Array 1 33624-34810 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOZE01000051.1 Salmonella enterica subsp. enterica serovar Hadar str. ATCC 51956 SEEH1956_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33624 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 33685 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 33746 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 33807 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 33868 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 33929 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 33990 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 34051 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 34112 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 34173 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 34234 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 34295 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 34356 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 34417 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 34478 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 34539 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 34600 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 34661 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 34722 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 34783 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51492-53231 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOZE01000051.1 Salmonella enterica subsp. enterica serovar Hadar str. ATCC 51956 SEEH1956_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51492 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 51553 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 51614 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 51675 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 51736 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 51797 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 51858 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 51919 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 51980 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 52041 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 52102 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 52163 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 52224 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 52285 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 52346 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 52407 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 52468 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 52529 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 52591 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 52653 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 52714 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 52775 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 52836 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 52897 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 52958 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 53019 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 53080 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 53141 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 53202 29 100.0 0 ............................. | A [53229] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //