Array 1 537037-533709 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWN01000002.1 Pasteurella multocida strain HND11 Contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 537036 28 100.0 32 ............................ AGTCTTTCGCTTTGATTCATGATAGCTTTGGG 536976 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 536916 28 100.0 32 ............................ CATACTCTTACGACAAAGAGGTCTTGTTGAGT 536856 28 100.0 32 ............................ CCCAACTTCATCCCGTAGCATAGCTGAAAAGT 536796 28 100.0 32 ............................ ATAATGTCTCCTGTTCGTTCCATTATTTCAAT 536736 28 100.0 32 ............................ TCATTGAGAAGTCGCTTAGCGTTCGCTACGTC 536676 28 100.0 32 ............................ AGCATATAAATAATGTGCTGAGGTTCGACCAA 536616 28 100.0 32 ............................ CTGAACGTTCCACAGGTATGCTGTCTCAACTT 536556 28 100.0 32 ............................ ATTCATAGTATTACCACAAGAGTTCGATTAAC 536496 28 100.0 32 ............................ AGCGTGTAGAGAAGAAACATAATCACAACAAG 536436 28 100.0 32 ............................ CATAGTCGCTTCCTTTTAAGCAAATGCAAATT 536376 28 100.0 32 ............................ ACATCTCAATCGTAGTCTCAGCATCTGAAGAA 536316 28 100.0 32 ............................ ACCAACGGTAGTTTACTGGGTCTTGGGCCGAC 536256 28 100.0 32 ............................ TTACAAAGCAGTTAAGTATTCAGAATCTTCAA 536196 28 100.0 32 ............................ GGAAAGCGGACAATCTAAGCAGTTTGTTTCAA 536136 28 100.0 32 ............................ AAGCATACGATTGAAGGTAATAGGAGGTCTCT 536076 28 100.0 32 ............................ TATTGACAACTGTAATATTCTCTCTCTATATT 536016 28 100.0 32 ............................ AAAAGGTTTCCTTGATAATACAATGCCTCATA 535956 28 100.0 32 ............................ GAGATGGTGAAAGCTATGTCTGATAAACGTTA 535896 28 100.0 32 ............................ TGTTATGACTTTATCATACGGTGCCACAAAGT 535836 28 100.0 32 ............................ AAATGGGGATAGACCAGAACACGTTAAGAACA 535776 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 535716 28 100.0 32 ............................ TTGAAAAGACCTATCTCCTGTTCACGCACTGC 535656 28 100.0 32 ............................ TAGTGGACGCTGATAACGGTCTTCCACTTCTT 535596 28 100.0 32 ............................ ATTCGCAGGCGTCTTGAGATGTTAGTGTCCCT 535536 28 100.0 32 ............................ ATTGATTCACGGATACATCTAAACATTTTATC 535476 28 100.0 32 ............................ TTTAGTTACTCATCTAGCCATTCATTACTCAT 535416 28 100.0 32 ............................ TCCGATAAGTCAACAATCATGAACGATGACTA 535356 28 100.0 32 ............................ TAGTCCGCCATATCCTCACCACTATAATGTGG 535296 28 100.0 32 ............................ TGTAAGAATAAGTTAACCATAATGTACTCCTG 535236 28 100.0 32 ............................ AAGTACAAATTAAGTACATGGAGAAGACTAAT 535176 28 100.0 32 ............................ ATAAAGAAGACTACGGGATTCAACTAAAGGTA 535116 28 100.0 32 ............................ ACATTAGCATACTCAAAGCAGAACGCTAAGAA 535056 28 100.0 32 ............................ TATCGCATGGTTGCGTGAGGGTAAACAAGAGA 534996 28 100.0 32 ............................ AATGGACGAAGTTTAATAGACGCAGGGAAAGC 534936 28 100.0 32 ............................ TCAATCAGCCCAACATGTTGACCACTATTCAG 534876 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 534816 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 534756 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 534696 28 100.0 32 ............................ AATTTATGCAACAACGATCAGCATTGATCCAT 534636 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 534576 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 534516 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 534456 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 534396 28 100.0 32 ............................ AACCGAACAAGATTAATAACGCGACAGTCGGG 534336 28 100.0 32 ............................ ACTCAGCAAGTCTTCCAACGACTAAATATTCT 534276 28 100.0 32 ............................ AAGCGTAGTGAATGGTCTGTAGATTATTTTTT 534216 28 100.0 32 ............................ TTCTCACTTGTCTGCGTACATTAAAGTTAATC 534156 28 100.0 32 ............................ GCAAGTGGCACTTGTGCAATTGAGCCGTATTT 534096 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 534036 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 533976 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 533916 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 533856 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 533796 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 533736 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================ ================== 56 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : GACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15572-15959 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWN01000004.1 Pasteurella multocida strain HND11 Contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15572 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 15632 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 15692 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 15752 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 15812 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 15872 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 15932 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGAGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //