Array 1 705-473 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTR01000040.1 Phocaeicola plebeius strain AF27-1 AF27-1.Scaf40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 704 35 100.0 31 ................................... CAACCGAAATCGCATTAAAATTGTTTCTAAA 638 35 100.0 31 ................................... TTAGACAGCAGTGAGCGCGATTTTCTGGCGG 572 35 91.4 30 ....A......C............T.......... CTGAAAGGAACATTGATTGAACTGCTCAGA 507 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 4 35 97.8 31 GTTGGTTTTATTATTGTTTTGAATGGTATATCCAA # Left flank : ACACAAAACCATGTTTACAGCCGTGAGGTTATAAAGCAGGCTTTAAAACAGAATGCCGGAACTATCCACATGGAGTCATTGAAAGATTTCGGAAAAGGTAAGGACGGTTATGTAAAAGACGAGTATAAGTATCTGCTTCGTTATTGGTCGTATTACGAACTGCAAAGTATGATAGAATATAAAGCGAAATTGGAAGGTATTGAAGTGAAATATATTGACCCTGCATATACCAGCCAGACATGCAGCTATTGCGGAGAACGTGGAGAACGTAAGAAGCAAGAAGAATTTATTTGTACGAATCCCCAGTGTAAACGACGAGGAGAGAAAATAAATGCAGACTTTAATGCTGCAAGAAATATTGCGATGAGTAAAAAAATCGTAGAAAGATAATTAGAGAAGAAATTTTCTAATTGGGGCTGCTGGAAGTCCTTAACCTGAGATAGGAAACTATACTCAGGAAGTACGTCAAAACATTGAAATTGACAAGCTTAGAACAAACA # Right flank : ACAATTTGAACAAAGATAGTGAAATAATTTAGGTTGGTTTTATTTTTTTGAATGGTATATCCAACTATAAAGTTGTCTGCGATGATGTGCGCATGGGGGTTGATTTAGTTAATAACACTTTGATACAATCCACTAATTTATAAGCCTGTTCACTTTTCAAGTCAATTAATAAGGGACTGCGTGACTGAAAAGAGAACAGGCCTATTATTACTTTACTTAACATAGGGTGTGCTTAAATTACCGATATATGTTTTCATTATATTATATTTCTTTTTCAATACAAGGAGTTGATATTTTTTCTGTATTGTAAAATCATGTTGATTCTTTTTTAGGGAAAAAAATTACCTTTGCAAAAAAACAAAAAAATGGATAGACTATTGATTTTTACCTTTTTTGCATGTGTTGTTTGTTTAGCGGTTCTAATTTGCATATTCCGGCGGATACCCGTTCAGCATTTCCGGTGATATCCGTTC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGTTTTATTATTGTTTTGAATGGTATATCCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 7298-8418 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTR01000008.1 Phocaeicola plebeius strain AF27-1 AF27-1.Scaf8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 7298 47 100.0 30 ............................................... ATTTAATGCAATGAAAACAGTACCATATAT 7375 47 100.0 30 ............................................... CAAATGGTCAGCCTTATCAGCATCGACCGC 7452 47 100.0 30 ............................................... TCGAACTGACAAGAGCACAGGCAGCCAAGA 7529 47 100.0 30 ............................................... TCTTACCGCATCACTATCATTGCAAAACAA 7606 47 100.0 29 ............................................... TCTCATATAGTACATAAATCAGTCAATTA 7682 47 100.0 29 ............................................... ACAAGCATAAATATAATTCAACAAACTAA 7758 47 100.0 30 ............................................... ATTACAGAGTAATGTACCATCTAAATTCTC 7835 47 100.0 30 ............................................... TTTTTTTTCTTACATCCCTTTAGTTGTTGT 7912 47 100.0 30 ............................................... AAACAAATAAAATACATTCTACAAATATTT 7989 47 100.0 30 ............................................... ATATGGTACTGAACAGAACCTACGACGTAT 8066 47 100.0 29 ............................................... TTACACAACTACTATACATCTCTTTTACT 8142 47 100.0 30 ............................................... ATCTTTCAAATTATTTAACTACAATATATT 8219 47 100.0 30 ............................................... GCCTGGCAGGACGTGGATTCAATGGGCAAA 8296 47 100.0 29 ............................................... AAAATGGAATCCTATATGTAGCGTAATAA 8372 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Left flank : GGCCGACCGTGAAATCCGTACAGGGCCTTACGGTCTGGTGGGTTTCTGGATTGGCGGTACGAATGAGCTGGTTCGTGAAATCCGTTTCTGGAAGACAGCCCGCACACCCCAGCAGTTGAAGCAGTTCATGTGGAAAACGGTAGACGGAAGTGACGAAAATCTGCTGCTGTATTATCCGTTGAACGGAAAGAAGCGCAACCTTGAAACAGGAGAAATCACCGAGGACGAAACCATGCTTTGGGATTTCAGTAACAATGCCAAACATCTCCCTCTTCCTTCAGGGGCTAAGTTTGACGACAATGATGGAAAAGGCTTTATGTTCCCTTTGGTTGATTAATTATAGGTTTTATTAATGAAGAAAGGCTGTCTCCAACACTCTGGTGTGGAGGCAGCTTTTTATGTGTTATTATAGGGACAAATGATATTTAAATATAGAAAAACTTTTAGTATCTTTAAACAACGGGAAACAACTATCACTCCAAGAGCTCCCGTCTTCTTGT # Right flank : CTTGTTGATTGTTTCTTGTTGTCTATCAGTAGGTTATAAGTAAATTTAGAAAAAGAAAAAGTTGTTTCTTGAAATAATAAATCCCATATTAACCATGGGATTTATTATTTTAAAAGAGTTCTAATTGTTGTCCTGGTGTTTTTACCCCACTTGCTTTCTTGCCATAAAATAGCTCAATTTCTCCAAACTGTTTGTCTGTGATACATATAATTCCAACTTGACCATATTCAGGTAGAAAGGATTTTACTCTTTTTATATGCACTGCTGCATTTTCACTGCTTGCACAATGGCGTACATAGATAGAGAATTGAAACATTGTGAATCCATCTTTTTGTAGATTTTTGCGAAAATCAGTATAAGCTTTTTTGTCTTTCTTTGTTTCTGTTGGTAGGTCAAAAAGAACTAAAATCCACATAACTCTATATTCGCTGAAACGTTCCATTAGAATTCAGGATAAATGATTTTTCGTGATTCTCCAGAAAAGCATTTATATAGTGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 38197-37707 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTR01000001.1 Phocaeicola plebeius strain AF27-1 AF27-1.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 38196 36 100.0 29 .................................... TTCCAGGCATACCGCTACGGCGATAACAA 38131 36 100.0 30 .................................... ATGCACGTAGCGAACAGAAAGCATACCCAG 38065 36 100.0 26 .................................... AATGTCGGGTGCGGGCATGGTTATTT 38003 36 100.0 29 .................................... TGTCAAGAATGTCAAAGACCGTTTTTTAT 37938 36 100.0 29 .................................... TGTCAAGAATGTCAAAGACCGTTTTTTAT 37873 36 100.0 29 .................................... TGTCAAGAATGTCAAAGACCGTTTTTTAT 37808 36 97.2 30 ...........T........................ TCGTAGCATGAAATGTCAGTTGTCAATGGT 37742 36 97.2 0 ...........T........................ | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.3 29 GTCTATATGACAAAGTAATTTCTACTATGTGTAGAT # Left flank : TTATAGATTTTTTATGCAGAGAAAATCAGAAACAGAGTTCCCTTTATTTAAATATTAATGGTAATAGTTAGTTATGACATATCGGATGACCTTATCCGCTCTCGATTTCAGAGAATGCTGACTAAAAATGGTGCAATTCGTTTGCAATATTCAGTTTATGAAGTCGTTAATACAAAAAGAGTGATTGAGAATATAAAATTAAAGATTGTTGCGTATTCCAAACATTTTAGTGCAGATGATAGTGTGGTCATTTTTGAGATAAATAAGGATACCTTGGTAAAATACGGGAATGCTATTCATCGCGATACTGATATAGTTTTCTTCTAATAATTATAGGCATTACAAACCTAAGTCTTCTATATCAATAACATAGTTTGTAATATGCTGATTTACAATGCGCCTATTGAATTCTATAGATTAAGGTGGGGAAATATTCCGATAAAAATATAGGCTTATTTATTTGATTATTAATAAAAAATATGGATATTTGCATAGTAAGC # Right flank : TAAAGCAATGTCACATTTCGTTTTGCGTGTCTATATGACTAATTAATTGTTATTGGTATACTCAGTTCGTTTATATGGTCAAGAAATTTTATATTAGAGCTCTATTGGGTAGGACACCGATGGAATGAAGTATTAAAAAGCTTATGGAAGATAAAGACAAAATATACGGAAACCAGTGTGGAAGCGACAATGCTTTCACCAGGAAAGCAAGGCTGCTTCAGTCTATGTACAGTGTGGAGATAGGCGAAGAAGAAGGAGTAGGGCCTATAAAAGCCTCCAAGCAAAATATGGGAACATGATTAGTGGGGTGAGGTGTCCGGAAAGAACTTCCTTATGAAGGAGGCTTTCGAGTACGCCAAGAAAAGAGTGGCCAAGAAAAGTAAAAATGAGACAATAGACGGGTTCAGGCTGTTCAACAATCTGCTTTCGAGCCAGCCGATGACATTTATCTGTTCTATCCCTTGATGTTGTTGTTGAAGCAGGATCCGGCAATGGTTACG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTATATGACAAAGTAATTTCTACTATGTGTAGAT # Alternate repeat : GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //