Array 1 1-432 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JGYD01000004.1 Dehalococcoides mccartyi strain MB contig-3000000, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
         1	    32	 100.0	    35	................................	TCTCGCTACAAAATCAATCAGTTTTTGAATGACAA 	
        68	    32	 100.0	    36	................................	AGGTTCTAAAGGTGCTCTTAAAGGGGCAATTATTAT	
       136	    32	 100.0	    35	................................	TCTCGCTACAAAATCAATCAGTTTTTGAATGACAA 	
       203	    32	 100.0	    34	................................	GGAGTACCAAAAGCAAGTGTGGGTGCTATGCCTG  	
       269	    32	 100.0	    34	................................	ACCTAAGGAACATAAACAACTCATGCGAAAGCTT  	
       335	    32	 100.0	    34	................................	AACACTATGGTTAAATCTGGTCAGATATTACCGC  	
       401	    32	 100.0	     0	................................	|                                   	
==========	======	======	======	================================	====================================	==================
         7	    32	 100.0	    36	ATTGCTCCCCACGCGGGAGCATGAATTGAAAC	                                    	       

# Left flank :   |
# Right flank :  CATCATATACAGCACTATAGGGCTAATTGAAACTTACCTGTAGTTAGTTTGTCAGATGTGCCTATTGCGGAATGCCTATGTGGGCACAAACTTACAAAAGCGGAAACAGCTACTACCGGGAGCATCAGGCCTCAAGGAGCATACAGGAATGCCCCGGACATGGCGGTACTATAGCCTGTCATGTGATAGATAACCAGATCAGGGAACTGGTTTCCGCTATAGAGCTTGGTCCGGGCTGGCTTGAAGAAGTACTTTCTATCATAAGCCTTAAGGATGAAGTGGAAAGAGTTAAAAAAGAAAAAGAGCAGGTAATCGGAAAGCTCCACCGTATGGCCAAAACCTATATAGACGGTCTGATACCTGAGGAAGAATACTTAAGGCAGAAAAGACTTCTGGAACTCAGTCTGGAATCACTGGTAGTCCCTGACTATGACGCATCCGCGCAGGCTGGGAAACTTATCCAGAATCTGCCTGTACTCTGGGGTAAGGCAAACCTTGCT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTGCTCCCCACGCGGGAGCATGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [9,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-4.70,-6.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.37   Confidence: HIGH] 

# Array family : NA
//


Array 1 231-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JGYD01000002.1 Dehalococcoides mccartyi strain MB contig-1000000, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
       230	    32	 100.0	    32	................................	GTGCCAGCGTGTCATGGTTAAAAGGATTCTGG    	
       166	    32	 100.0	    36	................................	TGTAACTCCATATTTACATATCACTATAAGATTAGC	
        98	    32	 100.0	    34	................................	TTTATATGCTGACATGTGAAACCTCTTGGTAGAA  	
        32	    32	 100.0	     0	................................	|                                   	
==========	======	======	======	================================	====================================	==================
         4	    32	 100.0	    34	GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC	                                    	       

# Left flank :   TGCCTACCCGGCATTCATATATCGCTAAAGCAAGACTGTACCTTAACAACCAAATAAACGATAAAAACAAAACGGAGCAAAACATGCTGGTAATAATAACTTATGATGTAAGCACAGAGACACCCCAAGGGCAAAAACGCCTCCGTCAGGTAGCCAAAATATGCAAAAACTTTGGACAGAGAGTCCAAAAATCTGTTTTTGAATGTCTTCTAGACCCCTTACAGCTGGCCAATATACGCAGCAAACTTCAAGTAACCATAAACCAAGAAGAAGACAGCCTGCGCATATACCATCTAGGCAGCAACTGGAGACCCCGTATAGAACACATGGGTATAAACCGTCCATATGACCCGGAAGGCCCACTAATCCGCTAAGCCCAAGTGCACAGCTATTCAAACCTTGAGTTAGCGAGCTTTAAATACCTATATAAAAAACTCTTCAAAGCTATGCTAGAAAGATCATATTAAACAACCCTAGCATTATTTAGCTTTGGGTATACT
# Right flank :  C

# Questionable array : NO	 Score: 8.86
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [6,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.90,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//