Array 1 22656-22199 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000105.1 Nocardiopsis chromatogenes YIM 90109 contig_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 22655 30 93.3 31 ............................AC ATTGGGGTGACGATGAAACGCGATTGTGGGA 22594 30 100.0 31 .............................. ACGCTGCCGAGTGGGTGGCGGGGCGCCGGTC 22533 30 96.7 31 .............................T TACGTGGTTTGGGTACGGTGGCAGCATGAGC 22472 30 93.3 31 ............................TT GGCGCCCGGCGGCACGATGGCCTCTCGCATC 22411 30 100.0 31 .............................. ACGACGCGAACAAGTACGCCGACCGGGTCTG 22350 30 96.7 31 .............................A CCACGTACTACTCGATTCAGATGATGGTCGG 22289 30 96.7 31 .............................C TCAGCGCCCGGTCGCGCCACACGGCCTCCAG 22228 30 90.0 0 ..........................GG.A | ========== ====== ====== ====== ============================== =============================== ================== 8 30 95.8 31 ATGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : TTCGACGGCCTTCCGGGGGCGGGCAAGCCCATCCCGGACATCGACCGCCCGCGCGACGACCTGTGGTGGGTCCGGCGCAAGACCGAGGAGGAGGGCGTGGCGCCGCTGCCCCCGGCGCTGCGCGTCCGCAAGGAGGCCGAGGAGGCGCGGGCCGCGGCGGTGGGGGCCCGCACCGAGGACGATGCGCGCCGGATCATCGCCGAGATCAACGAGGAGATCGTGCGCACGGTCAAGTTCCACACCACCGGTCCGCCGCTGAACATGATGCCTTTTGATGTCGAAGAGGTCGTTGCCGAATGGCGGGAGCGGAAGGCGGCCGACATGCGCAAGGCAGAGGAGAGGCGCGCCGAACGCGCACGGGAGGCGCAAATGGCCGCCGAAGAGAAGCGCAAGCGCCGCTGGTGGAACATCTTTGGGTGAGGTGCGGCGGGATGGCGGGTCGCTGAGTAAAGTGGTTCAAACCAAGAGGTTGCTTGGCCCATTCCCCCAGGTCAACGAGG # Right flank : CCTTGTCCGGCTGGAGCATGTCCTTCAGGTCGTGACTCTCCGCTCCCCGCACGTGCGGGGGTGCCGTTCCTCGGCTGGACGGGACCTACAGCAGACTCAGGACGAACCCTCCGGCCATGAGGCCCCCACACCCGATCTGCGCTCCCTCAGCAACGCCCGTGGGGTGAGACCGGACATCCTCCGTACCTCCCGGCTCAGGTGGGCCTGGTCGGCGTAGCCCGCCTGCACGGCCAAATCCGCCAAGCGCTGCACCGGGGCGGAGTCGGCCAGGGACAGGAAGCGCTGGAGGCGCATCACCCGTTGCAGCTCCCTCGGGTCCAGGCCGGTCGCGTCCAGCATCAGGCGCCGCAAGTGGCGCTCGGAGACCCCGGCCGCCTCGGCGGAGCCGCCGACCGATGCCGCGGGCGTGCTCAGCGCGCGCAGCGCCGTCCGGACACGGGCGTCGAAACCTCGGCGCGGTCGCAGTTCCGGCGAGTCGCCGTGCCATACCTGCTCGGCCA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43244-42850 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000105.1 Nocardiopsis chromatogenes YIM 90109 contig_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 43243 30 96.7 31 .............................C CCGCAGCTCTTCCACCAGAAAGAACAAGCTC 43182 30 96.7 31 .............................T GCCTGCGGCACCACTGCTCGACACCGCGCGA 43121 30 100.0 31 .............................. GCGCACCGACATGGCCGGAATGCGCCTGCTG 43060 30 96.7 31 .............................A CTTCGTGGACCTGCTCGTCTAGGTCCACGGC 42999 30 100.0 31 .............................. AGAGAGACACGCGTCCTGGTGGTCCGCAACG 42938 28 90.0 31 ........T.....--.............. CCTTCACCAGGGTCTCCCGGGGCGTATCTAC 42879 30 76.7 0 ...........AT.C..A...TC.....T. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 93.8 31 ATGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : GGTGGTGAAGCTGACCCGGGTGGTGCTGCTGGCGCCGCTGTTGGTGGCGCTGGGGATGTGGCGGCGGAGAAGGGAGGCCGCCGGTGCCGGACCTGACGGGGCCGCTGGCGCCGATGGGGAGCGGAAGCCGAGCCTTCGCCGCCCGCCGCTGGTGCCGCTGTTCGTCGTCGGGTTTCTTGCGGCCGCAGCCTTGGGCGGGACCGGATGGCTGCCGGGAAGCGTGTTGGCGGTCGGGGGAGTGCTTCAGACGATCCTGCTGTCGGCGGGGCTGTTCGCCATGGGGACCGGAGTGCACCTGCCGACCCTCGCGAGGAGCGGAGCCCGGCCGTTGGCGCTGGGGGCGGCGGCAAGCGCGTTCATCGCGACGGCGACCTTGGGAGGGCTGACGGCGGTCGCGTGAGAGGACAGGAGGACGCCTCTACGGGTGCGCTACCGTTTCCAGGAGCCTCAAAGTTGCATGAAAGAGGGTTCAGCGCTGAAGAAGCCCCAGGTCAGCGAGG # Right flank : TGCGTCTGGAAGTGCTGTGCCCCGCACCAGCCGGGGTGACAACGAACGAAGGGGCGGTGCCGCGCACCGCCCCTCTCTCGTTTCCGGCTTCCTACGGGTTCGGATTCCCCGCGTAGAAGCGGTCCAGGATGTCCTGCCTCAGCAGGTGCTCCAGCCCTGCCGACCGCATCCTCGTGATCAGTCCCCGGCGGTCCGTGTCCAGCGCCGCCGCGGCCGTGTCCAGATGCCACCGCGCGTCGGCCAGCCGACTCAGCAGATGTCCCCGCTTCGTCTGGGTCTTGGACAGCACGATCGTCTTCAGGTAGGCCACGCGCTCCCTCTTGTGGAGGATCGCCTCCCCGATGTGGTTCGTCTTGGCCGGGTCGAACGGCGGCAGGAACCGTTCCAGCGTGAAGTCCCCCATCCGGTAGACCGGGTTCCGCGTGTAGTCGGCATCGGCCANCGCCAGCATCGTCTCGTCGTGGAACTCCCGCCACGACGCCCGCTGCTCCTCCAGTGCC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5451-5969 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000122.1 Nocardiopsis chromatogenes YIM 90109 contig_122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5451 30 100.0 31 .............................. CGAAGAAGCGGAGCAGCGCTTCGTCCGATGA 5512 30 96.7 31 .............................C AGTCGTCGATCGTGGCGATCATCGGTTCGCG 5573 30 100.0 31 .............................. CCGACCCCCGCGATAATTACTGCAATCCATC 5634 30 93.3 31 ............................GC TTCGGCGGCTGCGCAGGCGTCGGCGTCGGTG 5695 30 96.7 31 .............................T GCGGGAACCGGCTGGCGCGGTACAGGGCGTC 5756 30 96.7 31 .............................G TGACGCGGTCCTGCACCGGCATCATCGCGCC 5817 28 93.3 31 ............--................ CCAGCAGGCGCTTGTCGCGGGTGAGTGAGCG 5876 30 93.3 31 .............G...............C ACTCGTTGCGGTGGCCCTTGGGGTCTCGGCA 5937 30 86.7 0 .............G...........G.A.C | G,G,G [5954,5960,5962] ========== ====== ====== ====== ============================== =============================== ================== 9 30 95.2 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : TCGAGTTCACGGTGACGCGGGTCGAGGACGATGTGGACACGTTCGGGGAGCCCCCGTTCTCGTCCGAGCCGAAGGGGCGGTACGTCGTCGTGTCGGTGGAGGCGCGGAACGTCGGGAACGAGCCCGAGTACTTCGCCTCGACCGATGCCCGGGTGATCGACACCGACGGCAAGGAGTACTCGCCCGACGAGTCGGCCAGCGTCCTGGCCGAAGAGGGCGGAACCCTCTTCGAGGAGGTCAACCCGGGGAGCACCGCTGAGGGGAAGATCCCGTTCGACCTACCGAGCAGCGCCGTGCCGGAGAAGGTCGAACTGAGCGGCTGGACCTCCTTCGAGGACCCGGCGGTCATCCTGATCAGCGAATAGAGGGCTTCAGCGAGCGCTTGTGCGGGTGGGGCGGTAGATTTCCGGGACGCACGAAGGTTCGGACATCGCCCCTCTGAGTAAGCGAAGTGGTTCAAAACAAGAGTTTGCTTGGTGTGTCGTCCCAGGTCAACAAGT # Right flank : CGTGACCCCCATACCGCTACCGACCGATGCCCACTTCCATGAGCCCAGTAGCGGGCGCGGCCGGATAGGCCGCCCACGAGGCATGGGGAGACCCGCCGCTTCAATGGTGTGACGGGCTACCCCACCGGTGCTGATTTGTCTCGGTGATGACTCCTTCCCGGGTCGTCACTCTCGGTGCTAATTTCCTCACCTGTGAATGGGAGCGCTCCCATTTCGCGAACGTTCATCCGGCCCCCAGGAGGAGCGACATGGAAGCGGAAGGACATGGGCCCCACCACCCCGGTCGCCCCCGCGCGCGGTACCCCTCGCGGTTGCGGCGGTGGTTCGGTGCCGGGGCGGCGGCCCTGCTCGCCGGTGCCGTGCTATTGGTCCCCGCCCCCGCCCACGCCGACGCACCGCTTCGGGAGCACGCCGAGGCCCGAGGCTTCGAGATCGGGGCCGCCCTCGGCGCCGACCACCTCAACAACGACCCCGATTTCGCGCGGCTCGCAGGCACCGAG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8318-8835 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000122.1 Nocardiopsis chromatogenes YIM 90109 contig_122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8318 29 100.0 33 ............................. CGTGGCCTGCTAAACATTCTACTCTTTGGGGTA 8380 29 100.0 32 ............................. CATTGGCCGCTGTTGCAGAATCTATTACTGAT 8441 29 100.0 32 ............................. GGTATCCACGTCCGCAACCCGGTACTTGAGCT 8502 29 96.6 32 ............................G GCGTGCCACCGGTAGAGGGTGCGGGTGGGGCG 8563 29 100.0 32 ............................. AGGAACCCCTTCCCGGGGATCGGCAGGAACCG 8624 29 100.0 32 ............................. CACCAGCCCGAGGTCAAGACCGGCGGCACGTC 8685 29 100.0 32 ............................. TCTGTGACCAGCGAAAACGCGCGGGTGTGCCT 8746 29 100.0 32 ............................. GGCCACCCCGAGCACCTTGGTGACGCCCCACC 8807 29 96.6 0 .........................A... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.2 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCCCTCGGGTGGGTCGGTCAGTGTCGGCTTCAACGCCTCCCACAGTGGGAGCAACCCCGAGCCGACGGCTTTCACGCTCAACGGCCGGTCCTGCACCGTCCTTTGACCGCCGCGGTCGCGGCCGCATCCGCGGTTCGAGCGTCGCCCCGGCCTCCCACGAAGACGGGTGAGGGAGTGCCGGGCGACGGTCGTCAAGGTCACCGGCTCCGCACACGCTCACGGAAGACGTAGACGAGGACGATCCCGACGACGCCGAGGGCGAGTATCGAGGTGAGCGCCCGCCCGGTGGTCGGCGGCCTGAGAAGGCCGCGGTCACGTTCCCCAGCGTGGTGTGTGCGAAGCGTGAAATTATGCGATAAAGAGTGGCCGGTGGGGCCGGGGAGAACGATCATCAGCGACTCTGCATGGCGGTCATTTTGCCCGGAAGGGACCAGGGGGAGGGGGAGCGGAAGTGGTTCAAAACAAGAGGTTGCTTGGTGTATCGTGCCAGGTCACGGAGA # Right flank : CCCCGGGAGAGATGTCCGAGGCGGTCTGCTCTCCGCTTCTGCGGGGGAATCCGCCCCCCGGGGCCCACCGATTTGCGCTCGGTCCGGCTCCTATAGTCGAGGCTCGACGCTCTTGGAGAGGCGGCCTTGATGGAGTCTGAGATCTCGGCGTTCTCGACCGACCAGCGCTATCGCTGGTTCGCTCACCATGAGGCCTGCGCCACGTCTCCCACTTACTCCGTCCTCGCCGATGGCATCGCTGTCGACCCGGACCTCCTCGCTCTCATCGAGCGGTTGCCCCTTCCCAAGCGGCAGCCCAACCTCCTGCTCGCCGCGGTGCGTCTCCACGGCGGGCCGATCGGCGACTACCCCGCCTTCCGCTCCTGGCTCCTCGACCACTGGGACCGGGTCGAAGCCACGATGCGCCGCCGCAGTATCCAGACCAACGAACCCGCCCGCTGCGCCGCGCTCCTCCCGATCCTCGCCGCCCTTCCTCAACCCCTCGCCCTGATCGAGGTCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14503-13985 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000157.1 Nocardiopsis chromatogenes YIM 90109 contig_157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14502 27 93.1 33 --........................... CCGCCCCTGACCGCCCCGCGCGGTCGGCGACGG 14442 29 100.0 32 ............................. CGCCTCCGGTCCTCACGGTGATGGCCTCGGCG 14381 29 100.0 32 ............................. GGGTCGTCCAGAACCCCGGCGGGCCATTGGGC 14320 29 100.0 32 ............................. ACGTACCGCCTCGTCGTCGCCTGCTGCTGGGC 14259 29 100.0 32 ............................. CACACCGCCCTGCGCCCGGCACTGCGGCGCCT 14198 29 100.0 32 ............................. CGCCGCCGCCTTCGTCGCCTTCAGAGCGACCG 14137 29 100.0 32 ............................. CGGCCCCGCACCGATCTCCTCGTCCCCTACAG 14076 29 100.0 32 ............................. CGGGCCCACCAGTCAGGACCGGGAGTGCTCAC 14015 28 82.8 0 ................-..CCC...G... | G,TC [13986,13993] ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.3 32 GTGCTCCCCGCACGCGCGGGGATGGACCC # Left flank : | # Right flank : CCCCTCCCGGGTGGCCGAAGGCCGCCCGGCGCCCCGTCCAGAACGCGTTCGTGGGAAGGCTCCCATCGTTCCCGGCCGCCCCACGCGCTCGCATCTTTCCCGGTTGACCGGCATTCCTGTCCGGAACAGGACATCGCTAGGGCTTTCGTCCTATTGACTCCTTCTCCCCGCCTCCGTAGGACGGGTGAGGACCGGAGGGAACGCGGGAGGGGAGCCGATCATGCAGCCGGTGGTGGACACCGTCACCGGGCGGGTGCGGGGCGCCCTTGACGGTGGGGTCGCGGTCTTCCGCGGAATCCCCTACGCCGCGCCCCCGGTCGGCGACCTGCGGTTCCGGCCGCCGCGGCACCCTGCCCCGTGGGACGACGTCCGGGACGCCACCGCCTCCGGGCCCACCCCGCCCGCGCCGCCGCCGTCCGCCGACCCGGCCCTGCGCCCCCTCGTGCCCGACCGGCGGGTGCCCGGCGACGGCTACCTCAACCTCGACGTGTGGACCCCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2540-3163 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000265.1 Nocardiopsis chromatogenes YIM 90109 contig_265, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================== ================== 2540 29 100.0 32 ............................. AAGATATCGGAGGTATGCCGCTTACTAATGAA 2601 29 100.0 32 ............................. CGCTTGCCCTCCTCCTGCAGGAGGCGGGTGAG 2662 29 100.0 32 ............................. AGCTCCTCCTCGGCTTCCAGCGAGAAGGGGGG 2723 29 100.0 32 ............................. CTGGGCCGCCGGGTGCCCTAGGCCGAGCATCC 2784 28 86.2 143 ...........A..C..-.......C... GCCCCCTGATCCCTCCAGCGGGCGCTCGGCCTGTGCTCCCGCGTGCACGGGGGCCGGTGCGCAACGGCACTGTGCGTTACGACAGGCGGTGCCCCCCGTGGGGTTGGTCCCCGGGACGCGTGGATGGTTCGGGTGAGCGCCAG 2955 28 89.7 32 .....T........-......T....... TGGTGAACCGCTTCTACCTAGAGAACGCCAGG 3015 29 75.9 32 ...........A.AC..A....A...TT. TCGATGTAGGTGTCGCTGCCGAAGACGTCGCT 3076 28 75.9 31 .....T........C.-....CG.C...T ACACCGACCCCCACGGCTACGTCTGGGCCGG 3135 29 82.8 0 ...........A.A..T.........T.T | ========== ====== ====== ====== ============================= =============================================================================================================================================== ================== 9 29 90.1 46 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GTGGGCGGGGCCGGTGGTATGGCATGGTCGGTCCGTGTTCCTTCCACGTGACCAGGTGGCTTTCGCGTTCGGGCCCGCGCCGGTGCTGCTGATGGGCGGGGCCCCGGTGCACGGGCTGCTTCCGGTCGTCCGCGGTGCGGCGGACGGCACGTTGCCGGTGTGCGACGGATGGAGGATCGAGGCGGGTGTGACCATGCTGGTGGTCGACGGACCGGGCGATGACGGCCTGCTGATTCAAGGAGCGGTCGACGTCGACGACGCGCGGGAGGTGGCGGCGTGGAGCGCGGCAGTGCAGGAGAGGGCGGGGGCGCTGGTTCTGTCGTTGGACGAGCTGCCGGAGCGGCCTGATTGGTCGCGGCTGCTGAACGACGGCATCGCGCGCGGCGGCTACATGAAGAAGGCCTGAGCCGATTCCGCAAAGCCCGATCCGGAGGGCAGGGGCGCGTGCCAGAGTGGTTTGAGGAGCGGGTCGGGCTTTCCAACACCGCAGGTGAAAGAGG # Right flank : TCCGCCCTCGCCCTGGTCGTGCTGGTCCAGATGGCGCGGGGTCGGCCTGACCATCTGATGGCGTCCGCTGGAGTGGTGAAGCTGTCGGCGGTCGCGGCTGCCCANCAGGGCGTCAGTCGGGGGCTGCGTCCTCTGGAGGGGCGTCACCTCTGTCCGCCCGGGTCGGCGTGGCATCCGCGCGGACAGGCGGGAATCGTCTGTCGGCGGACGGGCCGAGCAGTGCGGGTCCCTTGCCGGGCGGCCTTCGGCCGCCCGGCGTAAGCGGTCGCGGCCGTGAGAAGGTCCCCCACTCCAGCGGACGTGGCCCGAGACAGGGCGCCGATGCAGGAGCAGGGCCGCCCCACCGCCGCGACGATCGCACTGACCTGGTCGGACGTGAATGACACCACTCCAGCGGACGTGACCTGATCACTTCGTATTCGGACACCTCCGAGGAGATCTGTATCCCCGCCCCGTGCAGCGCGGGGACGTGCCCCTTCATCTGACTCCGCTGCTCCAGT # Questionable array : NO Score: 4.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-1.35, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11051-10841 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000021.1 Nocardiopsis chromatogenes YIM 90109 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11050 27 96.4 33 .................-.......... TATGTGGGTGGCGCGGCAGAGCATGGCCAGGGT 10990 28 100.0 33 ............................ GGCCACCGGCCGGGGGCGCGGCGTGGCCGTCTA 10929 28 100.0 33 ............................ GCTGTTGAGCCCGTAGATCTGGCTCGCCATGAT 10868 28 89.3 0 ............T..........A.G.. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GTGAGCCCCGCAGACGCGGGGATGGACC # Left flank : GGATCGAGGACGGGTCCCTGGAGGCGCGCGCGCAGAGCGCGGACGGGGTGTCGTTCGCACCGAAGATCAACCCGGAGGACGCGGAGGTCGACTTCACGGCGCCCGCGATGCGGGTGGACCGGCTCGTGCGGGCGTGCACCCCGGCGCCGGGGGCGTGGACGACGTTCCGGGGGACACGGCTGAAGCTGGGACCGGTGACGCCGGTGACGGACGTCGTGGCGGGCCATGACCTGGCGGCGGGCGAGCTGGCCGTGGAGAAGAAGCGCGTGCTGGTGGGGACGGCGACCCATCCCGTGAAGCTGGGGGATGTGCAGGCCCAGGGCAAGAAGATGATGAGCGCGGTTGACTGGGCGAGGGGCGTACGCCCGGAGGAGAGGGAGCGCCTGGGCGGCTAAAGGATGATGGGCGGGCGGAATGGGGATGCGGACAGAAGTGGTCCGCATGTGTTGTTCGGATGGTGAAGTTTCGATAACGCGGCCCGTTCGCCCAGGTCGTAGAGG # Right flank : AGAACCGGCCCGCGCTCACCTCCGGCAGGTCGCGCGTCTGGCCGCCTCACTCGCCCCCTGCGTGTGACACGGCCTCGCCCCTCGTCACGCGCAGTATCCTCGGGGAGGCCCATCCAGCCACTTTCGACCGCCACAATCCCCTGCGTGAGGCTGATCCCGACGTGACCGACCGTTCCCGTTCCCCGTACCGTTCCGGACGACGCGGCCCCGGGGCGGGCGGCTCAGGCGGCAAAGGCAAGGGCCAGGGCACCCCCCAAAAGGCCGCCCCCTCCGCCTCCCCCGGGACGACGGTCCGCCGCGTCGCCTACGACGTCCTCCGCGCCGTCCAAGAGCGCGACGCCTACGCCAACCTCCTCCTCCCCGCCAAGCTCCGCGACCGCGGCCTCACCGGCCGGGACGCCGCCCTCGCCACCGAGCTCACCTACGGCACCCTCCGCCGCCAGGGCACCTACGACGCCGTCCTCGACGCCTGCATCGACCGCTCGCTCTCCTCCGTCGAC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCAGACGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 35270-35727 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000266.1 Nocardiopsis chromatogenes YIM 90109 contig_266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35270 29 100.0 32 ............................. CAGCACCAGCGGCAGCGAGTCGTCGTACTCCT 35331 29 100.0 32 ............................. GATCATCATCAACCCGATCAGCAGCAGCACCA 35392 29 100.0 33 ............................. GACGAGGAGGAGCCTGTGTTCTGGCGGTGCTTG 35454 29 100.0 32 ............................. TGACCGGTGGCGGAGTCAGTGAGGCCGTGGAC 35515 29 100.0 32 ............................. CACCGCCACCGGGTGCGGCGCCCCCGGCCAGT 35576 29 100.0 32 ............................. TGGGAGGGGCCGGCGCTCTGTGACCCCGCTTC 35637 29 100.0 32 ............................. ACCGTCGACGACGGCGGTGGCGGGTTCAGATG 35698 29 82.8 0 ..............G......C....GTT | C [35722] ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.8 32 CTGCTCCCCGCGCACGCGGGGATGTTCCC # Left flank : GGGGTTCGGGCTGCGCGCGTTGCGGGCGCTCGCGGCACTGGCGGTCCTGGTGGCGGTGACCACGGTGGTGCTGGCCGGGTGGGGGCTTCCGGGCAAGGCTCCTCAGCAGCAGGTGGAGTTCACACTGCCACCCGGCGCGAGCGGCGGGGAGGTGACGGCCGAGATCGACAAGCCACCGGCGGAACTTCCTGACGCTGGGGAGCGGTGGTCGGGCGACCGATTGGAGAAGGCCGCACGGATCGCAATGGGAGCGGTGGTATTCCGCGACGGCGGCACGGAGCTGACGGACGCGGGGGCCTGGACGGTGGTGGTGGCCCGGTTCACGGGGCCGGTGCTGCTGGCACTGGCGGTATTGGCGGTGCGCAACCGGGTGAAGCGGTAGTGGAGGTCATGGGGAAGGGTCTTCTCGGCGTCCGGTGGTTACGCTGGCGGTGTGCGTGGGATGAGCGAAGTTGTCGAAAACAAGAGATTGCTTGGTGTATCGTCCCAGGTCAGAAAGA # Right flank : TGCATGGCCGGACTGGACTTGGGCTGAGGAACGTGGGGTGTGGAGTCGAAAAGAGGTCGGCCTTCACCGTCTGGAAGTGCCATCGCATGACAGGGGTCTCCCCGCAGCTTGTGGCAGGAGGTCCCCGGCGTCATGGAACGCCTCGTTCCGGGTATCGGACCGGTGCTCAGTCCCCCAGCCCGGAATGTCGGGAGAGTCCAGGAGCCGAACGTGCCCCGGGAGAACGTCATCCCGTTCATCCTTCAGGTCGTGCTTCCGTGGCTGCTGGCGGCCGTGGTCATAGCCGTCGCGGTGGCGGGCAACGTCTGGGTGGTTCGACGGGTCTATTTCCCCCAGGAGTCCCCCGAAGAATTCAACGGGCGTGCCGAAGCGGTGGTGACCGGCTACGAGAGGTCCGGTGGGGGAGGGCCCAACCCGCCGGATGTGGATGTAATGGTCGACTACTCGGCCGACGGGCGCCGTGTTACCGGTGCCGAATTGCGCGGCGACGGCGCCATGGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2734-2461 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000271.1 Nocardiopsis chromatogenes YIM 90109 contig_271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2733 29 100.0 32 ............................. GGCAACGGCTGGTCGGACATCGGGTACAACTT 2672 29 96.6 32 ............................T CCGCGCGGCACTCGCGCCTTTCCGAGCTTGGA 2611 29 100.0 32 ............................. GCCTTCAGGTCGGGCCAGGGATCGTCCACTCG 2550 29 100.0 32 ............................. CGGATCTCGGTGTCGAACACGTCGAGGAACCC 2489 29 75.9 0 ..............T.......GC.CTGG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTGCTCCCCGCACGCGCGGGGATGGACCC # Left flank : AAGAACAAGACCGGTTACAAGAAGCGCCTGGGTCACCGCCAGAAGTACACCCGGGTCCGCGTCACCGGCATCGCCAAGTAGAGGAGGGCTCCCCGATGGCACACAAGAAGGGCGCATCGTCCAGCCGTAACGGGCGTGACTCCAACGCTAAGCGGCTCGGTGTCAAGCGCTTCGGCGGCCAGGCCGTCAAGGCCGGCGAGATCCTGATCCGCCAGCGTGGGACGAAGTTCCACCCCGGCGACAATGTCGGCCGCGGTGGCGACGACACCCTGTTCGCGCTGGTCGAGGGCAAGGTCGAGTTCGGCAACCGGCGCGGCCGCAAGGCCGTCAGCATCGTCCCGGCCGGCGCCGAGTAATCAGGCGCGCCGCGAGACGAGGCAATCCGCGTAGAGGCGGGTCAGGAGGGGGGAACCCTTCCGACCCGCCTTTCGTGGATGATGGGGACGTGCGAAGTGGCATGAGAGGCCGCCTTGGCCGGGGAACACCCCAGGTCAACGAGA # Right flank : AGGACCGGCCAGCGGCCACCGCCCGTCCTCCCGCCCCTCCTCCACGGTGTGATCGGTCTCTCCTGCCCCAATGGCTTCGCCGTCGTTTGGTCCGACCGTCTAGAGTGTTGAGCGGTGGATCTTTCCTCCTCGCCCGGATCGGACGGGCGGGTCGAGGGGCCACGAAGCTTCAATCCGCGCGCCGGAGTGCGCGCCGGCGCGACATGGGGAGTACCAGGCACATGCCCGATTTCGTCGACGAAGCCGCCTTGCACGTCAAGGCCGGTGACGGCGGGCACGGCTGTGCCTCCATCCACCGGGAGAAGTTCAAGCCCCTCGGCGGCCCCGACGGCGGCAACGGCGGGCGCGGCGGGGACGTCGTCCTGGAGGTCGATCCGCAGATCGCCACCCTCCTCGAATACCAGCGCCGCCCCCACCGCAGAGCGGGGAACGGCACACCCGGCAAGGGCGGCAATCGCAACGGCGCCAACGGCGACGACCTCGTGCTCCCCGTTCCGGAC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25253-24798 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000271.1 Nocardiopsis chromatogenes YIM 90109 contig_271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 25252 30 100.0 31 .............................. CCGCGCCCTTCGGGTCGCGGGGTTCGTCGGT 25191 30 100.0 31 .............................. CGGTAGTTCACCGGCAGCAGGCCCGGGGCGG 25130 30 96.7 31 .............................G ACCATGCCTTGTACCGCGACGCCTACGACGA 25069 30 96.7 31 .............................G GTCGCCGAACGGTCCGGAGCCTCCATGGCGG 25008 30 100.0 31 .............................. AACACCTGATGCCCGCCGAGGCCCGCGGCCA 24947 30 96.7 31 .............................G TCTCGCCGTGCCCGGCCTTCTCGGTGTTGGA 24886 30 100.0 29 .............................. CGCCCGCCCGGCAAGGCCGCCGAGCACCT 24827 30 70.0 0 .....................GCTCCTTGG | ========== ====== ====== ====== ============================== =============================== ================== 8 30 95.0 31 CTGCTCCCCGCACGCGCGGGGATGGACCCC # Left flank : TCGCCAAGGCGGCGACGCCCACCACGAGGATCAGGATCGCGACCCCGATGGCGGCGAGGGCATCGTAGAAGTCCGCCGGTGGCGCGCTCCCCCCGAGAGGGGAGTCAACGTAGAAGATGAGTACCAGGGCCAGCCCCGCCACGCCCAGAAGCACCGCGACGGCACTGACCGCCCCTTGGCACCACAGCAGGATGCGCGCGATGAGAACCGGATTGGGTGTCGGGGCGTCCGCCTCCTGGTCGGGCGGGCCGTTCGTCGGCGACAGCGCCCAGGCCGGCCGCCCCTGTGGCCGTGGATATCCCACGTTCGCCTCCCCGCGCATCGGGACCGGAGTTGCCCCACGGTACAGCCGGTCCCGACGGTTGTGGTGTGGTGAGGCCACCAACTTTCAAGGACGATGGACGGAGGGAGGGAGCAGGTGTTCCGGCGATCAGCAATCGAGGGAGGCTAAAGTTGTTCAAAACAAGAGATTGCTCGGCAAGTCGCCCCAGGTCAACGAG # Right flank : GCTGTTGGTCGCCGTGCCTGCGTAGGCGTGGTGACCAACAGACCTTCTCGCGGTGACCCTCCTCGCTAAACGCGCCCGGTCGTCGTCGGGGCCGCCGCCTCCGGGCCGGGCCCGAACCATGCCTCCAGTGACCTGCGCAGTCCGGGCACCGAGGTCTCTGCGGGCTCATCGACACCCGCCGCCCAGGCGATGTGGCAGTCCGGGCGGATCAAGAGCGCGTCGGCAGGACGGCCGTCCGTCGTTTCCCCGCACACCTCCACGCGGTCCTTCCACCCCTCGGCGGCCTCCCGCAGTTCCGGGCGGTCGGACGGGACCAGCAACAGCGGCCGCCCCTCCCGCATGAGTTCGGCGACGCTGGTCGTCCCCACCTCCGTCTCCACGGCCAGGTCCTCCACGAACGTCCCGGTCAGCGGGTGGGCTCCCGGTGCCGGGTCCGGATGGCGGACATCGGCCCCCGCCAGTAGGGCCGCCATCCGGCGCTTCGCCGACTCATCGGCCAC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16646-16434 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000058.1 Nocardiopsis chromatogenes YIM 90109 contig_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16645 29 100.0 32 ............................. GCTGAACCATTTGCGGGGAACGTATTCGATTC 16584 29 100.0 32 ............................. TTAGTTGTCTTGGAAACGCACAAGGTTTCTAC 16523 29 100.0 32 ............................. GGTGCGGATGGTTCGTCGACAACACCCCCGAA 16462 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTGCTCCCCGCGTGCGCGGGGCTGTTCCC # Left flank : GAGGTCGAGGACGCTGCGGATCAGGTCAACCTGCAGGGCGACGGCGGAGCGGAGTTCGAGTCGGGGATCAACCACGGGGTGATCTGGTGACGGTGATCGTACTGACCACCTGCCCGGCGGGGCTGCGGGGGTTCTTGACGCGGTGGCTGATGGAGATCTCGGCCGGGGTGTTCATCGGCAACCCCTCGGCGCGGATCCGAGAGATCCTGTGGGACGAGGTGCGCGCGTACGCGGGGGCCGGGCGGGCGCTGCTGGCCTACAGCACCGACAACGAGCAGGGGTACACCTTCGAGACCTTCGACCACAAGTGGCGACCGGTGGACCACGAGGGTTTGACCCTGCTCATGCGCCCCCACCGGCAGGACCGGGAAGAGGCCTCCCAGCCAAAGCCAGCTTCCAAGGGTTGGAGCAAGGCATCCAAGCGCCGCCGGTTCGGAGGGCGGTGAGTCGAAGTGGCACGACACGCCGGTGTGCGCTTGTGAAACCGCAGGTCGGGGAGT # Right flank : ACGGCGCGGCGCTCGTCGGGGGGCTTGCTGCGCTGTGGTTCTCGTCCGCTTTGGCCAGCGGATCGGGTCTTTCGAGGTGGTGCCCCCGTGGTGGCCTGGGGCGGGCGATGAAGGGTCTGGTCGCTGAGGGCGGGTAGCGGCCCGGTCGGGGGCATTGGTGGGCGTTCAAGGGCGGCCCTGGGGGGTGTCCCCAGGCGCGTGGTGGGGTGGCCGTGGGCGGGGCTCGGCTTGTTCGCTGGCCTGGCGGCGAGCTTGGTCCAAGCTGAAGAGCGAAGGGGGAGCCGAAGGTGGGGTGCCCGCTGGCCCTGACGGGCACCACGGAACCCGCTGAACTGCATGTTTGTGGGTGGGCCCCCAGGGGATCGAACCCTGAACCCGCGGATTAAAAGTCCGCTCCGCTGCTGGTTGAACCGCTGGTGAATGGTGGTTTTGTCCAATTTTGAGTGGGACCCGCCGCGCCCACCACTACCGAAGTCGCGAGGCCCTCGCACGCTGAACAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTGCGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCCGCGGGGCTGTTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 35919-35584 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000058.1 Nocardiopsis chromatogenes YIM 90109 contig_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35918 29 100.0 32 ............................. GCGGTCACTGCGGGCATCCGGCTCACGACGTC 35857 29 96.6 32 ............................G GTCCACCTGGGTGAAGGACAGGTTCCTCGTCG 35796 29 100.0 32 ............................. AGGTTACATCGATTGTCAGTGATGTTCTTCCG 35735 29 100.0 33 ............................. GGATTCTCCATCTGCCAGGATAAGAAAGACTTG 35673 29 100.0 32 ............................. TGTGGGTGGGGCGCCCCCGACGCCGCAGAAGA 35612 29 89.7 0 .....................A...GG.. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.7 32 CTGCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : AGGAGCGCCTCACCCGGGCGCTGGCCGCAGCGGGGGTACGCCACAGGGCAGAGGTCTACACGGGGGCCGACCACGGATTCACGATGGCCGACACCGAGGCGTACAACGCCGAGGCCGCGGACCGCCACTGGCAGGCCCTCTTGGACCTGTTCGCCCGCAACCTCTAACCCGCCCCGAAGAGCGGTCGGCCACAGAGCGAGCGCGGAGTGATCGAACGGTGCCATGTAGGTACGTGCCTCATCAGGGCCGCTCGGTGAACTGGCCGTTTCGGTAACCGTCCGGCCTGAGCGGGTGCAAAACTGCCACTGCAGGATCCTGGAACGTGAACCGGGGCGACTGTGCCCGGTGTCAGGTGGCCCGAGGCAGGCTCGAGAGGGAGCGTGATCATGGGTGAGAGGCGGTATCGGCTTGCCGGTGGCTACCCTACTGGTGAGTACGGAGAATGAGCCAAGTTGTCGAAAACAAGAGATTGCTTGGTGAATCGCCCCAGGTCACCGAGT # Right flank : TTTTCGCCGATGCGACCCCGCTACCTGCATTAACGCCGGTCGGGGGTGGTGTTTTCGTCGTGGTGGCCCGTGAGGGGCCCGGCCTTTTCCAAGGCCGCGTCTACCAGGGCGTTCGCGGCGTTGGTCTGGCCGGTGAACCAGTGGGCGTAGGTCTGCATGAGCACTTCGACCGTGTGGCCCAGGCGCCGGGCGACCTCAGGGGCGGGGACCCCTGTGTACAGCAGCCAGGAGGCGCATCCGTGCCGCAGGTCATAGGGGCGGGAGGCTACCCCTAGCGACAGCTCCGAGGGCGTGAGCGCCGCCTCACGGGCGCGGGACCAGGCCGCCCGGTACAGCTTGCCCGGGAACACGTCGTGTTCGCCGTGCGGGGAGGCGTGCCACCACAGCCGCCCGTCCGGCGCCGTGCCGTAGCGGGCCAGGTGGCCCCGCAGCAGACCGACGAGTTCCGGGCACAGCGGCACCGGGCGCACGTCGTCGGATGCGCGCTGTTTCAGCTCGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22384-22840 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000082.1 Nocardiopsis chromatogenes YIM 90109 contig_82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 22384 30 100.0 31 .............................. TGGATTCCGGGGAATCAAGATCGGTTAGGGG 22445 30 93.3 31 ............................TC CGGCGGCGGTGTCCTGCGCCATTCGGGCCAG 22506 30 100.0 31 .............................. CGCGGTTCCCGACCGCTCCGCCCTGCGGGTA 22567 30 96.7 31 .............................C CGACGCGGATCAGCGTGGTCCCCAGCAAGGA 22628 30 96.7 31 .............................T TGTCGGCGACATTGATCGGTGTGGCGGCCAT 22689 30 96.7 31 .............................A GCTCGAAGGCGTTGATGTGCCCGAGCCGGAG 22750 30 96.7 31 .............................A TCAAGTACCGGCCCAGGTACGCCTCCCAAGG 22811 30 93.3 0 ............................AC | ========== ====== ====== ====== ============================== =============================== ================== 8 30 96.7 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : AAGTACGTGGTCTCCGACTCGATGACGGCCGATGACACCGCGCCGTGGACGGACACCACGAGGATCGTCCGTCGGGCGGAGGCCCACGACACCGTCGCCCGGCTCCGGGAGCAGGACGGCAAGGACATCGTCGTCTTCGGCAGCCCGACGGTGTGGAACGACCTGCTCGCTGTCGGGCTGGTGGACGAGCTCCACATGATGGTCGGCGCGGGCGTGGTCGGCGACGGGACACCGGCGTTCGGCACGGTACCGATCCCACCGCTCCGACTGATCGAGACGATCCGCCGCGAGGGCTCGGAGAGCGTCGTCCTGCGCTACGAGGTCGTGCACGGTTGAAAGAAAGGCGCGTCGCCTTCGGGCGGCTGCCGAATGGGCACGCCACTCGAATGGAACTTGAACCGGAGTGTGGTGGCCTGGGGCGAGGCGTTGAGGAGGAGGTGGCATGTCGGAAGTTGTTCAAAACAAGAGGTTGCTTGGTGTATAGTCCCAGGTCACCGAGT # Right flank : CGGCGGTGCGCCTGGTGGGCGCGACCCTGAATGTTGGATGGACACGCTCCCGGCCGCCCTCTCGGCGGCTATGCTCAGCCCGCTGAGGACGCTCCAGGCAGAGAGGTGGGCCCCGCATGGTCACGACGGCCGGGACCGGCGATGATCTCCACTGCTGGGTCCCGGACACCTTCGCGCTCGGACCGCTCTCCGATGGGCCGCTGAGCGGGGTCGGCTTCGCTGTCAAGGACCTCTTCGCCGTTGCCGGGCACACCTCCTCCTTCGGGCATCCGCGCTGGCGGGCCACCCATGCCCCCGCGCAGACGACGGCCCCCGCCGTCACCGCGCTCCGCGAGGCAGGGGCCCACCTCGTCGGGATGGCCAAGCTCGACCAGCTCGCCTACTCCGTCGTCGGGGACGTAGGAGAGGGCCCACCCCCGCACAACCCCGCGCATCCCGACCGCCATACCGGTGGGTCGTCCTCGGGCAGCGCCTCGGCCGTCGCCGGGGGCGCCGCCGAC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24-295 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBH01000089.1 Nocardiopsis chromatogenes YIM 90109 contig_89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24 29 100.0 32 ............................. GTGGTCGTGGAGCTGCTGTCGGCTCAGGTCAC 85 29 100.0 32 ............................. TCCGCGCGCCAGATCCGCCAGCGGGGGAAGTC 146 29 100.0 32 ............................. GGCGGTGAGGAGGGGCGGCGGAAGGTGCGCCG 207 29 96.6 31 ............................T GTCTGTGGTTGTGGTCGCGGTCTCGGGGGGC 267 29 89.7 0 ..............T.......A...A.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTCGGCTCCGCGCAGGCGGAGATGGACCG # Left flank : TTGAGGTGTGCGCGGTCTGCCCGG # Right flank : GCCCACGTCCAGGGCGGCAGGGGCGCAGGGAAGGTGAGTTCCGCACCTGCGGAGACGACCCTGACGCTGCTCCCGGGCCCTACGCCCCCGACTCCTCCGAGTTGTCCAGCACCACGTCCGCGTGCTTCCTGGGCTGGTGGCGGGTGTCGAATGCCTCTTCCTGGGCTGCCCACATCGGTCGCCAGGGCGCGTACAGCTCTGCGTCCCATCGTGCGTTCAAGCGCCTGTGACGCACCTCTTCAGGCGCCTCGACCCACACCAGCAGGGACAGGAACGGGCGCAGCTCCTCTGCGCCACATCCGCAGCCCTCGATGACCAGTGTGTCGGCCACCTCGGCGCCGTCCCAACCCCCTGCGTCGTCGGGGGCCCAGTCCCCGGTCTCCCAGTCCCATCGGCGCCAACGCGGGTCGCGGCCCTCCGCCAACGGCTCCAGCACCCATTCGCGCACCAGGGGAGCGGCCGCCTCCAGCCCCTCCCACCCGGGATACAGGTCGTCCATG # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCTCCGCGCAGGCGGAGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //