAACAGACGGCAGCGGGTACAGGC 1103638 29 100.0 32 ............................. TTCCGGGGCCGTCGTGTGAAGGGGTTAACGCG 1103699 29 100.0 32 ............................. GTGTTGTGTTTGTTGGTAGTTGGCAGGAATCC 1103760 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 1103821 29 100.0 32 ............................. ACGACGTTTTTTTTGAAGACATTTTGATTTCT 1103882 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 1103944 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 1104005 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 1104066 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1104127 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //