Array 1 291242-291657 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MKNP01000009.1 Listeria monocytogenes strain NRRL B-33373 PROKKA_contig000009, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=============================	======================================	==================
    291242	    29	  96.6	    34	.G...........................	TCTGAAATTTTAATCATGGATACAGATGATGTAA    	
    291305	    29	  93.1	    35	AG...........................	CACGGTGTCTACAATGAACATCTGTCAAAAGACTG   	
    291369	    29	  93.1	    35	CG...........................	ATGTTTGTCGTACCTAACCATCTGATGGATCAATG   	
    291433	    29	 100.0	    38	.............................	TAGGCAGCGTCAGCAATAGTGGTGAAAACAGGTTCTAC	
    291500	    29	 100.0	    36	.............................	TCGACATAACACATATATTTAAAATCATTAAAACTA  	
    291565	    29	  96.6	    35	..............T..............	GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT   	
    291629	    29	  75.9	     0	A.....A.......TCA.A....A.....	|                                     	
==========	======	======	======	=============================	======================================	==================
         7	    29	  93.6	    36	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                      	       

# Left flank :   GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGAAGTTTGGTGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTCGATGTTTTTTGGTAGGTCGACAGAAATACCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCG
# Right flank :  TCTCCTCCATACACAACTCCACCATCCATCAAAATAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTA

# Questionable array : NO	 Score: 5.50
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:81.48%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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