Array 1 340707-341832 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRM01000004.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_60 contig0003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 340707 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 340768 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 340829 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 340890 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 340951 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 341012 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 341073 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 341134 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 341195 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 341256 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 341317 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 341378 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 341439 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 341500 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 341561 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 341622 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 341683 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 341744 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 341805 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 358456-360987 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRM01000004.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_60 contig0003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 358456 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 358517 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 358578 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 358639 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 358700 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 358761 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 358822 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 358883 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 358944 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 359005 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 359066 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 359127 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 359188 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 359249 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 359310 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 359371 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 359432 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 359493 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 359554 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 359615 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 359676 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 359737 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 359798 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 359859 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 359920 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 359981 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 360042 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 360103 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 360164 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 360225 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 360286 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 360347 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 360408 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 360469 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 360530 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 360591 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 360652 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 360713 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 360774 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 360835 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 360897 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 360958 29 96.6 0 ............T................ | A [360985] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //