Array 1 360613-363226 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDBV01000004.1 Listeria monocytogenes strain ICDC_LM0544 LM0544Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 360613 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 360679 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 360745 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 360811 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 360877 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 360943 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 361009 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 361075 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 361142 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 361208 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 361274 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 361340 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 361406 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 361472 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 361538 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 361604 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 361670 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 361736 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 361802 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 361868 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 361934 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 362000 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 362066 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 362132 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 362198 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 362264 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 362330 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 362396 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 362462 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 362528 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 362594 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 362660 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 362726 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 362792 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 362858 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 362924 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 362990 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 363056 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 363122 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 363188 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [363213,363219,363222] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //