Array 1 65152-63675 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDOJ01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE492 492_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65151 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65090 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 65028 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64967 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64906 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64845 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64784 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64723 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64662 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64601 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64540 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64479 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64418 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64356 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64253 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64192 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64131 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64070 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 64009 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63948 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63887 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63826 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63765 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63704 29 96.6 0 A............................ | A [63677] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83204-81284 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDOJ01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE492 492_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83203 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 83142 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 83081 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 83020 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 82959 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82898 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 82837 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82776 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82715 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82654 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82593 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82532 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82471 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82410 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82349 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82288 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82227 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82166 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82105 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 82044 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 81983 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 81922 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 81861 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 81799 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 81738 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81677 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81616 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81555 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81494 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81433 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81372 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81311 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //