Array 1 9474-9928 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG428344.1 Xenorhabdus bovienii str. Jollieti, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9474 29 100.0 31 ............................. GTTCAAATGTATACATTTTCACTCTTATTGT 9534 29 100.0 32 ............................. GAGACTCACGCCATGTCATGACTGAAAAATTT 9595 29 100.0 32 ............................. ATGATGCCACGTTACTATTCGCCATACCTAAT 9656 29 100.0 32 ............................. TTTTCATATAGGACTCATCAGGATCAGCCAAT 9717 29 100.0 32 ............................. TCTATTGAGCGTCCAGCACTGAGTTTATTGTC 9778 29 100.0 32 ............................. GTAATGCCGGATTAAAAACGGGGATTGAAATT 9839 29 100.0 32 ............................. CCTGCAATGGGAACATACTTCGCGGGGTCGTA 9900 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGTAGGTACGGGGATAAACCG # Left flank : CCGTTGATCGAGGAAGTGCTCGCTGCGGGTGAAATATCCCCTCCACCACCGCCAGATGATGCCCAACCTCCCGCCATCCCCGAACCGCTCTCCATCGGCGATATTGGTCACAGGAGCCGATAACATGAGTATAACGATCGTCGTTACCGAAGCAGTTCCTCCGCGCCTGCGGGGGCGTCTGGCTATCTGGCTGCTTGAGATACGGGCAGGGGTTTATGTCGGTGATGTCTCGCAGAAAATCAGAGAAATGATTTGGGAACAAATCACAGAATTAACCGAAGCAGGAAATGCCGTTATGGCTTGGGGAACAAATACAGAATCAGGGTTTGATTTTCAGACGTTCGGTGAAAATAGAAGAGAACCAATAGATTTTGATGGCTTACGGCTAGTGAAATTTAAACCACTTCCTGAGGGTTAATTTTGATCGCGTTTTAGGCTTTTAAAGTGGTAGAATTTTTATGCTCAATAAAGTCATTTTAAAACAAATGGTTATATTTAGA # Right flank : AACAGCAGAACATATCTTCCCATAATAGCAAGACTCACTATGACTCAAACTCGTCATAGAGAAATTGTTTTCACTAAAGTCACTATACGAAATATTCAACTTTAGTTACTCATTTTCCAGCATTATTCGTTAACAGACTTCATATAACCTATGATAATCTACTGCGTCCTTCATTTTTCTTTGAGTTTATTATGACCTTAACTAACTTCAGCAAATTGTTAGCCGCTACACTTTGTCTTGCGACTTCATACAGCTATGCAGATGGTGAGCGCCCACTTTTTTCATTGACGATGGCAGAGTCTGGTGTATCGCAGACGAATAACGATGGGAGTTTATCTCATTCTACAAAATCAGAATCCCGCATTCTGCCGATTTGGGGTGATGAAGCGCGAGCTAAAGGCTACGATCTGCCTGAGCCATTTGGCGCAAGTTATGGTTATATGAATCTGCGTCAGGATATCATTATAGACAGCATTAAATTTCAATTTACCAATCCGCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAGGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5177-4171 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG428342.1 Xenorhabdus bovienii str. Jollieti, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5176 29 100.0 32 ............................. GATCATCCAGAGAAAAAATTTCTGTGCGTAAA 5115 29 100.0 32 ............................. GCTAAAAATAATGGCTAATGCATTTGATTTTG 5054 29 100.0 32 ............................. TCTGTACCCAGACAGCCTGTTTCGCCATTACG 4993 29 100.0 32 ............................. TCCTAACACGGCACTTTGAACGCGCCCAACGT 4932 29 96.6 32 ............................A GAGGCGAATGACCGTCTGATGATTGGGTTCAA 4871 29 100.0 32 ............................. AGAAATGTAGTGAGGGGATATCTCATCTGGAA 4810 29 100.0 32 ............................. AAACTAATGAGGAAAATATCAAACGTGGGTTT 4749 29 100.0 32 ............................. ACAGGGAAGAAGAAGTTAAAGGGCAGAATATA 4688 29 100.0 32 ............................. CCCCTGTGTTTACTTCGGTTGTTCCGGCCATT 4627 29 100.0 32 ............................. GCATTTTCAGAGGGGTTGCGGGTCGAAATCAA 4566 29 100.0 32 ............................. TTATGCGACATTTGTGCCTGAGTTCATGTTGT 4505 29 96.6 32 ............................T TTCGCTTTTTTCAGTTGGTCGGTCGCATTGGC 4444 29 100.0 32 ............................. CTCTAGATCTTCCGCCAAATGTTGAACGTCAT 4383 29 100.0 32 ............................. AGGCCCTACTGAGTTTTCACTATCGATACAAA 4322 29 100.0 32 ............................. AACTATGACAACTGGAAACTGATTTTCCCTCA 4261 29 100.0 32 ............................. CCATCCCATGTGATCTGCCATTAGATTGTCAA 4200 29 93.1 0 ..........................T.T | G [4185] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GTGTTCCCCGTAGGTACGGGGATAAACCG # Left flank : CGGCTACTGTAGCGTGTCTGACTACTGTGGGTCTGGTACTGCCAGTGATTGGTGAACTGGGTTATTCCGGTGCACAAATGGCGGCGTTGTCAGTGTGTATTGCTGGTGGTTCGTTGATACTCAGCCATGTAAACGATTCTGGCTTCTGGCTGTTCGGTAAGTTTACGGGTGCGACAGAAATACAGACACTGAAAACATGGACCATTATGGAAACTATTTTGGGTACTACGGGTGCCATTATCGGCATGATCTATTTTGCTATGCTGAGTTAAACTTTCTCTGAAACATCGCTAACGGCATTTTACTGATTGATTAAAATGCCGTTTTTTTTATATTTATTTTCGGGTTTTTCAATAAAAAACCTGATGGGTGTTTGCTGTGGGGATGGCGAGGTGATTTGAGTAAAAATCATAGAATTTCCCTCGGTTAATTTTGTGATTTAACGTGGTAGAATTTTTACGTCTAATAAAATATATTTAAAACAGACGGTTATATTTAGA # Right flank : GCTGAAACTACGGTTCTGCATTTATTCCACTGAATGTCTTTGCTTTCCACACTTTGTCATTCACTGCTCAATCAAACCAATAATCTGGCTATAAAGCGCTTCGGCACTGCGTTCATACCCTGCGGCGGAGAGATGAACATAGTCGGGACGAGCAAGGTTCTGCTGCTGCCAGCTTCTGACTGAACATGACCCACCCATAAACTCCTGCCAATTCCAGAACAGGGTGTGCTGCTGTTTGGCGACGGCCTGCTGAGCCTGAATTATGCCATTGAGCAGAGCGGGTTGCTGTTCAGCACAGCTTGCAGCAGTTTTGTTTTTCAGCGAATCACTCGGCCCAACCAGCAAGATAACCACTTCTGGCATGACCTTGCGAATTTCCTGCACTTTTGATGTCAGTTCCTTCTGATAGGCAACAAGATCCAGTGAATCGTTGAAGGCTTCATTAGTGCCATAAGCAAGGATTACCATATCCGGTTTCAGTTGAACCAGTGTATTGATCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAGGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13278-13611 **** Predicted by CRISPRDetect 2.4 *** >NZ_HG428342.1 Xenorhabdus bovienii str. Jollieti, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13278 29 100.0 32 ............................. ACACAAATGAGTATCGATTTAGTGCATGCACA 13339 29 100.0 32 ............................. TCCCAGTTTTCTCTGATCCAATAGTCCTTGGT 13400 29 100.0 32 ............................. GCAGAACTGTCAAAGAAATGTAGCGCCATTCC 13461 29 100.0 32 ............................. CCTTGAGCGACAAACATCCCATCTTTTATGGT 13522 29 100.0 32 ............................. TGCAGTTCCAGACTCTGGATGGCAGATTTCAT 13583 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 34 GTGTTCCCCGTAGGTACGGGGATAAACCG # Left flank : TTACCCAGTGGCTCAGCAAGAGCGGTAAATCGAGGCAGTTCATACTTGATTTGCGGCCCCAGTAAAATCACATCGGCTTCATTGATATACATTTCCAACTCCAATGCGGGCACTGCTTTAATGGCTACCTCCAGTTCCCTTCTTTCCGCTTCCGCCTGCATACGCTGCACCAACATGCTGGTAGACATCCCCGCCGCACAACACAATAGAATGGTTTTCATGATTTTGTTCTCTTTGCTGTTGTCTATTATGATTTCGTCTAATTCGAAGATGAGAGCGCTCTCATTTTGGTTAAGGCTAACAGGTTATTTTTCCGTTGCTGCGATAAGGTTCGCATAATAGATAAGCAATAGTTTAGAAAATGGGCAAAATGCGAGCAATGTTACAAATGATCGGTATGGTAAAAAATACGGCAGGAATTTGGCTGATTTAGGTGGTTAAAAAATGGTAGAATTTTGAAGGTCAAAAAACATTTTATAAAACAGATAGATGAAATTAGA # Right flank : GGATTCATATACAGGTCTTAAGCACCAATGGCTTATTTTAGATACAAAAAAACTTCATTTATGATTTGATAATCGTCGCCAAACAAATCACCAAAATCACGGATGAAGCTGATGATTGCTGTAAAGCACCAATTAATACAACTCATTGATGAGGATTCTTTGCAAAAGATTAAGTTAAAAAAACAATTAATAACCTATTATAAATATCTTATGGAATTTAAACATCACCTCGAACTTCTATATTTTTTGACTTTTAATTCTTTCTTTTTTATTAATATATTCTTAATTAAATTTATTACAATTAATAAATTTAACAACATATTAATAATCTATTTTAACTAAAAATAATTTCTTGTTAATATTATATAATACACAAAGTGTTTGATGTATAAGTATAAAATACACTTTAACACCTCAAATACAAATGGCACAAAAAAGAAACTTATATAAAAAATAATAAAAAATTGCATGTATAATGCAAGGCATTTAATTTATTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAGGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //